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ONTOLOGY REPORT - ANNOTATIONS


Term:membrane biogenesis
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Accession:GO:0044091 term browser browse the term
Definition:A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a membrane.


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membrane biogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clip3 CAP-GLY domain containing linker protein 3 ISO
ISS
(PMID:11854307)
GO_REF:0000024
RGD
UniProt
PMID:11854307 GO_REF:0000024 NCBI chr 1:88,750,453...88,766,453
Ensembl chr 1:90,962,707...90,978,907
JBrowse link
G Exoc4 exocyst complex component 4 IMP RGD PMID:16478790 RGD:2314419 NCBI chr 4:60,549,128...61,358,305
Ensembl chr 4:60,549,197...61,355,994
JBrowse link
G LOC108348122 CAP-Gly domain-containing linker protein 3 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:90,962,921...90,978,946
Ensembl chr 1:90,962,707...90,978,907
JBrowse link
G Serinc1 serine incorporator 1 IDA PMID:16120614 BHF-UCL PMID:16120614 RGD:8553290 NCBI chr20:38,966,016...38,985,056
Ensembl chr20:38,967,238...38,985,036
JBrowse link
caveola assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cav1 caveolin 1 IEA
ISO
IBA
GO_REF:0000107
MGI:2180372|UniProtKB:Q03135 (MGI:2176684|PMID:11884617), (MGI:3629009|PMID:12759260), (MGI:5607358|PMID:25006397)
PMID:21873635
(PMID:12743374)
UniProtKB:P49817 (PMID:12633858), (PMID:25006397)
Ensembl
RGD
PMID:11884617, PMID:12633858, PMID:12743374, PMID:12759260, PMID:25006397, PMID:21873635 GO_REF:0000107, MGI:2176684, MGI:3629009, MGI:5607358, RGD:13792537 NCBI chr 4:44,597,123...44,630,206
Ensembl chr 4:44,597,123...44,630,200
JBrowse link
G Cav2 caveolin 2 IEA
IBA
ISO
ISS
GO_REF:0000107
PMID:21873635
(PMID:12633858), (PMID:12743374)
Ensembl
RGD
PMID:12633858, PMID:12743374, PMID:21873635, PMID:12633858 GO_REF:0000107, RGD:13792537, RGD:8553562 NCBI chr 4:44,573,264...44,580,640
Ensembl chr 4:44,573,264...44,580,638
JBrowse link
G Cav3 caveolin 3 ISO
IBA
(PMID:18936328)
MGI:2684578 (MGI:3772152|PMID:18054955)
PMID:21873635
RGD PMID:18054955, PMID:18936328, PMID:21873635 MGI:3772152, RGD:13792537 NCBI chr 4:144,382,945...144,398,919
Ensembl chr 4:144,382,945...144,398,917
JBrowse link
G Emp2 epithelial membrane protein 2 NOT ISS
ISO
GO_REF:0000024
(MGI:3047005|PMID:14978215)
UniProt
RGD
PMID:14978215 GO_REF:0000024, MGI:3047005 NCBI chr10:5,433,248...5,467,840
Ensembl chr10:5,433,248...5,467,839
JBrowse link
G Pacsin2 protein kinase C and casein kinase substrate in neurons 2 IEA
ISS
ISO
GO_REF:0000002
GO_REF:0000024
(PMID:21610094)
InterPro
UniProt
RGD
PMID:21610094 GO_REF:0000002, GO_REF:0000024 NCBI chr 7:124,224,210...124,317,407
Ensembl chr 7:124,223,633...124,317,379
JBrowse link
clathrin-coated pit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gak cyclin G associated kinase IEA
ISO
GO_REF:0000107
(PMID:16155256)
Ensembl
RGD
PMID:16155256 GO_REF:0000107 NCBI chr14:2,100,104...2,174,332
Ensembl chr14:2,100,106...2,174,318
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IEA
ISO
GO_REF:0000107
(PMID:16262731)
Ensembl
RGD
PMID:16262731 GO_REF:0000107 NCBI chr 1:154,377,229...154,458,966
Ensembl chr 1:154,377,247...154,458,425
JBrowse link
cornified envelope assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmkn dermokine IBA
ISO
PMID:21873635
(MGI:5603671|PMID:24794495)
