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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular macromolecule catabolic process
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Accession:GO:0044265 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a macromolecule, any large molecule including proteins, nucleic acids and carbohydrates, as carried out by individual cells.
Synonyms:exact_synonym: cellular biopolymer catabolic process;   cellular macromolecule breakdown;   cellular macromolecule catabolism;   cellular macromolecule degradation
 alt_id: GO:0034962


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cellular macromolecule catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln6 CLN6, transmembrane ER protein ISO MGI:MGI:2159328 (MGI:MGI:3656423|PMID:15647513) RGD PMID:15647513 MGI:MGI:3656423 NCBI chr 8:67,733,215...67,748,170
Ensembl chr 8:67,733,215...67,748,172
JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein ISO MGI:MGI:1856959 (MGI:MGI:3656423|PMID:15647513) RGD PMID:15647513 MGI:MGI:3656423 NCBI chr16:79,828,321...79,838,212
Ensembl chr16:79,828,324...79,838,212
JBrowse link
G Ppt1 palmitoyl-protein thioesterase 1 ISO MGI:MGI:2176390 (MGI:MGI:3656423|PMID:15647513) RGD PMID:15647513 MGI:MGI:3656423 NCBI chr 5:140,538,260...140,558,163
Ensembl chr 5:140,538,260...140,558,162
JBrowse link
3'-UTR-mediated mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 ISO (PMID:21336257) RGD PMID:21336257 NCBI chr 1:255,660,165...255,842,671
Ensembl chr 1:255,665,238...255,815,733
JBrowse link
G Dhx36 DEAH-box helicase 36 ISS
ISO
GO_REF:0000024
(PMID:26489465)
UniProt
RGD
PMID:26489465 GO_REF:0000024 NCBI chr 2:152,785,844...152,824,549
Ensembl chr 2:152,785,844...152,824,547
JBrowse link
G Dnd1 DND microRNA-mediated repression inhibitor 1 ISO (PMID:28297718) RGD PMID:28297718 NCBI chr18:29,608,588...29,611,212
Ensembl chr18:29,608,588...29,611,212
JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D IMP RGD PMID:20805360 RGD:10042974 NCBI chr14:11,256,163...11,274,684
Ensembl chr14:11,256,268...11,274,578
JBrowse link
G Khsrp KH-type splicing regulatory protein IEA
ISO
ISS
GO_REF:0000107
(PMID:16126846), (PMID:28275056)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:16126846, PMID:28275056 GO_REF:0000024, GO_REF:0000107 NCBI chr 9:10,013,795...10,023,670
Ensembl chr 9:10,013,854...10,022,924
JBrowse link
G Mov10 Mov10 RISC complex RNA helicase ISO (PMID:24726324) RGD PMID:24726324 NCBI chr 2:207,277,088...207,301,245
Ensembl chr 2:207,278,161...207,300,854
JBrowse link
G Plekhn1 pleckstrin homology domain containing N1 ISO
IBA
(PMID:29180010)
PMID:21873635
(MGI:MGI:6105829|PMID:27616329)
RGD PMID:27616329, PMID:29180010, PMID:21873635 MGI:MGI:6105829, RGD:13792537 NCBI chr 5:173,646,055...173,654,140
Ensembl chr 5:173,646,195...173,653,905
JBrowse link
G Qk quaking ISO (MGI:MGI:5316962|PMID:20631256) RGD PMID:20631256 MGI:MGI:5316962 NCBI chr 1:50,983,647...51,050,692 JBrowse link
G Rbm24 RNA binding motif protein 24 ISO (PMID:24375645) RGD PMID:24375645 NCBI chr17:18,671,037...18,682,876
Ensembl chr17:18,671,044...18,682,876
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 ISO (MGI:MGI:5706859|PMID:26000482), (MGI:MGI:5751631|PMID:26255671) RGD PMID:26000482, PMID:26255671 MGI:MGI:5706859, MGI:MGI:5751631 NCBI chr13:78,723,028...78,794,663
Ensembl chr13:78,722,763...78,789,266
JBrowse link
G Tardbp TAR DNA binding protein ISO (PMID:28335005) RGD PMID:28335005 NCBI chr 5:165,432,089...165,442,232
Ensembl chr 5:165,432,095...165,442,048
JBrowse link
G Trim71 tripartite motif containing 71 ISO (PMID:23125361) RGD PMID:23125361 NCBI chr 8:122,553,015...122,604,787
Ensembl chr 8:122,553,015...122,604,787
JBrowse link
G Upf1 UPF1, RNA helicase and ATPase ISO (PMID:24726324), (PMID:26255671) RGD PMID:24726324, PMID:26255671 NCBI chr16:20,824,888...20,845,632
Ensembl chr16:20,824,864...20,845,243
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A ISO
IBA
ISS
(PMID:19909337)
PMID:21873635
(MGI:MGI:3842851|PMID:19322177), (MGI:MGI:5706859|PMID:26000482), (MGI:MGI:5706909|PMID:23185455), (MGI:MGI:5707103|PMID:26134560), (MGI:MGI:5751631|PMID:26255671)
GO_REF:0000024
RGD
UniProt
PMID:19322177, PMID:19909337, PMID:23185455, PMID:26000482, PMID:26134560, PMID:26255671, PMID:21873635 GO_REF:0000024, MGI:MGI:3842851, MGI:MGI:5706859, MGI:MGI:5706909, MGI:MGI:5707103, MGI:MGI:5751631, RGD:13792537 NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165
JBrowse link
G Zc3h12d zinc finger CCCH type containing 12D ISO (MGI:MGI:5707103|PMID:26134560) RGD PMID:26134560 MGI:MGI:5707103 NCBI chr 1:1,937,620...1,972,919
Ensembl chr 1:1,938,419...1,972,918
JBrowse link
G Zfp36 zinc finger protein 36 IEA
ISO
ISS
GO_REF:0000107
(MGI:MGI:5784976|PMID:22701344), (MGI:MGI:5788345|PMID:27193233), (MGI:MGI:5795824|PMID:17288565)
(PMID:11719186), (PMID:14679154), (PMID:15187101), (PMID:15634918), (PMID:15687258), (PMID:15766526), (PMID:20221403), (PMID:27193233), (PMID:9703499)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:9703499, PMID:11719186, PMID:14679154, PMID:15187101, PMID:15634918, PMID:15687258, PMID:15766526, PMID:17288565, PMID:20221403, PMID:22701344, PMID:27193233 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5784976, MGI:MGI:5788345, MGI:MGI:5795824 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 ISS
ISO
GO_REF:0000024
(MGI:MGI:4818820|PMID:20622884), (MGI:MGI:5779430|PMID:27102483), (MGI:MGI:5784967|PMID:24733888), (MGI:MGI:5784968|PMID:24700863), (MGI:MGI:5784976|PMID:22701344)
(PMID:12198173), (PMID:15467755), (PMID:15538381), (PMID:15687258), (PMID:18326031), (PMID:19179481), (PMID:24700863), (PMID:25014217), (PMID:25106868), (PMID:26542173)
UniProt
RGD
PMID:12198173, PMID:15467755, PMID:15538381, PMID:15687258, PMID:18326031, PMID:19179481, PMID:20622884, PMID:22701344, PMID:24700863, PMID:24733888, PMID:25014217, PMID:25106868, PMID:26542173, PMID:27102483 GO_REF:0000024, MGI:MGI:4818820, MGI:MGI:5779430, MGI:MGI:5784967, MGI:MGI:5784968, MGI:MGI:5784976 NCBI chr 6:103,308,032...103,313,074
Ensembl chr 6:103,308,045...103,313,074
JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 ISO (PMID:25106868)
(MGI:MGI:4818820|PMID:20622884), (MGI:MGI:5784976|PMID:22701344)
RGD PMID:20622884, PMID:22701344, PMID:25106868 MGI:MGI:4818820, MGI:MGI:5784976 NCBI chr 6:7,417,416...7,423,447
Ensembl chr 6:7,417,425...7,421,456
JBrowse link
3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angel2 angel homolog 2 ISO
IBA
(PMID:22547059)
PMID:21873635
RGD PMID:22547059, PMID:21873635 RGD:13792537 NCBI chr13:109,505,021...109,520,976
Ensembl chr13:109,505,697...109,520,419
JBrowse link
G Boll boule homolog, RNA binding protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:61,836,517...61,975,640
Ensembl chr 9:64,480,031...64,573,660
Ensembl chr 9:64,480,031...64,573,660
JBrowse link
G Dazl deleted in azoospermia-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:12,633,983...12,651,017
Ensembl chr 9:12,633,990...12,650,938
JBrowse link
G Elavl1 ELAV like RNA binding protein 1 ISS
ISO
GO_REF:0000024
(MGI:MGI:6105829|PMID:27616329)
(PMID:14517288), (PMID:19029303), (PMID:26489465), (PMID:29180010)
UniProt
RGD
PMID:14517288, PMID:19029303, PMID:26489465, PMID:27616329, PMID:29180010 GO_REF:0000024, MGI:MGI:6105829 NCBI chr12:2,461,502...2,502,432
Ensembl chr12:2,461,502...2,502,432
JBrowse link
G Elavl4 ELAV like RNA binding protein 4 ISO
ISS
(PMID:12034726)
GO_REF:0000024
RGD
UniProt
PMID:12034726 GO_REF:0000024 NCBI chr 5:130,001,387...130,144,557
Ensembl chr 5:130,001,372...130,085,838
JBrowse link
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 ISO (MGI:MGI:5306322|PMID:12456657) RGD PMID:12456657 MGI:MGI:5306322
G Hnrnpc heterogeneous nuclear ribonucleoprotein C ISO (PMID:16010978) RGD PMID:16010978 NCBI chr15:28,486,605...28,517,353
Ensembl chr15:28,486,617...28,517,353
JBrowse link
G LOC108348134 protein boule-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:64,447,890...64,573,812
Ensembl chr 9:64,480,031...64,573,660
JBrowse link
G LOC681410 hypothetical protein LOC681410 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:6,909,166...6,912,145
Ensembl chr17:6,909,728...6,910,630
JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 ISO (PMID:14517288), (PMID:15014438), (PMID:20932473) RGD PMID:14517288, PMID:15014438, PMID:20932473 NCBI chr13:47,785,157...47,871,684
Ensembl chr13:47,785,161...47,831,110
JBrowse link
G Myd88 MYD88, innate immune signal transduction adaptor ISO (PMID:15294994) RGD PMID:15294994 NCBI chr 8:128,022,512...128,027,462
Ensembl chr 8:128,022,473...128,026,841
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 IDA RGD PMID:11696543 RGD:10045987 NCBI chr 7:12,663,965...12,673,723
Ensembl chr 7:12,663,965...12,673,718
JBrowse link
G Rbm10 RNA binding motif protein 10 ISO
IEA
(MGI:MGI:4367529|PMID:19508861)
GO_REF:0000107
RGD
Ensembl
PMID:19508861 GO_REF:0000107, MGI:MGI:4367529 NCBI chr  X:1,754,869...1,786,973
Ensembl chr  X:1,754,861...1,786,978
JBrowse link
G Rbm38 RNA binding motif protein 38 ISO (PMID:17050675) RGD PMID:17050675 NCBI chr 3:171,037,891...171,050,500
Ensembl chr 3:171,037,957...171,050,475
JBrowse link
G Tardbp TAR DNA binding protein ISO (PMID:17481916) RGD PMID:17481916 NCBI chr 5:165,432,089...165,442,232
Ensembl chr 5:165,432,095...165,442,048
JBrowse link
G Tirap TIR domain containing adaptor protein ISO (PMID:15294994) RGD PMID:15294994 NCBI chr 8:36,382,029...36,399,625
Ensembl chr 8:36,385,353...36,388,224
JBrowse link
G Zfp36 zinc finger protein 36 ISO
ISS
(PMID:15014438)
GO_REF:0000024
RGD
UniProt
PMID:15014438 GO_REF:0000024 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
acrosome matrix dispersal term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acr acrosin IMP RGD PMID:28859281 RGD:13464336 NCBI chr 7:130,541,320...130,548,356
