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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of vacuole organization
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Accession:GO:0044090 term browser browse the term
Definition:Any process that activates or increases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of a vacuole.
Synonyms:exact_synonym: positive regulation of vacuole organisation
 related_synonym: positive regulation of vacuole biogenesis


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positive regulation of vacuole organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa2 annexin A2 ISO (PMID:25139904) RGD PMID:25139904 NCBI chr 8:75,687,134...75,723,589
Ensembl chr 8:75,687,100...75,723,594
JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 ISO (PMID:21072319) RGD PMID:21072319 NCBI chr 2:211,243,398...211,323,283
Ensembl chr 2:211,246,068...211,322,719
JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 IMP RGD PMID:25561470 RGD:11561937 NCBI chr10:89,209,944...89,225,297
Ensembl chr10:89,209,940...89,225,297
JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 ISO
IEA
(PMID:21072319)
GO_REF:0000107
RGD
Ensembl
PMID:21072319 GO_REF:0000107 NCBI chr 2:211,243,398...211,323,283
Ensembl chr 2:211,246,068...211,322,719
JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 ISO (PMID:25484098) RGD PMID:25484098 NCBI chr 3:11,970,401...12,009,463
Ensembl chr 3:11,972,813...12,007,570
JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha ISO (PMID:25578879) RGD PMID:25578879 NCBI chr17:85,533,056...85,748,843 JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta ISO (PMID:25578879) RGD PMID:25578879 NCBI chr10:85,655,223...85,684,138
Ensembl chr10:85,658,324...85,684,138
JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma ISO
IEA
(PMID:25578879)
GO_REF:0000107
RGD
Ensembl
PMID:25578879 GO_REF:0000107 NCBI chr 7:70,483,948...70,498,995
Ensembl chr 7:70,483,942...70,498,995
JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 ISO
ISS
IEA
(PMID:25495476)
GO_REF:0000024
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:25495476 GO_REF:0000024, GO_REF:0000107 NCBI chr13:44,578,208...44,649,876
Ensembl chr13:44,615,553...44,648,620
JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 ISO
ISS
IEA
(PMID:25495476)
GO_REF:0000024
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:25495476 GO_REF:0000024, GO_REF:0000107 NCBI chr13:103,157,806...103,229,010
Ensembl chr13:103,157,806...103,228,423
JBrowse link
G Ralb RAS like proto-oncogene B IEA
ISO
GO_REF:0000107
(PMID:24056301)
Ensembl
RGD
PMID:24056301 GO_REF:0000107 NCBI chr13:35,494,716...35,531,503
Ensembl chr13:35,494,721...35,511,020
JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 IEA
ISO
GO_REF:0000107
(MGI:MGI:5634888|PMID:21068542)
(PMID:21068542)
Ensembl
RGD
PMID:21068542 GO_REF:0000107, MGI:MGI:5634888 NCBI chr 2:250,709,812...250,744,216
Ensembl chr 2:250,709,439...250,744,196
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 IMP RGD PMID:23448468 RGD:13208863 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702
JBrowse link
positive regulation of lysosome organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grn granulin precursor ISS
ISO
IEA
GO_REF:0000024
(MGI:MGI:5905514|PMID:28073925)
(PMID:28073925)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:28073925 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5905514 NCBI chr10:90,377,103...90,383,207
Ensembl chr10:90,376,933...90,383,205
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    cellular process 18788
      positive regulation of cellular process 6147
        positive regulation of cellular component organization 1319
          positive regulation of organelle organization 670
            positive regulation of vacuole organization 13
              positive regulation by symbiont of host vacuole organization 0
              positive regulation of autophagosome assembly 11
              positive regulation of lysosome organization 1
              positive regulation of vacuole fusion, non-autophagic 0
Path 2
Term Annotations click to browse term
  biological_process 20014
    cellular process 18788
      cellular component organization or biogenesis 6766
        cellular component organization 6510
          organelle organization 4073
            vacuole organization 197
              regulation of vacuole organization 56
                positive regulation of vacuole organization 13
                  positive regulation by symbiont of host vacuole organization 0
                  positive regulation of autophagosome assembly 11
                  positive regulation of lysosome organization 1
                  positive regulation of vacuole fusion, non-autophagic 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.