RGD PMID:24794495, PMID:21873635 MGI:5603671, RGD:13792537 NCBI chr 1:89,215,266...89,229,696
Ensembl chr 1:89,215,266...89,229,696
JBrowse link
G LOC100912070 dermokine-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:91,152,572...91,157,297
Ensembl chr 1:91,152,635...91,156,060
JBrowse link
G Psap prosaposin IEA
ISO
GO_REF:0000107
MGI:1888378 (MGI:5607491|PMID:24872419)
Ensembl
RGD
PMID:24872419 GO_REF:0000107, MGI:5607491 NCBI chr20:29,831,302...29,856,876
Ensembl chr20:29,831,314...29,856,875
JBrowse link
G Stx2 syntaxin 2 IEA
ISO
GO_REF:0000107
(PMID:22226963)
Ensembl
RGD
PMID:22226963 GO_REF:0000107 NCBI chr12:31,324,203...31,360,249
Ensembl chr12:31,335,372...31,360,254
JBrowse link
G Stx4 syntaxin 4 ISO
IEA
(PMID:22226963)
GO_REF:0000107
RGD
Ensembl
PMID:22226963 GO_REF:0000107 NCBI chr 1:199,287,384...199,295,606
Ensembl chr 1:199,287,710...199,294,979
JBrowse link
G Ugcg UDP-glucose ceramide glucosyltransferase ISS
ISO
GO_REF:0000024
(MGI:5510915|PMID:23748427)
UniProt
RGD
PMID:23748427 GO_REF:0000024, MGI:5510915 NCBI chr 5:76,376,722...76,419,564
Ensembl chr 5:76,386,836...76,419,560
JBrowse link
membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ank3 ankyrin 3 IGI
IEA
ISO
PMID:14757759
GO_REF:0000107
(PMID:14757759), (PMID:17620337)
Ensembl
RGD
PMID:14757759, PMID:17620337, PMID:14757759 GO_REF:0000107, RGD:8693361 NCBI chr20:19,948,767...20,480,628
Ensembl chr20:20,105,047...20,480,623
JBrowse link
G Sptbn1 spectrin, beta, non-erythrocytic 1 ISO (PMID:17620337) RGD PMID:17620337 NCBI chr14:114,517,839...114,700,199
Ensembl chr14:114,518,816...114,692,764
JBrowse link
G Tlcd1 TLC domain containing 1 ISO (PMID:30509349) RGD PMID:30509349 NCBI chr10:65,439,104...65,441,140
Ensembl chr10:65,439,102...65,444,001
JBrowse link
G Tlcd2 TLC domain containing 2 ISO (PMID:30509349) RGD PMID:30509349 NCBI chr10:62,303,124...62,306,198
Ensembl chr10:62,303,662...62,306,888
JBrowse link
membrane raft assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa2 annexin A2 ISO (PMID:23861394) RGD PMID:23861394 NCBI chr 8:75,687,134...75,723,589
Ensembl chr 8:75,687,100...75,723,594
JBrowse link
G Emp2 epithelial membrane protein 2 ISS
ISO
GO_REF:0000024
(MGI:3047005|PMID:14978215)
UniProt
RGD
PMID:14978215 GO_REF:0000024, MGI:3047005 NCBI chr10:5,433,248...5,467,840
Ensembl chr10:5,433,248...5,467,839
JBrowse link
G Flot1 flotillin 1 ISO (PMID:25204797) RGD PMID:25204797 NCBI chr20:3,427,890...3,438,418
Ensembl chr20:3,427,880...3,438,396
JBrowse link
G Flot2 flotillin 2 ISO (PMID:25204797) RGD PMID:25204797 NCBI chr10:65,304,901...65,329,332
Ensembl chr10:65,304,902...65,329,312
JBrowse link
G Rftn1 raftlin lipid raft linker 1 ISO (PMID:12805216) RGD PMID:12805216 NCBI chr 9:12,740,885...12,942,358
Ensembl chr 9:12,740,885...12,942,358
JBrowse link
G S100a10 S100 calcium binding protein A10 ISO (PMID:23861394) RGD PMID:23861394 NCBI chr 2:193,892,589...193,901,236
Ensembl chr 2:193,892,589...193,901,236
JBrowse link
negative regulation of clathrin-coated pit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Syt11 synaptotagmin 11 IMP PMID:26589353 ParkinsonsUK-UCL PMID:26589353 RGD:11079192 NCBI chr 2:188,112,301...188,138,180
Ensembl chr 2:188,112,286...188,138,177
JBrowse link
neurexin clustering involved in presynaptic membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlgn1 neuroligin 1 ISS
ISO
GO_REF:0000024
(MGI:2665153|PMID:12796785)
BHF-UCL
RGD