Ensembl chr 7:130,542,202...130,548,356
JBrowse link
anaphase-promoting complex-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anapc1 anaphase promoting complex subunit 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:121,147,484...121,226,125
Ensembl chr 3:121,147,547...121,226,125
JBrowse link
G Anapc10 anaphase promoting complex subunit 10 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:31,814,686...31,867,928
Ensembl chr19:31,815,319...31,867,850
JBrowse link
G Anapc4 anaphase promoting complex subunit 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:60,471,962...60,503,803
Ensembl chr14:60,471,962...60,503,803
JBrowse link
G Anapc5 anaphase-promoting complex subunit 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:39,209,134...39,242,696
Ensembl chr12:39,209,129...39,242,690
JBrowse link
G Anapc7 anaphase promoting complex subunit 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:39,613,898...39,641,999
Ensembl chr12:39,614,733...39,641,285
JBrowse link
G Cdc16 cell division cycle 16 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:81,493,355...81,516,493
Ensembl chr16:81,493,355...81,516,493
JBrowse link
G Cdc20 cell division cycle 20 ISO
IBA
(PMID:17443180)
PMID:21873635
(PMID:18753608)
RGD PMID:17443180, PMID:18753608, PMID:21873635 RGD:13792537 NCBI chr 5:137,260,728...137,264,931
Ensembl chr 5:137,260,739...137,265,015
JBrowse link
G Cdc23 cell division cycle 23 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:27,430,924...27,452,569
Ensembl chr18:27,430,905...27,452,420
JBrowse link
G Cdc26 cell division cycle 26 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:78,252,168...78,267,137
Ensembl chr 5:78,253,397...78,267,063
JBrowse link
G Cdc27 cell division cycle 27 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:92,551,754...92,602,214
Ensembl chr10:92,554,081...92,602,082
JBrowse link
G Cul3 cullin 3 IEA
ISO
GO_REF:0000107
(PMID:10500095)
Ensembl
RGD
PMID:10500095 GO_REF:0000107 NCBI chr 9:86,044,485...86,129,066
Ensembl chr 9:86,044,485...86,129,329
JBrowse link
G Ecrg4 ECRG4 augurin precursor ISO
IBA
(MGI:MGI:4454240|PMID:20404145)
PMID:21873635
RGD PMID:20404145, PMID:21873635 MGI:MGI:4454240, RGD:13792537 NCBI chr 9:50,526,811...50,548,056
Ensembl chr 9:50,526,811...50,548,046
JBrowse link
G Fbxo31 F-box protein 31 ISO
ISS
(PMID:19412162)
GO_REF:0000024
RGD
UniProt
PMID:19412162 GO_REF:0000024 NCBI chr19:53,487,610...53,625,673
Ensembl chr19:53,487,613...53,625,673
JBrowse link
G Fzr1 fizzy and cell division cycle 20 related 1 ISO
IBA
(PMID:18662541), (PMID:21596315)
PMID:21873635
(PMID:18753608)
RGD PMID:18662541, PMID:18753608, PMID:21596315, PMID:21873635 RGD:13792537 NCBI chr 7:11,201,690...11,213,614
Ensembl chr 7:11,201,690...11,213,613
JBrowse link
G Ube2c ubiquitin-conjugating enzyme E2C ISO
IBA
(PMID:19822757), (PMID:9122200)
PMID:21873635
RGD PMID:9122200, PMID:19822757, PMID:21873635 RGD:13792537 NCBI chr 3:161,236,971...161,239,371
Ensembl chr 3:161,236,898...161,241,159
JBrowse link
G Ube2s ubiquitin-conjugating enzyme E2S ISS
ISO
GO_REF:0000024
(PMID:19820702), (PMID:19822757)
UniProt
RGD
PMID:19820702, PMID:19822757 GO_REF:0000024 NCBI chr 1:72,580,424...72,584,484
Ensembl chr 1:72,580,424...72,584,482
JBrowse link
apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dffa DNA fragmentation factor subunit alpha IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:165,922,893...165,935,822
Ensembl chr 5:165,922,915...165,935,821
JBrowse link
G Dffb DNA fragmentation factor subunit beta IDA
IEA
IBA
ISO
GO_REF:0000002
PMID:21873635
(PMID:15572351), (PMID:22253444)
InterPro
RGD
PMID:15572351, PMID:22253444, PMID:11425895, PMID:21873635 GO_REF:0000002, RGD:628524, RGD:13792537 NCBI chr 5:171,250,559...171,261,875
Ensembl chr 5:171,249,633...171,262,119
JBrowse link
G Dicer1 dicer 1 ribonuclease III IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Dnase1l3 deoxyribonuclease 1-like 3 TAS
IBA
ISO
PMID:21873635
(PMID:23229555)
(MGI:MGI:2385551|PMID:12050166)
RGD PMID:12050166, PMID:23229555, PMID:9665719, PMID:21873635 MGI:MGI:2385551, RGD:728743, RGD:13792537 NCBI chr15:18,710,492...18,736,476
Ensembl chr15:18,710,492...18,736,473
JBrowse link
G Dnase2 deoxyribonuclease 2, lysosomal IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:26,022,855...26,025,523
Ensembl chr19:26,022,849...26,025,532
JBrowse link
G Dnase2b deoxyribonuclease 2 beta IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:252,436,363...252,475,506
Ensembl chr 2:252,436,332...252,451,999
JBrowse link
G Endog endonuclease G ISO
IBA
MGI:MGI:3034030|MGI:MGI:3514265 (MGI:MGI:3029597|PMID:14663139)
PMID:21873635
RGD PMID:14663139, PMID:21873635 MGI:MGI:3029597, RGD:13792537 NCBI chr 3:8,741,833...8,744,414
Ensembl chr 3:8,741,766...8,744,592
JBrowse link
G Exog exo/endonuclease G IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:128,133,398...128,153,110
Ensembl chr 8:128,133,431...128,153,110
JBrowse link
G Foxl2 forkhead box L2 ISO (PMID:16153597) RGD PMID:16153597 NCBI chr 8:107,194,492...107,197,644
Ensembl chr 8:107,194,551...107,195,675
JBrowse link
cell wall macromolecule catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07067422.1 IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 9:44,576,918...44,586,358 JBrowse link
G LOC100910070 lysozyme g-like protein 1-like IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:44,605,306...44,611,810
Ensembl chr 9:44,605,304...44,617,210
JBrowse link
G LOC103693222 lysozyme g-like protein 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:44,574,626...44,590,028
Ensembl chr 9:44,499,800...44,509,201
JBrowse link
G Lyg1 lysozyme G1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:44,527,596...44,539,320
Ensembl chr 9:44,527,742...44,534,041
JBrowse link
G Lyg2 lysozyme G2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:44,497,508...44,509,921
Ensembl chr 9:44,499,800...44,509,201
JBrowse link
cellular protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chek2 checkpoint kinase 2 ISO (PMID:11298456) RGD PMID:11298456 NCBI chr12:51,845,574...51,878,098
Ensembl chr12:51,845,796...51,877,624
JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein ISO MGI:MGI:1856959 (MGI:MGI:53233|PMID:8389815) RGD PMID:8389815 MGI:MGI:53233 NCBI chr16:79,828,321...79,838,212
Ensembl chr16:79,828,324...79,838,212
JBrowse link
G Dab2ip DAB2 interacting protein IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:17389591)
Ensembl
UniProt
RGD
PMID:17389591 GO_REF:0000024, GO_REF:0000107 NCBI chr 3:14,889,263...15,060,286
Ensembl chr 3:14,889,510...15,060,286
JBrowse link
G Dennd3 DENN domain containing 3 ISO (MGI:MGI:5448516|PMID:21718402) RGD PMID:21718402 MGI:MGI:5448516 NCBI chr 7:114,724,644...114,812,471
Ensembl chr 7:114,724,610...114,812,708
JBrowse link
G Htra2 HtrA serine peptidase 2 ISO (PMID:17297443) RGD PMID:17297443 NCBI chr 4:113,883,671...113,886,833
Ensembl chr 4:113,883,670...113,886,994
JBrowse link
G Ide insulin degrading enzyme IDA
ISO
degradation of oxidized proteins in liver peroxisomes
(PMID:20364150)
RGD PMID:20364150, PMID:11235899 RGD:1627575 NCBI chr 1:255,914,465...256,014,168
Ensembl chr 1:255,914,447...256,013,495
JBrowse link
G Magec2 MAGE family member C2 ISO (PMID:20864041) RGD PMID:20864041 NCBI chr  X:145,353,959...145,362,427
Ensembl chr  X:145,357,553...145,362,426
JBrowse link
G Ppt1 palmitoyl-protein thioesterase 1 ISO MGI:MGI:2176390 (MGI:MGI:3612221|PMID:16368712) RGD PMID:16368712 MGI:MGI:3612221 NCBI chr 5:140,538,260...140,558,163
Ensembl chr 5:140,538,260...140,558,162
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase ISO (PMID:21376232)
(MGI:MGI:4948386|PMID:21376232)
RGD PMID:21376232 MGI:MGI:4948386 NCBI chr 1:48,880,015...50,069,998 JBrowse link
G Rab12 RAB12, member RAS oncogene family ISO
ISS
(MGI:MGI:5448516|PMID:21718402)
GO_REF:0000024
RGD
UniProt
PMID:21718402 GO_REF:0000024, MGI:MGI:5448516 NCBI chr 9:114,683,985...114,709,613
Ensembl chr 9:114,684,039...114,709,546
JBrowse link
G Ripk1 receptor interacting serine/threonine kinase 1 ISO (PMID:17389591) RGD PMID:17389591 NCBI chr17:31,537,580...31,569,904
Ensembl chr17:31,537,591...31,569,904
JBrowse link
G Rnf5 ring finger protein 5 ISO (PMID:19285439) RGD PMID:19285439 NCBI chr20:4,366,244...4,368,690
Ensembl chr20:4,366,246...4,368,693
JBrowse link
G Siah2 siah E3 ubiquitin protein ligase 2 ISO UniProtKB:P25054|UniProtKB:P41221 (PMID:12952940) RGD PMID:12952940 NCBI chr 2:148,874,151...148,891,900
Ensembl chr 2:148,874,151...148,891,900
JBrowse link
G Ube2g1 ubiquitin-conjugating enzyme E2G 1 ISO (PMID:21628527) RGD PMID:21628527 NCBI chr10:59,173,268...59,254,458
Ensembl chr10:59,173,268...59,254,453
JBrowse link
G Ube2g2 ubiquitin-conjugating enzyme E2G 2 ISO (PMID:21628527) RGD PMID:21628527 NCBI chr20:11,700,089...11,721,823
Ensembl chr20:11,700,089...11,721,838
JBrowse link
G Ube4b ubiquitination factor E4B ISO MGI:MGI:3611069 (MGI:MGI:3610695|PMID:16314518) RGD PMID:16314518 MGI:MGI:3610695 NCBI chr 5:166,156,033...166,259,069
Ensembl chr 5:166,156,033...166,259,069
JBrowse link
CRD-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx9 DExH-box helicase 9 ISO (PMID:19029303) RGD PMID:19029303 NCBI chr13:70,885,503...70,922,278
Ensembl chr13:70,885,504...70,922,245
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:19029303)
Ensembl
RGD
PMID:19029303, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr13:96,222,093...96,238,845
Ensembl chr13:96,225,912...96,238,572
JBrowse link
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 ISO (PMID:19029303) RGD PMID:19029303 NCBI chr10:83,774,178...83,823,323
Ensembl chr10:83,780,203...83,822,996
JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:19029303)
Ensembl
RGD
PMID:19029303, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 8:96,100,692...96,266,342
Ensembl chr 8:96,105,025...96,266,342
JBrowse link
G Ybx1 Y box binding protein 1 ISO
ISS
(PMID:19029303)
GO_REF:0000024
RGD
UniProt
PMID:19029303 GO_REF:0000024 NCBI chr 5:138,319,754...138,336,721
Ensembl chr 5:138,319,762...138,336,475
JBrowse link
CUT catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease ISO (PMID:19056938) RGD PMID:19056938 NCBI chr15:83,466,330...83,494,107
Ensembl chr15:83,466,428...83,494,423
JBrowse link
G Exosc10 exosome component 10 ISO (PMID:19056938) RGD PMID:19056938 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
G Exosc2 exosome component 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:10,151,734...10,161,997
Ensembl chr 3:10,151,284...10,161,989
JBrowse link
G Exosc3 exosome component 3 ISO
IBA
(PMID:19056938)
PMID:21873635
RGD PMID:19056938, PMID:21873635 RGD:13792537 NCBI chr 5:60,866,498...60,871,734
Ensembl chr 5:60,868,502...60,871,705
JBrowse link
cytoplasm protein quality control by the ubiquitin-proteasome system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf126 ring finger protein 126 ISO (PMID:24981174) RGD PMID:24981174 NCBI chr 7:12,820,796...12,828,325
Ensembl chr 7:12,820,840...12,828,334
JBrowse link
deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07066144.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 9:3,921,406...3,965,939 JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 ISO MGI:MGI:109382 (MGI:MGI:3807625|PMID:18625844) RGD PMID:18625844 MGI:MGI:3807625 NCBI chr16:54,899,452...54,918,616
Ensembl chr16:54,899,452...54,918,613
JBrowse link
G Dcp1a decapping mRNA 1A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:6,542,415...6,583,856
Ensembl chr16:6,542,216...6,587,619
JBrowse link
G Dcp1b decapping mRNA 1B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:151,249,654...151,287,018
Ensembl chr 4:151,250,041...151,285,702
JBrowse link
G Dcp2 decapping mRNA 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:35,489,274...35,671,676
Ensembl chr18:35,489,274...35,672,291
JBrowse link
G Dcps decapping enzyme, scavenger IBA
IEA
PMID:21873635
GO_REF:0000104
UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr 8:36,321,992...36,374,665
Ensembl chr 8:36,321,993...36,374,673
JBrowse link
G LOC100909830 mRNA-decapping enzyme 2-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:78,577,303...78,610,463
Ensembl chr18:78,584,312...78,607,983
JBrowse link
G LOC100912393 mRNA-decapping enzyme 2-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:3,940,948...3,965,964
Ensembl chr18:35,489,274...35,672,291
JBrowse link
G LOC103690064 m7GpppN-mRNA hydrolase-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:35,849,655...35,883,568
Ensembl chr18:35,850,132...35,876,585
JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:71,046,475...71,057,883
Ensembl chr16:71,046,475...71,057,883
JBrowse link
G Noct nocturnin ISO MGI:MGI:1298230 (MGI:MGI:3807625|PMID:18625844) RGD PMID:18625844 MGI:MGI:3807625 NCBI chr 2:140,286,661...140,306,869
Ensembl chr 2:140,286,661...140,306,869
JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 ISO
IBA
(MGI:MGI:3807625|PMID:18625844)
PMID:21873635
RGD PMID:18625844, PMID:21873635 MGI:MGI:3807625, RGD:13792537 NCBI chr12:9,214,116...9,331,901
Ensembl chr12:9,216,536...9,331,195
JBrowse link
G Patl1 PAT1 homolog 1, processing body mRNA decay factor ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:20584987), (PMID:20852261)
UniProt
RGD
PMID:20584987, PMID:20852261, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:228,337,756...228,369,719
Ensembl chr 1:228,337,767...228,369,761
JBrowse link
G Patl2 PAT1 homolog 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:114,065,814...114,075,404
Ensembl chr 3:114,066,840...114,074,803
JBrowse link
deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcp1a decapping mRNA 1A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:6,542,415...6,583,856
Ensembl chr16:6,542,216...6,587,619
JBrowse link
G Dcp1b decapping mRNA 1B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:151,249,654...151,287,018
Ensembl chr 4:151,250,041...151,285,702
JBrowse link
G Edc3 enhancer of mRNA decapping 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:62,482,126...62,527,665
Ensembl chr 8:62,482,140...62,526,202
JBrowse link
G Edc4 enhancer of mRNA decapping 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:37,852,659...37,864,651
Ensembl chr19:37,852,659...37,866,355
JBrowse link
DNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dffb DNA fragmentation factor subunit beta ISO (PMID:19944011) RGD PMID:19944011 NCBI chr 5:171,250,559...171,261,875
Ensembl chr 5:171,249,633...171,262,119
JBrowse link
G Dnase1 deoxyribonuclease 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:11,757,681...11,760,672
Ensembl chr10:11,757,682...11,760,620
JBrowse link
G Dnase1l1 deoxyribonuclease 1-like 1 IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr  X:156,429,521...156,438,066
Ensembl chr  X:156,429,585...156,438,066
JBrowse link
G Dnase1l2 deoxyribonuclease 1 like 2 ISO
IBA
MGI:MGI:5308556 (MGI:MGI:5308183|PMID:21307874)
PMID:21873635
RGD PMID:21307874, PMID:21873635 MGI:MGI:5308183, RGD:13792537 NCBI chr10:13,812,335...13,814,514
Ensembl chr10:13,812,707...13,814,304
JBrowse link
G Dnase1l3 deoxyribonuclease 1-like 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:18,710,492...18,736,476
Ensembl chr15:18,710,492...18,736,473
JBrowse link
G Trex1 three prime repair exonuclease 1 ISO MGI:MGI:3052754|MGI:MGI:5751220 (MGI:MGI:3834787|PMID:18724932), (MGI:MGI:4414715|PMID:19923437), (MGI:MGI:4848004|PMID:20871604), (MGI:MGI:5562498|PMID:23993650), (MGI:MGI:5637600|PMID:25848017) RGD PMID:18724932, PMID:19923437, PMID:20871604, PMID:23993650, PMID:25848017 MGI:MGI:3834787, MGI:MGI:4414715, MGI:MGI:4848004, MGI:MGI:5562498, MGI:MGI:5637600 NCBI chr 8:117,796,127...117,797,427
Ensembl chr 8:117,796,128...117,797,427
JBrowse link
DNA catabolic process, endonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnase1 deoxyribonuclease 1 ISO
IBA
ISS
(MGI:MGI:6094744|PMID:29191910)
PMID:21873635
RGD PMID:29191910, PMID:21873635, PMID:29191910 MGI:MGI:6094744, RGD:13792537, RGD:13464261 NCBI chr10:11,757,681...11,760,672
Ensembl chr10:11,757,682...11,760,620
JBrowse link
G Dnase1l1 deoxyribonuclease 1-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:156,429,521...156,438,066
Ensembl chr  X:156,429,585...156,438,066
JBrowse link
G Dnase1l2 deoxyribonuclease 1 like 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:13,812,335...13,814,514
Ensembl chr10:13,812,707...13,814,304
JBrowse link
G Dnase1l3 deoxyribonuclease 1-like 3 ISO
IBA
ISS
(MGI:MGI:6094744|PMID:29191910)
PMID:21873635
RGD PMID:29191910, PMID:21873635, PMID:29191910 MGI:MGI:6094744, RGD:13792537, RGD:13464261 NCBI chr15:18,710,492...18,736,476
Ensembl chr15:18,710,492...18,736,473
JBrowse link
G Endog endonuclease G IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:8,741,833...8,744,414
Ensembl chr 3:8,741,766...8,744,592
JBrowse link
G Exog exo/endonuclease G IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:128,133,398...128,153,110
Ensembl chr 8:128,133,431...128,153,110
JBrowse link
G Fbh1 F-box DNA helicase 1 ISO (PMID:23361013) RGD PMID:23361013 NCBI chr17:70,399,093...70,437,151
Ensembl chr17:70,399,049...70,437,144
JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit ISO (PMID:23361013) RGD PMID:23361013 NCBI chr 1:220,862,474...220,867,973
Ensembl chr 1:220,862,386...220,867,815
JBrowse link
G Rexo4 REX4 homolog, 3'-5' exonuclease ISO
IBA
(PMID:21602889)
PMID:21873635
RGD PMID:21602889, PMID:21873635 RGD:13792537 NCBI chr 3:5,500,578...5,510,908
Ensembl chr 3:5,500,589...5,510,908
JBrowse link
G Setmar SET domain and mariner transposase fusion gene ISO (PMID:20521842), (PMID:21491884), (PMID:24573677) RGD PMID:20521842, PMID:21491884, PMID:24573677 NCBI chr 4:140,092,346...140,104,495
Ensembl chr 4:140,092,352...140,105,316
JBrowse link
G Spo11 SPO11, initiator of meiotic double stranded breaks IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:170,991,573...171,008,226
Ensembl chr 3:170,994,038...171,013,185
JBrowse link
DNA catabolic process, exonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eri1 exoribonuclease 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:60,307,148...60,327,237
Ensembl chr16:60,307,148...60,327,236
JBrowse link
G Eri2 ERI1 exoribonuclease family member 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:189,540,145...189,549,891
Ensembl chr 1:189,540,145...189,549,891
JBrowse link
G Eri3 ERI1 exoribonuclease family member 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:136,406,009...136,533,408
Ensembl chr 5:136,406,130...136,533,389
JBrowse link
G Isg20 interferon stimulated exonuclease gene 20 ISO
IBA
(PMID:11401564)
PMID:21873635
RGD PMID:11401564, PMID:21873635 RGD:13792537 NCBI chr 1:140,602,553...140,608,892
Ensembl chr 1:140,601,791...140,608,946
JBrowse link
G Rexo4 REX4 homolog, 3'-5' exonuclease ISO
IBA
(PMID:21602889)
PMID:21873635
RGD PMID:21602889, PMID:21873635 RGD:13792537 NCBI chr 3:5,500,578...5,510,908
Ensembl chr 3:5,500,589...5,510,908
JBrowse link
G Trex1 three prime repair exonuclease 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:117,796,127...117,797,427
Ensembl chr 8:117,796,128...117,797,427
JBrowse link
G Trex2 three prime repair exonuclease 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:157,374,305...157,375,913
Ensembl chr  X:157,374,305...157,375,913
JBrowse link
G Xrn2 5'-3' exoribonuclease 2 ISO (PMID:15565158) RGD PMID:15565158 NCBI chr 3:141,224,858...141,298,272
Ensembl chr 3:141,225,290...141,298,265
JBrowse link