PMID:12796785 GO_REF:0000024, MGI:2665153 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
neuroligin clustering involved in postsynaptic membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdh2 cadherin 2 IEA
ISO
GO_REF:0000107
(MGI:4457945|PMID:20534458)
Ensembl
RGD
PMID:20534458 GO_REF:0000107, MGI:4457945 NCBI chr18:8,146,971...8,366,037
Ensembl chr18:8,146,971...8,360,684
JBrowse link
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 IEA
ISO
GO_REF:0000107
(MGI:4457945|PMID:20534458)
Ensembl
RGD
PMID:20534458 GO_REF:0000107, MGI:4457945 NCBI chr 4:10,995,241...12,472,423
Ensembl chr 4:10,995,234...11,610,518
JBrowse link
G Nrxn1 neurexin 1 ISS
ISO
GO_REF:0000024
(MGI:5284797|PMID:15620359), (MGI:5285129|PMID:21424692)
BHF-UCL
RGD
PMID:15620359, PMID:21424692 GO_REF:0000024, MGI:5284797, MGI:5285129 NCBI chr 6:13,886,757...15,191,660
Ensembl chr 6:13,886,740...15,191,660
JBrowse link
G Nrxn2 neurexin 2 ISS
ISO
GO_REF:0000024
(MGI:5285129|PMID:21424692)
BHF-UCL
RGD
PMID:21424692 GO_REF:0000024, MGI:5285129 NCBI chr 1:221,792,191...221,908,047
Ensembl chr 1:221,792,221...221,908,049
JBrowse link
peroxisome membrane biogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pex11a peroxisomal biogenesis factor 11 alpha IDA RGD PMID:9548716 RGD:633614 NCBI chr 1:141,474,189...141,481,270
Ensembl chr 1:141,474,180...141,481,315
JBrowse link
G Pex16 peroxisomal biogenesis factor 16 ISO (PMID:12223482), (PMID:9837814) RGD PMID:9837814, PMID:12223482 NCBI chr 3:81,283,137...81,292,575
Ensembl chr 3:81,283,137...81,292,573
JBrowse link
G Pex19 peroxisomal biogenesis factor 19 ISO (PMID:10051604) RGD PMID:10051604 NCBI chr13:90,514,324...90,530,825
Ensembl chr13:90,514,336...90,530,349
JBrowse link
G Pex3 peroxisomal biogenesis factor 3 IDA RGD PMID:10848631 RGD:633588 NCBI chr 1:7,685,209...7,726,238
Ensembl chr 1:7,685,338...7,726,401
JBrowse link
plasma membrane raft assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flot1 flotillin 1 ISO (PMID:21399631) RGD PMID:21399631 NCBI chr20:3,427,890...3,438,418
Ensembl chr20:3,427,880...3,438,396
JBrowse link
postsynaptic membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cel carboxyl ester lipase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:7,134,021...7,141,522
Ensembl chr 3:7,134,021...7,141,522
JBrowse link
G Ephb2 Eph receptor B2 IDA
IMP
PMID:11136979 SynGO PMID:11136979, PMID:11136979 RGD:13702452, RGD:13702452 NCBI chr 5:155,024,478...155,143,539
Ensembl chr 5:155,022,493...155,204,456
JBrowse link
G Lrp4 LDL receptor related protein 4 ISS
ISO
GO_REF:0000024
(MGI:5295488|PMID:22038977)
UniProt
RGD
PMID:22038977 GO_REF:0000024, MGI:5295488 NCBI chr 3:80,362,643...80,416,684
Ensembl chr 3:80,362,858...80,416,679
JBrowse link
G Nlgn1 neuroligin 1 ISS
ISO
IBA
GO_REF:0000024
(MGI:2665153|PMID:12796785), (MGI:5284797|PMID:15620359)
PMID:21873635
BHF-UCL
RGD
PMID:12796785, PMID:15620359, PMID:21873635 GO_REF:0000024, MGI:2665153, MGI:5284797, RGD:13792537 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Nlgn2 neuroligin 2 IEA
ISO
IBA
ISS
GO_REF:0000107
(MGI:5284797|PMID:15620359)
PMID:21873635
GO_REF:0000024
Ensembl
RGD
BHF-UCL
PMID:15620359, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:5284797, RGD:13792537 NCBI chr10:56,431,586...56,444,847
Ensembl chr10:56,431,573...56,444,847
JBrowse link
G Nlgn3 neuroligin 3 IEA
ISO
IBA
ISS
GO_REF:0000107
(MGI:5320268|PMID:21642956)
PMID:21873635