DNA replication, removal of RNA primer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dna2 DNA replication helicase/nuclease 2 IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Fen1 flap structure-specific endonuclease 1 ISO (PMID:18995831) RGD PMID:18995831 NCBI chr 1:226,251,516...226,256,160
Ensembl chr 1:226,251,518...226,255,886
JBrowse link
G Rnaseh1 ribonuclease H1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:47,916,188...47,925,582
Ensembl chr 6:47,916,188...47,925,571
JBrowse link
G Rnaseh2a ribonuclease H2, subunit A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:26,074,980...26,084,780
Ensembl chr19:26,074,987...26,084,679
JBrowse link
G Slc25a16 solute carrier family 25 member 16 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:27,283,383...27,308,069
Ensembl chr20:27,254,984...27,308,069
JBrowse link
elastin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cela1 chymotrypsin like elastase 1 ISO
IEA
(MGI:MGI:5641427|PMID:24793170)
GO_REF:0000107
RGD
Ensembl
PMID:24793170 GO_REF:0000107, MGI:MGI:5641427 NCBI chr 7:142,305,337...142,318,621
Ensembl chr 7:142,305,338...142,318,620
JBrowse link
G Ctsl cathepsin L ISS
ISO
GO_REF:0000024
(MGI:MGI:6259330|PMID:12417635)
UniProt
RGD
PMID:12417635 GO_REF:0000024, MGI:MGI:6259330 NCBI chr17:1,873,105...1,879,266
Ensembl chr17:1,872,848...1,879,279
JBrowse link
G Mmp12 matrix metallopeptidase 12 IEA
ISO
GO_REF:0000107
(PMID:29101312)
Ensembl
RGD
PMID:29101312 GO_REF:0000107 NCBI chr 8:5,594,717...5,616,494
Ensembl chr 8:5,606,592...5,616,493
JBrowse link
epidermal growth factor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab7a RAB7A, member RAS oncogene family ISO (PMID:18272684)
(PMID:16282324)
RGD PMID:16282324, PMID:18272684 NCBI chr 4:119,910,461...119,963,065
Ensembl chr 4:119,910,478...119,959,173
JBrowse link
G Snx5 sorting nexin 5 IDA RGD PMID:16487940 RGD:13508623 NCBI chr 3:138,378,032...138,397,944
Ensembl chr 3:138,378,202...138,397,870
JBrowse link
ER-associated misfolded protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aup1 AUP1, lipid droplet regulating VLDL assembly factor ISO
ISS
(PMID:21857022)
GO_REF:0000024
RGD
UniProt
PMID:21857022 GO_REF:0000024 NCBI chr 4:113,887,030...113,890,103
Ensembl chr 4:113,887,115...113,890,101
JBrowse link
G Bag6 BAG cochaperone 6 ISS
ISO
GO_REF:0000024
(PMID:23129660), (PMID:24981174)
UniProt
RGD
PMID:23129660, PMID:24981174 GO_REF:0000024 NCBI chr20:5,124,512...5,138,084
Ensembl chr20:5,125,349...5,138,084
JBrowse link
G Derl1 derlin 1 ISO (PMID:24089527) RGD PMID:24089527 NCBI chr 7:97,737,176...97,759,852
Ensembl chr 7:97,737,178...97,759,852
JBrowse link
G Pomt2 protein-O-mannosyltransferase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:111,137,329...111,176,991
Ensembl chr 6:111,135,349...111,176,918
JBrowse link
G Rnf185 ring finger protein 185 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:83,648,400...83,685,273
Ensembl chr14:83,648,402...83,685,273
JBrowse link
G Rnf5 ring finger protein 5 ISO
IBA
(PMID:19269966)
PMID:21873635
RGD PMID:19269966, PMID:21873635 RGD:13792537 NCBI chr20:4,366,244...4,368,690
Ensembl chr20:4,366,246...4,368,693
JBrowse link
G Sdf2 stromal cell derived factor 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:65,507,364...65,517,839
Ensembl chr10:65,507,364...65,517,838
JBrowse link
G Sdf2l1 stromal cell-derived factor 2-like 1 IMP PMID:23444373 MGI PMID:23444373 RGD:8554667 NCBI chr11:88,122,271...88,124,513
Ensembl chr11:88,122,271...88,124,513
JBrowse link
G Tor1a torsin family 1, member A ISO
ISS
(MGI:MGI:3712415|PMID:17200151)
GO_REF:0000024
RGD
UniProt
PMID:17200151 GO_REF:0000024, MGI:MGI:3712415 NCBI chr 3:9,800,322...9,807,318
Ensembl chr 3:9,800,322...9,807,328
JBrowse link
G Ufd1 ubiquitin recognition factor in ER associated degradation 1 ISO
IBA
(PMID:24089527)
PMID:21873635
RGD PMID:24089527, PMID:21873635 RGD:13792537 NCBI chr11:86,304,836...86,328,478
Ensembl chr11:86,304,815...86,328,469
JBrowse link
G Uggt1 UDP-glucose glycoprotein glucosyltransferase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:42,692,156...42,805,680
Ensembl chr 9:42,692,105...42,805,673
JBrowse link
G Vcp valosin-containing protein ISO
IBA
(PMID:24089527)
PMID:21873635
RGD PMID:24089527, PMID:21873635 RGD:13792537 NCBI chr 5:58,426,548...58,445,953
Ensembl chr 5:58,426,549...58,445,953
JBrowse link
ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brsk2 BR serine/threonine kinase 2 ISO
IEA
(PMID:23907667)
GO_REF:0000107
RGD
Ensembl
PMID:23907667 GO_REF:0000107 NCBI chr 1:214,918,757...214,940,883
Ensembl chr 1:214,927,172...214,947,624
JBrowse link
G Ccdc47 coiled-coil domain containing 47 ISS
ISO
GO_REF:0000024
(PMID:25009997)
UniProt
RGD
PMID:25009997 GO_REF:0000024 NCBI chr10:94,388,425...94,406,949
Ensembl chr10:94,388,430...94,406,949
JBrowse link
G Derl1 derlin 1 ISO (PMID:25239945) RGD PMID:25239945 NCBI chr 7:97,737,176...97,759,852
Ensembl chr 7:97,737,178...97,759,852
JBrowse link
G Dnajb12 DnaJ heat shock protein family (Hsp40) member B12 ISO (PMID:21148293), (PMID:21150129) RGD PMID:21148293, PMID:21150129 NCBI chr20:29,445,510...29,463,739
Ensembl chr20:29,445,510...29,463,738
JBrowse link
G Rcn3 reticulocalbin 3 IEA
ISO
ISS
GO_REF:0000107
(MGI:MGI:6201885|PMID:26252542)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:26252542 GO_REF:0000024, GO_REF:0000107, MGI:MGI:6201885 NCBI chr 1:101,076,971...101,086,198
Ensembl chr 1:101,076,898...101,086,198
JBrowse link
G Rhbdd1 rhomboid domain containing 1 ISO
ISS
(MGI:MGI:5437551|PMID:22795130)
GO_REF:0000024
RGD
UniProt
PMID:22795130 GO_REF:0000024, MGI:MGI:5437551 NCBI chr 9:88,110,731...88,229,462
Ensembl chr 9:88,110,731...88,229,479
JBrowse link
G Rnf139 ring finger protein 139 ISO
IBA
(PMID:25239945)
PMID:21873635
RGD PMID:25239945, PMID:21873635 RGD:13792537 NCBI chr 7:98,770,840...98,782,025
Ensembl chr 7:98,770,840...98,782,025
JBrowse link
G Rnf185 ring finger protein 185 ISO UniProtKB:Q99942 (PMID:24019521) RGD PMID:24019521 NCBI chr14:83,648,400...83,685,273
Ensembl chr14:83,648,402...83,685,273
JBrowse link
G Rnf5 ring finger protein 5 ISO (PMID:24019521) RGD PMID:24019521 NCBI chr20:4,366,244...4,368,690
Ensembl chr20:4,366,246...4,368,693
JBrowse link
G Sel1l SEL1L adaptor subunit of ERAD E3 ubiquitin ligase ISO
ISS
(MGI:MGI:5606246|PMID:25066055)
(PMID:21454652), (PMID:26471130)
GO_REF:0000024
RGD
UniProt
PMID:21454652, PMID:25066055, PMID:26471130 GO_REF:0000024, MGI:MGI:5606246 NCBI chr 6:115,572,683...115,616,904
Ensembl chr 6:115,572,649...115,616,859
JBrowse link
G Syvn1 synoviolin 1 ISO (MGI:MGI:5645202|PMID:21454652)
(PMID:22590560), (PMID:26471130)
RGD PMID:21454652, PMID:22590560, PMID:26471130 MGI:MGI:5645202 NCBI chr 1:221,409,281...221,416,229
Ensembl chr 1:221,409,271...221,417,886
JBrowse link
G Ubxn6 UBX domain protein 6 ISO (PMID:19275885) RGD PMID:19275885 NCBI chr 9:10,995,516...11,000,643
Ensembl chr 9:10,995,198...11,000,642
JBrowse link
G Vcp valosin-containing protein ISS
ISO
GO_REF:0000024
(PMID:20104022), (PMID:25088257)
UniProt
RGD
PMID:20104022, PMID:25088257 GO_REF:0000024 NCBI chr 5:58,426,548...58,445,953
Ensembl chr 5:58,426,549...58,445,953
JBrowse link
exonucleolytic catabolism of deadenylated mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot6 CCR4-NOT transcription complex, subunit 6 ISO
IEA
ISS
(PMID:20065043)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:20065043 GO_REF:0000024, GO_REF:0000107 NCBI chr10:35,144,291...35,195,126
Ensembl chr10:35,146,337...35,187,416
JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 ISO
IBA
(PMID:20065043), (PMID:21336257)
PMID:21873635
RGD PMID:20065043, PMID:21336257, PMID:21873635 RGD:13792537 NCBI chr16:54,899,452...54,918,616
Ensembl chr16:54,899,452...54,918,613
JBrowse link
G Cnot8 CCR4-NOT transcription complex, subunit 8 ISO
IBA
(PMID:20065043)
PMID:21873635
RGD PMID:20065043, PMID:21873635 RGD:13792537 NCBI chr10:43,538,150...43,551,271
Ensembl chr10:43,538,160...43,551,271
JBrowse link
G Exosc2 exosome component 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:10,151,734...10,161,997
Ensembl chr 3:10,151,284...10,161,989
JBrowse link
G Exosc3 exosome component 3 ISO
IBA
(PMID:11782436)
PMID:21873635
RGD PMID:11782436, PMID:21873635 RGD:13792537 NCBI chr 5:60,866,498...60,871,734
Ensembl chr 5:60,868,502...60,871,705
JBrowse link
G Exosc5 exosome component 5 ISO (PMID:11782436) RGD PMID:11782436 NCBI chr 1:82,452,104...82,461,607
Ensembl chr 1:82,452,469...82,461,606
JBrowse link
G Exosc7 exosome component 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:132,204,628...132,229,968
Ensembl chr 8:132,204,604...132,229,969
JBrowse link
G Exosc8 exosome component 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:143,925,643...143,932,240
Ensembl chr 2:143,925,546...143,931,940
JBrowse link
G Exosc9 exosome component 9 ISO
IBA
(PMID:11782436)
PMID:21873635
RGD PMID:11782436, PMID:21873635 RGD:13792537 NCBI chr 2:123,264,679...123,275,623
Ensembl chr 2:123,264,694...123,294,880
JBrowse link
glycoprotein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07002848.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:86,873,253...86,888,958 JBrowse link
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 ISO (MGI:MGI:3654428|PMID:16431915) RGD PMID:16431915 MGI:MGI:3654428 NCBI chr13:69,135,095...69,197,708
Ensembl chr13:69,135,128...69,199,511
JBrowse link
G Fbxo17 F-box protein 17 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:86,903,762...86,919,238
Ensembl chr 1:86,914,137...86,919,236
JBrowse link
G Fbxo2 F-box protein 2 ISO
IBA
(MGI:MGI:3573989|PMID:15723043), (MGI:MGI:4821082|PMID:12140560)
PMID:21873635
RGD PMID:12140560, PMID:15723043, PMID:21873635 MGI:MGI:3573989, MGI:MGI:4821082, RGD:13792537 NCBI chr 5:164,972,483...164,977,912
Ensembl chr 5:164,972,480...164,977,916
JBrowse link
G Fbxo44 F-box protein 44 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:164,962,921...164,972,273
Ensembl chr 5:164,963,433...164,971,903
JBrowse link
G Fbxo6 F-box protein 6 ISO
IBA
(MGI:MGI:3573989|PMID:15723043)
PMID:21873635
RGD PMID:15723043, PMID:21873635 MGI:MGI:3573989, RGD:13792537 NCBI chr 5:164,956,285...164,962,075
Ensembl chr 5:164,956,280...164,959,851
JBrowse link
G Manba mannosidase beta IBA
ISO
ISS
PMID:21873635
(MGI:MGI:3615066|PMID:16377659), (MGI:MGI:57603|PMID:3447593)
GO_REF:0000024
RGD
UniProt
PMID:3447593, PMID:16377659, PMID:21873635 GO_REF:0000024, MGI:MGI:3615066, MGI:MGI:57603, RGD:13792537 NCBI chr 2:240,668,213...240,760,264
Ensembl chr 2:240,668,195...240,760,261
JBrowse link
G Nccrp1 NCCRP1, F-box associated domain containing IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:85,558,420...85,559,652
NCBI chr 1:85,213,578...85,218,030
Ensembl chr 1:85,213,652...85,217,258
JBrowse link
G Neu2 neuraminidase 2 ISO
IEA
(PMID:14613940)
GO_REF:0000107
RGD
Ensembl
PMID:14613940 GO_REF:0000107 NCBI chr 9:94,702,095...94,724,903
Ensembl chr 9:94,702,129...94,724,902
JBrowse link
G Neu4 neuraminidase 4 ISO (PMID:15213228), (PMID:15847605)
(MGI:MGI:4361102|PMID:19506080), (MGI:MGI:5427293|PMID:22393058)
RGD PMID:15213228, PMID:15847605, PMID:19506080, PMID:22393058 MGI:MGI:4361102, MGI:MGI:5427293 NCBI chr 9:101,284,902...101,290,558
Ensembl chr 9:101,284,902...101,290,558
JBrowse link
G Ngly1 N-glycanase 1 ISO
IBA
ISS
(PMID:15358861)
PMID:21873635
GO_REF:0000024
(MGI:MGI:3054122|PMID:15358861)
RGD
UniProt
PMID:15358861, PMID:21873635 GO_REF:0000024, MGI:MGI:3054122, RGD:13792537 NCBI chr15:10,405,453...10,455,973
Ensembl chr15:10,405,164...10,455,956
JBrowse link
G Stt3b STT3 oligosaccharyltransferase complex catalytic subunit B ISO (PMID:22607976) RGD PMID:22607976 NCBI chr 8:123,303,910...123,370,729
Ensembl chr 8:123,293,057...123,371,257
JBrowse link
heparan sulfate proteoglycan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07030903.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:108,469,856...108,473,377 JBrowse link
G Gpc1 glypican 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:12732622)
Ensembl
UniProt
RGD
PMID:12732622 GO_REF:0000024, GO_REF:0000107 NCBI chr 9:99,998,275...100,026,818
Ensembl chr 9:99,998,275...100,026,818
JBrowse link
G Hpse heparanase IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:12213822)
Ensembl
UniProt
RGD
PMID:12213822 GO_REF:0000024, GO_REF:0000107 NCBI chr14:10,534,358...10,576,686
Ensembl chr14:10,534,423...10,575,224
JBrowse link
G Sgsh N-sulfoglucosamine sulfohydrolase ISO (PMID:15146460) RGD PMID:15146460 NCBI chr10:108,469,312...108,479,094 JBrowse link
histone mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase ISO (PMID:16086026) RGD PMID:16086026 NCBI chr 8:58,015,938...58,119,973
Ensembl chr 8:58,015,940...58,120,045
JBrowse link
G Dcp2 decapping mRNA 2 ISO (PMID:18172165) RGD PMID:18172165 NCBI chr18:35,489,274...35,671,676
Ensembl chr18:35,489,274...35,672,291
JBrowse link
G Eri1 exoribonuclease 1 NOT ISO
ISS
(PMID:18172165)
GO_REF:0000024
RGD
UniProt
PMID:18172165 GO_REF:0000024 NCBI chr16:60,307,148...60,327,237
Ensembl chr16:60,307,148...60,327,236
JBrowse link
G Exosc10 exosome component 10 ISO
IBA
(PMID:18172165)
PMID:21873635
RGD PMID:18172165, PMID:21873635 RGD:13792537 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
G Exosc4 exosome component 4 ISO (PMID:18172165) RGD PMID:18172165 NCBI chr 7:117,390,302...117,393,044
Ensembl chr 7:117,390,285...117,393,719
JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated ISO (PMID:18172165) RGD PMID:18172165 NCBI chr16:71,046,475...71,057,883
Ensembl chr16:71,046,475...71,057,883
JBrowse link
G Mtpap mitochondrial poly(A) polymerase ISO (PMID:18172165) RGD PMID:18172165 NCBI chr17:56,046,507...56,068,185
Ensembl chr17:56,046,509...56,068,125
JBrowse link
G Tent2 terminal nucleotidyltransferase 2 ISO
ISS
(PMID:18172165)
GO_REF:0000024
RGD
UniProt
PMID:18172165 GO_REF:0000024 NCBI chr 2:22,746,290...22,798,252
Ensembl chr 2:22,747,547...22,798,214
JBrowse link
G Tent4a terminal nucleotidyltransferase 4A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:36,400,056...36,433,238
Ensembl chr 1:36,400,443...36,433,238
JBrowse link
G Tent4b terminal nucleotidyltransferase 4B ISO
IBA
(PMID:18172165)
PMID:21873635
RGD PMID:18172165, PMID:21873635 RGD:13792537 NCBI chr19:19,771,289...19,834,759
Ensembl chr19:19,771,677...19,832,812
JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific NOT ISO
ISS
(PMID:18172165)
GO_REF:0000024
RGD
UniProt
PMID:18172165 GO_REF:0000024 NCBI chr 1:225,151,462...225,162,445
Ensembl chr 1:225,151,404...225,162,595
JBrowse link
G Tut4 terminal uridylyl transferase 4 NOT ISO (PMID:18172165) RGD PMID:18172165 NCBI chr 5:128,063,880...128,168,726
Ensembl chr 5:128,083,118...128,168,207
JBrowse link
G Tut7 terminal uridylyl transferase 7 NOT ISO (PMID:18172165) RGD PMID:18172165 NCBI chr17:5,225,854...5,279,674
Ensembl chr17:5,225,835...5,271,794
JBrowse link
G Upf1 UPF1, RNA helicase and ATPase ISO (PMID:16086026) RGD PMID:16086026 NCBI chr16:20,824,888...20,845,632
Ensembl chr16:20,824,864...20,845,243
JBrowse link
G Xrn1 5'-3' exoribonuclease 1 ISO (PMID:18172165) RGD PMID:18172165 NCBI chr 8:103,774,125...103,883,563
Ensembl chr 8:103,774,358...103,878,899
JBrowse link
low-density lipoprotein particle receptor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcsk9 proprotein convertase subtilisin/kexin type 9 ISS
ISO
GO_REF:0000024
(PMID:16912035), (PMID:18197702)
PMID:12552133
UniProt
RGD
PMID:16912035, PMID:18197702, PMID:12552133 GO_REF:0000024, RGD:629554 NCBI chr 5:126,031,368...126,053,726
Ensembl chr 5:126,031,368...126,053,726
JBrowse link
lysosomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc115 coiled-coil domain containing 115 ISO (PMID:28296633) RGD PMID:28296633 NCBI chr 9:37,774,876...37,778,839
Ensembl chr 9:37,775,311...37,779,967
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISO (MGI:MGI:1346962|PMID:10527801), (MGI:MGI:3757820|PMID:17855597) RGD PMID:10527801, PMID:17855597 MGI:MGI:1346962, MGI:MGI:3757820 NCBI chr 1:197,986,384...197,999,726
Ensembl chr 1:197,986,385...197,997,664
JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 ISO
ISS
(PMID:24880125)
GO_REF:0000024
RGD
UniProt
PMID:24880125 GO_REF:0000024 NCBI chr  X:124,722,628...124,766,079
Ensembl chr  X:124,722,628...124,766,044
JBrowse link
G Psap prosaposin IEA
ISO
GO_REF:0000107
(MGI:MGI:2671637|PMID:12813057)
Ensembl
RGD
PMID:12813057 GO_REF:0000107, MGI:MGI:2671637 NCBI chr20:29,831,302...29,856,876
Ensembl chr20:29,831,314...29,856,875
JBrowse link
G Tmem199 transmembrane protein 199 ISO
ISS
(PMID:28296633)
GO_REF:0000024
RGD
UniProt
PMID:28296633 GO_REF:0000024 NCBI chr10:65,775,721...65,780,293
Ensembl chr10:65,775,715...65,780,349
JBrowse link
G Vps13a vacuolar protein sorting 13 homolog A ISO (PMID:30709847) RGD PMID:30709847 NCBI chr 1:235,352,513...235,813,597
Ensembl chr 1:235,653,121...235,813,030
JBrowse link
maintenance of unfolded protein involved in ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag6 BAG cochaperone 6 ISO (PMID:21636303) RGD PMID:21636303 NCBI chr20:5,124,512...5,138,084
Ensembl chr20:5,125,349...5,138,084
JBrowse link
G Get4 guided entry of tail-anchored proteins factor 4 ISO (PMID:21636303) RGD PMID:21636303 NCBI chr12:17,469,112...17,486,709
Ensembl chr12:17,469,112...17,486,157
JBrowse link
G Usp13 ubiquitin specific peptidase 13 ISO (PMID:24424410) RGD PMID:24424410 NCBI chr 2:119,197,153...119,317,507
Ensembl chr 2:119,197,239...119,317,500
JBrowse link
mannose trimming involved in glycoprotein ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edem1 ER degradation enhancing alpha-mannosidase like protein 1 ISO (PMID:25092655) RGD PMID:25092655 NCBI chr 4:140,886,644...140,918,654
Ensembl chr 4:140,886,545...140,915,779
JBrowse link
G Edem2 ER degradation enhancing alpha-mannosidase like protein 2 ISO (PMID:25092655) RGD PMID:25092655 NCBI chr 3:151,232,741...151,258,559
Ensembl chr 3:151,232,751...151,258,580
JBrowse link
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 ISO (PMID:25092655)
(MGI:MGI:3654428|PMID:16431915)
RGD PMID:16431915, PMID:25092655 MGI:MGI:3654428 NCBI chr13:69,135,095...69,197,708
Ensembl chr13:69,135,128...69,199,511
JBrowse link
G Man1b1 mannosidase, alpha, class 1B, member 1 ISO (PMID:18003979), (PMID:21062743) RGD PMID:18003979, PMID:21062743 NCBI chr 3:2,547,259...2,569,051
Ensembl chr 3:2,547,986...2,569,049
JBrowse link
membrane protein proteolysis involved in retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hm13 histocompatibility minor 13 ISO (PMID:25239945) RGD PMID:25239945 NCBI chr 3:148,150,695...148,189,623
Ensembl chr 3:148,150,698...148,189,623
JBrowse link
G Rhbdd1 rhomboid domain containing 1 ISO (MGI:MGI:5437551|PMID:22795130) RGD PMID:22795130 MGI:MGI:5437551 NCBI chr 9:88,110,731...88,229,462
Ensembl chr 9:88,110,731...88,229,479
JBrowse link
miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 ISO
IBA
(PMID:24141620)
PMID:21873635
(MGI:MGI:5494337|PMID:23594738), (MGI:MGI:5603455|PMID:25119025)
RGD PMID:23594738, PMID:24141620, PMID:25119025, PMID:21873635 MGI:MGI:5494337, MGI:MGI:5603455, RGD:13792537 NCBI chr 9:93,767,837...94,161,106
Ensembl chr 9:93,660,680...94,160,760
JBrowse link
G Lin28a lin-28 homolog A ISO (PMID:18951094), (PMID:19703396)
(MGI:MGI:4359358|PMID:18604195), (MGI:MGI:4359360|PMID:18292307)
RGD PMID:18292307, PMID:18604195, PMID:18951094, PMID:19703396 MGI:MGI:4359358, MGI:MGI:4359360 NCBI chr 5:152,230,343...152,247,873
Ensembl chr 5:152,230,343...152,247,332
JBrowse link
G Lin28b lin-28 homolog B ISO (PMID:19703396) RGD PMID:19703396 NCBI chr20:50,482,536...50,580,273
Ensembl chr20:50,486,809...50,564,987
JBrowse link