GO_REF:0000024
Ensembl
RGD
BHF-UCL
PMID:21642956, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:5320268, RGD:13792537 NCBI chr  X:71,199,390...71,227,460
Ensembl chr  X:71,199,491...71,222,732
JBrowse link
G Nrxn1 neurexin 1 ISS
ISO
GO_REF:0000024
(MGI:5284797|PMID:15620359), (MGI:5285129|PMID:21424692)
BHF-UCL
RGD
PMID:15620359, PMID:21424692 GO_REF:0000024, MGI:5284797, MGI:5285129 NCBI chr 6:13,886,757...15,191,660
Ensembl chr 6:13,886,740...15,191,660
JBrowse link
G Nrxn2 neurexin 2 ISS
ISO
GO_REF:0000024
(MGI:5285129|PMID:21424692)
BHF-UCL
RGD
PMID:21424692 GO_REF:0000024, MGI:5285129 NCBI chr 1:221,792,191...221,908,047
Ensembl chr 1:221,792,221...221,908,049
JBrowse link
presynaptic membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cel carboxyl ester lipase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:7,134,021...7,141,522
Ensembl chr 3:7,134,021...7,141,522
JBrowse link
G Il1rapl1 interleukin 1 receptor accessory protein-like 1 ISO (MGI:5294265|PMID:21940441) RGD PMID:21940441 MGI:5294265 NCBI chr  X:55,439,388...57,004,865
Ensembl chr  X:55,439,578...56,765,893
JBrowse link
G Lrp4 LDL receptor related protein 4 ISS
ISO
GO_REF:0000024
(MGI:5295488|PMID:22038977)
UniProt
RGD
PMID:22038977 GO_REF:0000024, MGI:5295488 NCBI chr 3:80,362,643...80,416,684
Ensembl chr 3:80,362,858...80,416,679
JBrowse link
G Nlgn1 neuroligin 1 IDA
ISO
IBA
PMID:15797875
(MGI:2665153|PMID:12796785), (MGI:3694190|PMID:10892652), (MGI:5284797|PMID:15620359)
PMID:21873635
PMID:19730411
RGD PMID:10892652, PMID:12796785, PMID:15620359, PMID:15797875, PMID:21873635, PMID:19730411 MGI:2665153, MGI:3694190, MGI:5284797, RGD:8554205, RGD:13792537, RGD:8554379 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Nlgn2 neuroligin 2 IDA
ISO
IBA
IEA
PMID:15797875
(MGI:4352827|PMID:19016888), (MGI:5284797|PMID:15620359)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:15620359, PMID:19016888, PMID:15797875, PMID:21873635 GO_REF:0000107, MGI:4352827, MGI:5284797, RGD:8554205, RGD:13792537 NCBI chr10:56,431,586...56,444,847
Ensembl chr10:56,431,573...56,444,847
JBrowse link
G Nlgn3 neuroligin 3 IDA
IBA
PMID:15797875
PMID:21873635
BHF-UCL
GO_Central
PMID:15797875, PMID:21873635 RGD:8554205, RGD:13792537 NCBI chr  X:71,199,390...71,227,460
Ensembl chr  X:71,199,491...71,222,732
JBrowse link
G Nrxn1 neurexin 1 ISS
ISO
GO_REF:0000024
(MGI:2665153|PMID:12796785)
BHF-UCL
RGD
PMID:12796785 GO_REF:0000024, MGI:2665153 NCBI chr 6:13,886,757...15,191,660
Ensembl chr 6:13,886,740...15,191,660
JBrowse link
G Pten phosphatase and tensin homolog ISO (MGI:3772418|PMID:18082964) RGD PMID:18082964 MGI:3772418 NCBI chr 1:251,421,814...251,487,634
Ensembl chr 1:251,421,596...251,487,832
JBrowse link
G Ptprd protein tyrosine phosphatase, receptor type, D ISO (MGI:5294265|PMID:21940441) RGD PMID:21940441 MGI:5294265 NCBI chr 5:92,862,229...93,514,071
Ensembl chr 5:92,862,267...93,244,202
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    cellular process 18792
      cellular component organization or biogenesis 6789
        cellular component biogenesis 3291
          membrane biogenesis 44
            membrane assembly + 36
            membrane macromolecule biosynthetic process 0
            nuclear membrane biogenesis + 0
            peroxisome membrane biogenesis 4
            rhabdomere membrane biogenesis 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.