G Parn poly(A)-specific ribonuclease ISO (PMID:25049417) RGD PMID:25049417 NCBI chr10:1,309,724...1,461,123
Ensembl chr10:1,308,414...1,461,269
JBrowse link
G Snd1 staphylococcal nuclease and tudor domain containing 1 ISO (PMID:28546213) RGD PMID:28546213 NCBI chr 4:55,772,377...56,171,669
Ensembl chr 4:55,772,377...56,171,668
JBrowse link
G Tent4b terminal nucleotidyltransferase 4B ISO (PMID:25049417) RGD PMID:25049417 NCBI chr19:19,771,289...19,834,759
Ensembl chr19:19,771,677...19,832,812
JBrowse link
G Tut4 terminal uridylyl transferase 4 ISO (PMID:19703396) RGD PMID:19703396 NCBI chr 5:128,063,880...128,168,726
Ensembl chr 5:128,083,118...128,168,207
JBrowse link
mitochondria-associated ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankzf1 ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:82,393,619...82,400,537
Ensembl chr 9:82,393,672...82,400,530
JBrowse link
mitochondrial mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde12 phosphodiesterase 12 IEA
ISO
GO_REF:0000107
(PMID:21245038), (PMID:21666256)
Ensembl
RGD
PMID:21245038, PMID:21666256 GO_REF:0000107 NCBI chr16:2,357,028...2,367,069
Ensembl chr16:2,357,028...2,367,253
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 ISO
IBA
(PMID:20691904)
PMID:21873635
(MGI:MGI:4881376|PMID:20691904)
RGD PMID:20691904, PMID:21873635 MGI:MGI:4881376, RGD:13792537 NCBI chr14:113,530,470...113,561,645
Ensembl chr14:113,530,470...113,561,645
JBrowse link
G Supv3l1 Suv3 like RNA helicase IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:19864255)
Ensembl
UniProt
RGD
PMID:19864255 GO_REF:0000024, GO_REF:0000107 NCBI chr20:32,057,530...32,080,170
Ensembl chr20:32,057,454...32,080,088
JBrowse link
mitochondrial mRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supv3l1 Suv3 like RNA helicase IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:19864255)
Ensembl
UniProt
RGD
PMID:19864255 GO_REF:0000024, GO_REF:0000107 NCBI chr20:32,057,530...32,080,170
Ensembl chr20:32,057,454...32,080,088
JBrowse link
mitochondrial ncRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supv3l1 Suv3 like RNA helicase IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:19864255)
Ensembl
UniProt
RGD
PMID:19864255 GO_REF:0000024, GO_REF:0000107 NCBI chr20:32,057,530...32,080,170
Ensembl chr20:32,057,454...32,080,088
JBrowse link
mitochondrial protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afg1l AFG1 like ATPase ISO (PMID:26759378) RGD PMID:26759378 NCBI chr20:47,038,824...47,208,812 JBrowse link
G Bnip3 BCL2 interacting protein 3 ISO (PMID:22292033) RGD PMID:22292033 NCBI chr 1:211,248,098...211,265,282
Ensembl chr 1:211,248,098...211,265,282
JBrowse link
G Bnip3l BCL2 interacting protein 3 like ISO (PMID:21264228) RGD PMID:21264228 NCBI chr15:43,643,897...43,667,123
Ensembl chr15:43,643,897...43,667,029
JBrowse link
G Proca1 protein interacting with cyclin A1 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr10:65,454,451...65,469,491
Ensembl chr10:65,454,658...65,469,490
JBrowse link
G Spata18 spermatogenesis associated 18 IEA
IBA
ISO
ISS
GO_REF:0000107
PMID:21873635
(PMID:21264221), (PMID:21264228)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21264221, PMID:21264228, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr14:37,081,529...37,108,245
Ensembl chr14:37,081,427...37,108,341
JBrowse link
G Yme1l1 YME1-like 1 ATPase ISO (PMID:27495975), (PMID:27786171) RGD PMID:27495975, PMID:27786171 NCBI chr17:89,701,899...89,741,919
Ensembl chr17:89,704,102...89,741,321
JBrowse link
mitochondrial RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 ISO
IBA
(PMID:18501193)
PMID:21873635
RGD PMID:18501193, PMID:21873635 RGD:13792537 NCBI chr14:113,530,470...113,561,645
Ensembl chr14:113,530,470...113,561,645
JBrowse link
mitochondrial RNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supv3l1 Suv3 like RNA helicase ISO
ISS
(PMID:19864255)
GO_REF:0000024
RGD
UniProt
PMID:19864255 GO_REF:0000024 NCBI chr20:32,057,530...32,080,170
Ensembl chr20:32,057,454...32,080,088
JBrowse link
modification-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07037998.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:37,026,408...37,026,872 JBrowse link
G AABR07043601.3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:30,819,943...30,821,999 JBrowse link
G AABR07043659.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:34,616,768...34,617,265 JBrowse link
G Chfr checkpoint with forkhead and ring finger domains ISO
ISS
(PMID:19182791)
GO_REF:0000024
RGD
UniProt
PMID:19182791 GO_REF:0000024 NCBI chr12:52,562,594...52,596,162
Ensembl chr12:52,562,597...52,596,076
JBrowse link
G Isg15 ISG15 ubiquitin-like modifier ISO
IBA
(MGI:MGI:3511369|PMID:15485925)
PMID:21873635
RGD PMID:15485925, PMID:21873635 MGI:MGI:3511369, RGD:13792537 NCBI chr 5:173,624,862...173,629,124
Ensembl chr 5:173,624,310...173,626,248
JBrowse link
G Nedd8 NEDD8 ubiquitin like modifier IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:34,340,607...34,352,673
Ensembl chr15:34,340,607...34,352,673
JBrowse link
G Rps27a ribosomal protein S27a IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:113,966,163...113,968,440
Ensembl chr14:113,966,611...113,968,268
Ensembl chr 5:113,966,611...113,968,268
JBrowse link
G Rps27a-ps28 ribosomal protein S27a, pseudogene 28 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:255,572,800...255,573,415
Ensembl chr 1:255,572,847...255,573,377
JBrowse link
G Rps27a-ps5 ribosomal protein S27a, pseudogene 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:37,026,437...37,026,904 JBrowse link
G Rps27a-ps6 ribosomal protein S27a, pseudogene 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:34,616,743...34,617,297 JBrowse link
G Uba52 ubiquitin A-52 residue ribosomal protein fusion product 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:20,668,925...20,671,127
Ensembl chr16:20,668,971...20,671,127
JBrowse link
G Uba7 ubiquitin-like modifier activating enzyme 7 ISO (MGI:MGI:3511369|PMID:15485925) RGD PMID:15485925 MGI:MGI:3511369 NCBI chr 8:116,754,178...116,766,765
Ensembl chr 8:116,754,178...116,764,126
JBrowse link
G Ubb ubiquitin B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:48,880,231...48,881,896
Ensembl chr10:48,881,049...48,881,881
JBrowse link
G Ubc ubiquitin C IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:36,638,457...36,642,734
Ensembl chr12:36,638,457...36,642,734
JBrowse link
G Ube2l6 ubiquitin-conjugating enzyme E2L 6 ISO (MGI:MGI:3511369|PMID:15485925) RGD PMID:15485925 MGI:MGI:3511369 NCBI chr 3:72,191,533...72,206,190
Ensembl chr 3:72,191,533...72,206,188
JBrowse link
mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC118772.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:70,484,134...70,506,963 JBrowse link
G Ago3 argonaute RISC catalytic component 3 ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Ago4 argonaute RISC component 4 ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
G Cnot10 CCR4-NOT transcription complex, subunit 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:122,634,681...122,696,466
Ensembl chr 8:122,634,685...122,679,720
JBrowse link
G Cnot9 CCR4-NOT transcription complex subunit 9 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:81,783,349...81,808,815
Ensembl chr 9:81,783,349...81,808,805
JBrowse link
G Dcp2 decapping mRNA 2 ISO (MGI:MGI:4849882|PMID:21070968)
(PMID:21070968), (PMID:28002401)
RGD PMID:21070968, PMID:28002401 MGI:MGI:4849882 NCBI chr18:35,489,274...35,671,676
Ensembl chr18:35,489,274...35,672,291
JBrowse link
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:93,767,837...94,161,106
Ensembl chr 9:93,660,680...94,160,760
JBrowse link
G Dxo decapping exoribonuclease ISS
ISO
GO_REF:0000024
(MGI:MGI:5488528|PMID:23523372), (MGI:MGI:6368104|PMID:28283058)
(PMID:29601584)
UniProt
RGD
PMID:23523372, PMID:28283058, PMID:29601584 GO_REF:0000024, MGI:MGI:5488528, MGI:MGI:6368104 NCBI chr20:4,517,307...4,519,391
Ensembl chr20:4,517,307...4,519,389
JBrowse link
G Hspa1a heat shock protein family A (Hsp70) member 1A ISO
ISS
(PMID:10205060)
GO_REF:0000024
RGD
UniProt
PMID:10205060 GO_REF:0000024 NCBI chr20:4,875,834...4,881,751
Ensembl chr20:4,877,324...4,879,779
JBrowse link
G Hspa1b heat shock protein family A (Hsp70) member 1B ISO
ISS
(PMID:10205060)
GO_REF:0000024
RGD
UniProt
PMID:10205060 GO_REF:0000024 NCBI chr20:4,877,638...4,880,112
Ensembl chr20:2,699,712...2,701,815
JBrowse link
G Khsrp KH-type splicing regulatory protein ISO
IEA
(MGI:MGI:5439239|PMID:22844247)
GO_REF:0000107
RGD
Ensembl
PMID:22844247 GO_REF:0000107, MGI:MGI:5439239 NCBI chr 9:10,013,795...10,023,670
Ensembl chr 9:10,013,854...10,022,924
JBrowse link
G LOC108348108 heat shock 70 kDa protein 1A ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr20:2,699,707...2,701,856
Ensembl chr20:4,877,324...4,879,779
Ensembl chr20:4,877,324...4,879,779
JBrowse link
G LOC688828 similar to Nucleoside diphosphate-linked moiety X motif 16 (Nudix motif 16) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:113,687,983...113,689,657
Ensembl chr 8:113,687,975...113,689,681
JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated ISO (PMID:12515382) RGD PMID:12515382 NCBI chr20:4,966,817...4,970,567
Ensembl chr20:4,966,817...4,970,568
JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated ISO (PMID:12515382) RGD PMID:12515382 NCBI chr 4:87,016,003...87,019,219
Ensembl chr 4:87,016,003...87,019,219
Ensembl chr 6:87,016,003...87,019,219
JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated ISO (PMID:12515382) RGD PMID:12515382 NCBI chr19:32,770,640...32,785,215
Ensembl chr19:32,770,655...32,785,215
JBrowse link
G Mettl14 methyltransferase like 14 ISO (MGI:MGI:5927282|PMID:28965759) RGD PMID:28965759 MGI:MGI:5927282 NCBI chr 2:227,566,811...227,583,047
Ensembl chr 2:227,566,815...227,582,895
JBrowse link
G Mettl16 methyltransferase like 16 ISO
IEA
(MGI:MGI:6114846|PMID:29262316)
GO_REF:0000107
RGD
Ensembl
PMID:29262316 GO_REF:0000107, MGI:MGI:6114846 NCBI chr10:61,626,595...61,682,947
Ensembl chr10:61,626,597...61,672,136
JBrowse link
G Mettl3 methyltransferase-like 3 ISO (MGI:MGI:5927282|PMID:28965759), (MGI:MGI:6094929|PMID:28792938), (MGI:MGI:6095345|PMID:28637692) RGD PMID:28637692, PMID:28792938, PMID:28965759 MGI:MGI:5927282, MGI:MGI:6094929, MGI:MGI:6095345 NCBI chr15:28,710,299...28,721,491
Ensembl chr15:28,710,300...28,721,127
JBrowse link
G Mirlet7b microRNA let-7b ISO MGI:MGI:2676795|MGI:MGI:3619050 (MGI:MGI:5439239|PMID:22844247) RGD PMID:22844247 MGI:MGI:5439239 NCBI chr 7:126,590,627...126,590,711
Ensembl chr 7:126,590,627...126,590,711
JBrowse link
G Mirlet7c1 microRNA let-7c-1 ISO MGI:MGI:2676794|MGI:MGI:3619050 (MGI:MGI:5439239|PMID:22844247) RGD PMID:22844247 MGI:MGI:5439239 NCBI chr11:16,052,873...16,052,966
Ensembl chr11:16,052,868...16,052,975
JBrowse link
G Mirlet7c2 microRNA let-7c-2 ISO MGI:MGI:2676794|MGI:MGI:2676795 (MGI:MGI:5439239|PMID:22844247) RGD PMID:22844247 MGI:MGI:5439239 NCBI chr 7:126,590,212...126,590,306
Ensembl chr 7:126,590,212...126,590,306
JBrowse link
G Nanos2 nanos C2HC-type zinc finger 2 ISO (MGI:MGI:4431145|PMID:20133598) RGD PMID:20133598 MGI:MGI:4431145 NCBI chr 1:79,894,450...79,895,910
Ensembl chr 1:79,894,450...79,895,910
JBrowse link
G Nudt12 nudix hydrolase 12 ISO (MGI:MGI:6368680|PMID:31101919) RGD PMID:31101919 MGI:MGI:6368680 NCBI chr 9:105,680,603...105,693,374
Ensembl chr 9:105,680,670...105,693,357
JBrowse link
G Nudt16 nudix hydrolase 16 ISO
IBA
(MGI:MGI:4849882|PMID:21070968)
PMID:21873635
(PMID:21070968), (PMID:21337011)
RGD PMID:21070968, PMID:21337011, PMID:21873635 MGI:MGI:4849882, RGD:13792537 NCBI chr 8:113,673,069...113,675,124
Ensembl chr 8:113,672,758...113,675,128
JBrowse link
G Nudt16l1 nudix hydrolase 16 like 1 NOT IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:10,829,866...10,831,782
Ensembl chr10:10,829,867...10,831,782
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 ISO (PMID:12721301), (PMID:16055741) RGD PMID:12721301, PMID:16055741 NCBI chr14:113,530,470...113,561,645
Ensembl chr14:113,530,470...113,561,645
JBrowse link
G Rida reactive intermediate imine deaminase A homolog ISS
ISO
GO_REF:0000024
(PMID:30930054)
UniProt
RGD
PMID:30930054 GO_REF:0000024 NCBI chr 7:73,256,506...73,270,308
Ensembl chr 7:73,256,508...73,270,308
JBrowse link
G Slfn14 schlafen family member 14 ISO (MGI:MGI:5705207|PMID:25996083) RGD PMID:25996083 MGI:MGI:5705207 NCBI chr10:70,493,340...70,504,810 JBrowse link
G Ythdf2 YTH N(6)-methyladenosine RNA binding protein 2 ISO (PMID:27558897), (PMID:30559377), (PMID:30930054)
(MGI:MGI:6316439|PMID:29855337), (MGI:MGI:6316688|PMID:30065315), (MGI:MGI:6317061|PMID:30150673)
RGD PMID:27558897, PMID:29855337, PMID:30065315, PMID:30150673, PMID:30559377, PMID:30930054 MGI:MGI:6316439, MGI:MGI:6316688, MGI:MGI:6317061 NCBI chr 5:150,364,490...150,390,173
Ensembl chr 5:150,365,101...150,390,099
JBrowse link
G Zc3h12d zinc finger CCCH type containing 12D ISO
IBA
MGI:MGI:5588370 (MGI:MGI:5567042|PMID:24415781)
PMID:21873635
RGD PMID:24415781, PMID:21873635 MGI:MGI:5567042, RGD:13792537 NCBI chr 1:1,937,620...1,972,919
Ensembl chr 1:1,938,419...1,972,918
JBrowse link
G Zfp36 zinc finger protein 36 ISS
ISO
GO_REF:0000024
(PMID:10330172), (PMID:10751406), (PMID:11782475), (PMID:20221403)
UniProt
RGD
PMID:10330172, PMID:10751406, PMID:11782475, PMID:20221403 GO_REF:0000024 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 IDA PMID:10751406 MGI PMID:10751406 RGD:1580602 NCBI chr 6:103,308,032...103,313,074
Ensembl chr 6:103,308,045...103,313,074
JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 ISO (MGI:MGI:5320815|PMID:22367205) RGD PMID:22367205 MGI:MGI:5320815 NCBI chr 6:7,417,416...7,423,447
Ensembl chr 6:7,417,425...7,421,456
JBrowse link
G Zhx2 zinc fingers and homeoboxes 2 ISO (MGI:MGI:49288|PMID:1370712) RGD PMID:1370712 MGI:MGI:49288 NCBI chr 7:97,559,653...97,707,872
Ensembl chr 7:97,559,841...97,695,739
JBrowse link
mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf1 CUGBP, Elav-like family member 1 IDA PMID:30508596 ARUK-UCL PMID:30508596 RGD:38501076 NCBI chr 3:79,768,900...79,844,548
Ensembl chr 3:79,823,945...79,842,082
JBrowse link
G Cnot6l CCR4-NOT transcription complex, subunit 6-like ISO (MGI:MGI:3828348|PMID:17452450) RGD PMID:17452450 MGI:MGI:3828348 NCBI chr14:15,059,101...15,148,255
Ensembl chr14:15,059,387...15,146,586
JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase ISS
ISO
IEA
GO_REF:0000024
(PMID:28002401), (PMID:30197295)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:28002401, PMID:30197295 GO_REF:0000024, GO_REF:0000107 NCBI chr19:16,774,549...17,115,098
Ensembl chr19:16,772,744...17,115,113
JBrowse link
G Gigyf2 GRB10 interacting GYF protein 2 ISO (PMID:27157137) RGD PMID:27157137 NCBI chr 9:94,425,191...94,550,431
Ensembl chr 9:94,425,252...94,550,431
JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R IMP RGD PMID:15798208 RGD:9854643 NCBI chr 5:154,668,194...154,699,967
Ensembl chr 5:154,668,179...154,699,966
JBrowse link
G Mettl14 methyltransferase like 14 ISO (MGI:MGI:5559905|PMID:24394384), (MGI:MGI:5927282|PMID:28965759) RGD PMID:24394384, PMID:28965759 MGI:MGI:5559905, MGI:MGI:5927282 NCBI chr 2:227,566,811...227,583,047
Ensembl chr 2:227,566,815...227,582,895
JBrowse link
G Mettl16 methyltransferase like 16 ISO
IEA
(MGI:MGI:6114846|PMID:29262316)
GO_REF:0000107
RGD
Ensembl
PMID:29262316 GO_REF:0000107, MGI:MGI:6114846 NCBI chr10:61,626,595...61,682,947
Ensembl chr10:61,626,597...61,672,136
JBrowse link
G Mettl3 methyltransferase-like 3 ISO (MGI:MGI:5559905|PMID:24394384), (MGI:MGI:5621227|PMID:25569111), (MGI:MGI:5621254|PMID:25456834), (MGI:MGI:5927282|PMID:28965759), (MGI:MGI:6094929|PMID:28792938), (MGI:MGI:6095345|PMID:28637692) RGD PMID:24394384, PMID:25456834, PMID:25569111, PMID:28637692, PMID:28792938, PMID:28965759 MGI:MGI:5559905, MGI:MGI:5621227, MGI:MGI:5621254, MGI:MGI:5927282, MGI:MGI:6094929, MGI:MGI:6095345 NCBI chr15:28,710,299...28,721,491
Ensembl chr15:28,710,300...28,721,127
JBrowse link
G Pum1 pumilio RNA-binding family member 1 ISO (MGI:MGI:5640888|PMID:25768905) RGD PMID:25768905 MGI:MGI:5640888 NCBI chr 5:148,781,239...148,911,776
Ensembl chr 5:148,781,222...148,911,803
JBrowse link
G Rbm24 RNA binding motif protein 24 ISO (PMID:29104163) RGD PMID:29104163 NCBI chr17:18,671,037...18,682,876
Ensembl chr17:18,671,044...18,682,876
JBrowse link
G Rida reactive intermediate imine deaminase A homolog ISS
ISO
GO_REF:0000024
(PMID:30930054)
UniProt
RGD
PMID:30930054 GO_REF:0000024 NCBI chr 7:73,256,506...73,270,308
Ensembl chr 7:73,256,508...73,270,308
JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 IEA
ISO
GO_REF:0000107
(MGI:MGI:6271078|PMID:29353861)
Ensembl
RGD
PMID:29353861 GO_REF:0000107, MGI:MGI:6271078 NCBI chr18:1,273,490...1,390,790
Ensembl chr18:1,273,453...1,390,190
JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 ISO (MGI:MGI:6271078|PMID:29353861) RGD PMID:29353861 MGI:MGI:6271078 NCBI chr 6:42,180,864...42,289,910
Ensembl chr 6:42,180,894...42,289,908
JBrowse link
G Ythdf1 YTH N(6)-methyladenosine RNA binding protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:176,415,911...176,431,423
Ensembl chr 3:176,415,914...176,431,423
JBrowse link
G Ythdf2 YTH N(6)-methyladenosine RNA binding protein 2 ISO
IBA
(PMID:27558897), (PMID:28106072), (PMID:30559377), (PMID:30930054)
PMID:21873635
(MGI:MGI:6316439|PMID:29855337), (MGI:MGI:6316688|PMID:30065315), (MGI:MGI:6317061|PMID:30150673)
RGD PMID:27558897, PMID:28106072, PMID:29855337, PMID:30065315, PMID:30150673, PMID:30559377, PMID:30930054, PMID:21873635 MGI:MGI:6316439, MGI:MGI:6316688, MGI:MGI:6317061, RGD:13792537 NCBI chr 5:150,364,490...150,390,173
Ensembl chr 5:150,365,101...150,390,099
JBrowse link
G Ythdf3 YTH N(6)-methyladenosine RNA binding protein 3 ISO
IBA
(PMID:28106072)
PMID:21873635
RGD PMID:28106072, PMID:21873635 RGD:13792537 NCBI chr 2:100,677,388...100,711,365
Ensembl chr 2:100,677,411...100,710,417
JBrowse link
mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 ISO (MGI:MGI:3057047|PMID:15480992) RGD PMID:15480992 MGI:MGI:3057047 NCBI chr 4:155,386,367...155,414,034
Ensembl chr 4:155,386,711...155,401,480
JBrowse link
G Axin2 axin 2 ISO
IEA
(PMID:17072303)
GO_REF:0000107
RGD
Ensembl
PMID:17072303 GO_REF:0000107 NCBI chr10:97,212,483...97,238,824
Ensembl chr10:97,212,432...97,239,642
JBrowse link
G Cirbp cold inducible RNA binding protein ISO
ISS
(PMID:11574538)
GO_REF:0000024
RGD
UniProt
PMID:11574538 GO_REF:0000024 NCBI chr 7:12,400,066...12,405,054
Ensembl chr 7:12,401,207...12,405,022
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO MGI:MGI:3589208 (MGI:MGI:5439239|PMID:22844247) RGD PMID:22844247 MGI:MGI:5439239 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Dnd1 DND microRNA-mediated repression inhibitor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:29,608,588...29,611,212
Ensembl chr18:29,608,588...29,611,212
JBrowse link
G E2f1 E2F transcription factor 1 ISO (PMID:15766563) RGD PMID:15766563 NCBI chr 3:150,062,895...150,073,721
Ensembl chr 3:150,047,826...150,073,721
JBrowse link
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 ISO (PMID:24335285), (PMID:32354837) RGD PMID:24335285, PMID:32354837 NCBI chr14:83,412,843...83,455,694
Ensembl chr14:83,412,968...83,455,456
JBrowse link
G Elavl1 ELAV like RNA binding protein 1 ISO
ISS
(PMID:19029303), (PMID:21613615), (PMID:31358969)
(MGI:MGI:3037407|PMID:14976220), (MGI:MGI:5287957|PMID:21613615), (MGI:MGI:5559905|PMID:24394384), (MGI:MGI:5922838|PMID:27609837)
GO_REF:0000024
RGD
UniProt
PMID:14976220, PMID:19029303, PMID:21613615, PMID:24394384, PMID:27609837, PMID:31358969 GO_REF:0000024, MGI:MGI:3037407, MGI:MGI:5287957, MGI:MGI:5559905, MGI:MGI:5922838 NCBI chr12:2,461,502...2,502,432
Ensembl chr12:2,461,502...2,502,432
JBrowse link
G Fus FUS RNA binding protein ISO (PMID:27378374) RGD PMID:27378374 NCBI chr 1:199,412,805...199,426,705
Ensembl chr 1:199,412,834...199,426,702
JBrowse link
G Gdnf glial cell derived neurotrophic factor ISO
ISS
IEA
(PMID:12358785)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:12358785 GO_REF:0000024, GO_REF:0000107 NCBI chr 2:56,884,181...56,912,964
Ensembl chr 2:56,887,987...56,910,238
JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D IDA RGD PMID:15192077 RGD:1357938 NCBI chr14:11,256,163...11,274,684
Ensembl chr14:11,256,268...11,274,578
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U ISO (PMID:17174306) RGD PMID:17174306 NCBI chr13:96,222,093...96,238,845
Ensembl chr13:96,225,912...96,238,572
JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator ISO (PMID:25940091), (PMID:28673543) RGD PMID:25940091, PMID:28673543 NCBI chr10:43,435,738...43,501,186
Ensembl chr10:43,446,526...43,498,066
JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 ISO MGI:MGI:2179724 (MGI:MGI:2158083|PMID:11741878) RGD PMID:11741878 MGI:MGI:2158083 NCBI chr13:47,785,157...47,871,684
Ensembl chr13:47,785,161...47,831,110
JBrowse link
G Meioc meiosis specific with coiled-coil domain ISO
IBA
(MGI:MGI:5770021|PMID:26742488)
PMID:21873635
RGD PMID:26742488, PMID:21873635 MGI:MGI:5770021, RGD:13792537 NCBI chr10:90,622,954...90,641,883
Ensembl chr10:90,622,992...90,642,151
JBrowse link
G Mtor mechanistic target of rapamycin kinase IMP RGD PMID:21073857 RGD:10040969 NCBI chr 5:165,263,813...165,373,967
Ensembl chr 5:165,263,800...165,373,967
JBrowse link
G Noct nocturnin ISO
ISS
(MGI:MGI:5308514|PMID:22073225)
GO_REF:0000024
RGD
UniProt
PMID:22073225 GO_REF:0000024, MGI:MGI:5308514 NCBI chr 2:140,286,661...140,306,869
Ensembl chr 2:140,286,661...140,306,869
JBrowse link
G Qk quaking IMP RGD PMID:16855020 RGD:10045995 NCBI chr 1:50,983,647...51,050,692 JBrowse link
G Rbm24 RNA binding motif protein 24 ISO (PMID:29104163) RGD PMID:29104163 NCBI chr17:18,671,037...18,682,876
Ensembl chr17:18,671,044...18,682,876
JBrowse link
G Rbm46 RNA binding motif protein 46 ISO (MGI:MGI:5644240|PMID:25397698) RGD PMID:25397698 MGI:MGI:5644240 NCBI chr 2:181,828,931...181,874,223
Ensembl chr 2:181,831,244...181,874,223
JBrowse link
G Slc11a1 solute carrier family 11 member 1 ISO
IEA
MGI:MGI:1857755 (MGI:MGI:85148|PMID:9009318)
GO_REF:0000107
RGD
Ensembl
PMID:9009318 GO_REF:0000107, MGI:MGI:85148 NCBI chr 9:81,655,590...81,666,697
Ensembl chr 9:81,655,629...81,666,706
JBrowse link
G Taf15 TATA-box binding protein associated factor 15 ISO (PMID:27378374) RGD PMID:27378374 NCBI chr10:70,689,863...70,721,892
Ensembl chr10:70,689,863...70,721,892
JBrowse link
G Tent5a terminal nucleotidyltransferase 5A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:92,935,474...92,942,267
Ensembl chr 8:92,937,739...92,942,076
JBrowse link
G Tent5b terminal nucleotidyltransferase 5B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:151,692,068...151,699,381
Ensembl chr 5:151,692,108...151,700,246
JBrowse link
G Tent5c terminal nucleotidyltransferase 5C ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:MGI:5926094|PMID:28931820)
(PMID:28931820)
UniProt
RGD
PMID:28931820, PMID:21873635 GO_REF:0000024, MGI:MGI:5926094, RGD:13792537 NCBI chr 2:202,797,766...202,816,562
Ensembl chr 2:202,798,198...202,816,562
JBrowse link
G Tent5d terminal nucleotidyltransferase 5D IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:78,911,641...78,994,467
Ensembl chr  X:78,991,223...78,992,735
JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 ISO
ISS
(PMID:18794151)
GO_REF:0000024
RGD
UniProt
PMID:18794151 GO_REF:0000024 NCBI chr 5:144,178,248...144,221,318
Ensembl chr 5:144,179,023...144,221,263
JBrowse link
G Vegfa vascular endothelial growth factor A IDA RGD PMID:12881220 RGD:1580563 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
G Vip vasoactive intestinal peptide ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 1:42,169,307...42,177,582
Ensembl chr 1:42,169,501...42,177,582
JBrowse link
G Ybx1 Y box binding protein 1 ISO
ISS
(PMID:31358969)
GO_REF:0000024
RGD
UniProt
PMID:31358969 GO_REF:0000024 NCBI chr 5:138,319,754...138,336,721
Ensembl chr 5:138,319,762...138,336,475
JBrowse link
G Ybx2 Y box binding protein 2 ISO MGI:MGI:3576937 (MGI:MGI:3696301|PMID:17035640) RGD PMID:17035640 MGI:MGI:3696301 NCBI chr10:56,546,689...56,552,339
Ensembl chr10:56,546,710...56,551,863
JBrowse link
ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent4b terminal nucleotidyltransferase 4B ISO (PMID:26950371) RGD PMID:26950371 NCBI chr19:19,771,289...19,834,759
Ensembl chr19:19,771,677...19,832,812
JBrowse link
negative regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl16 methyltransferase like 16 ISO
IEA
(PMID:28525753)
GO_REF:0000107
RGD
Ensembl
PMID:28525753 GO_REF:0000107 NCBI chr10:61,626,595...61,682,947
Ensembl chr10:61,626,597...61,672,136
JBrowse link
negative regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dffa DNA fragmentation factor subunit alpha ISO (PMID:15572351)
MGI:MGI:2179456 (MGI:MGI:2182584|PMID:10601318), (MGI:MGI:3029597|PMID:14663139)
RGD PMID:10601318, PMID:14663139, PMID:15572351 MGI:MGI:2182584, MGI:MGI:3029597 NCBI chr 5:165,922,893...165,935,822
Ensembl chr 5:165,922,915...165,935,821
JBrowse link
G Nmnat1 nicotinamide nucleotide adenylyltransferase 1 IMP RGD PMID:27184051 RGD:13781945 NCBI chr 5:166,409,460...166,430,291
Ensembl chr 5:166,409,461...166,430,254
JBrowse link
G Pam16 presequence translocase associated motor 16 IDA RGD PMID:24069394 RGD:13462066 NCBI chr10:11,146,359...11,153,936
Ensembl chr10:11,146,359...11,153,936
JBrowse link
negative regulation of cellular protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atraid all-trans retinoic acid-induced differentiation factor ISO (PMID:21723284) RGD PMID:21723284 NCBI chr 6:26,680,628...26,685,185
Ensembl chr 6:26,680,598...26,685,235
JBrowse link
G Cdk2 cyclin dependent kinase 2 ISO (PMID:15750306) RGD PMID:15750306 NCBI chr 7:3,124,953...3,132,533
Ensembl chr 7:3,124,954...3,132,457
JBrowse link
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:16173922)
Ensembl
UniProt
RGD
PMID:16173922 GO_REF:0000024, GO_REF:0000107 NCBI chr10:84,780,644...84,789,800
Ensembl chr10:84,780,608...84,789,832
JBrowse link
G Dab2ip DAB2 interacting protein IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:19903888)
Ensembl
UniProt
RGD
PMID:19903888 GO_REF:0000024, GO_REF:0000107 NCBI chr 3:14,889,263...15,060,286
Ensembl chr 3:14,889,510...15,060,286
JBrowse link
G F13b coagulation factor XIII B chain ISO MGI:MGI:5645820 (MGI:MGI:5645809|PMID:18224415) RGD PMID:18224415 MGI:MGI:5645809 NCBI chr13:56,598,891...56,623,132
Ensembl chr13:56,598,957...56,623,124
JBrowse link
G Nell1 neural EGFL like 1 ISO
ISS
(PMID:21723284)
GO_REF:0000024
RGD
UniProt
PMID:21723284 GO_REF:0000024 NCBI chr 1:105,348,577...106,218,970
Ensembl chr 1:105,349,069...106,218,958
JBrowse link
G Rgp1 RGP1 homolog, RAB6A GEF complex partner 1 ISO (PMID:23091056) RGD PMID:23091056 NCBI chr 5:59,080,290...59,088,777
Ensembl chr 5:59,080,765...59,088,523
JBrowse link
G Ric1 RIC1 homolog, RAB6A GEF complex partner 1 ISO (PMID:23091056) RGD PMID:23091056 NCBI chr 1:247,688,778...247,784,219
Ensembl chr 1:247,688,789...247,781,875
JBrowse link
negative regulation of DNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rgn regucalcin IDA RGD PMID:2001740 RGD:9590215 NCBI chr  X:1,833,484...1,848,904
Ensembl chr  X:1,833,492...1,848,904
JBrowse link
negative regulation of elastin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cst3 cystatin C ISO (PMID:10545518) RGD PMID:10545518 NCBI chr 3:143,219,671...143,223,544
Ensembl chr 3:143,219,686...143,223,615
JBrowse link
negative regulation of ER-associated ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sgta small glutamine rich tetratricopeptide repeat containing alpha ISO
ISS
(PMID:23129660)
GO_REF:0000024
RGD
UniProt
PMID:23129660 GO_REF:0000024 NCBI chr 7:11,521,949...11,538,691
Ensembl chr 7:11,521,998...11,539,319
JBrowse link
G Svip small VCP interacting protein IC
IBA
ISO
PMID:17000876
PMID:21873635
(PMID:17872946)
RGD PMID:17872946, PMID:17000876, PMID:21873635 RGD:10047192, RGD:13792537 NCBI chr 1:107,368,117...107,373,807
Ensembl chr 1:107,368,117...107,373,807
JBrowse link
G Usp14 ubiquitin specific peptidase 14 ISO (PMID:19135427) RGD PMID:19135427 NCBI chr18:1,178,785...1,216,573
Ensembl chr18:1,178,787...1,216,409
JBrowse link
negative regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp11 aquaporin 11 ISS
ISO
GO_REF:0000024
(MGI:MGI:3813160|PMID:18606867)
UniProt
RGD
PMID:18606867 GO_REF:0000024, MGI:MGI:3813160 NCBI chr 1:162,703,394...162,713,560
Ensembl chr 1:162,703,442...162,713,610
JBrowse link
G Ubxn1 UBX domain protein 1 ISO (PMID:21135095) RGD PMID:21135095 NCBI chr 1:225,067,953...225,071,944
Ensembl chr 1:225,068,009...225,071,945
JBrowse link
G Usp25 ubiquitin specific peptidase 25 ISO (PMID:22590560) RGD PMID:22590560 NCBI chr11:15,436,080...15,558,646
Ensembl chr11:15,436,269...15,558,646
JBrowse link
negative regulation of low-density lipoprotein particle receptor catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa2 annexin A2 ISO (PMID:22848640)
(MGI:MGI:5446858|PMID:22848640)
RGD PMID:22848640 MGI:MGI:5446858 NCBI chr 8:75,687,134...75,723,589
Ensembl chr 8:75,687,100...75,723,594
JBrowse link
G Furin furin (paired basic amino acid cleaving enzyme) ISO
IEA
(PMID:16912035)
GO_REF:0000107
RGD
Ensembl
PMID:16912035 GO_REF:0000107 NCBI chr 1:142,185,092...142,198,167
Ensembl chr 1:142,185,094...142,197,182
JBrowse link
negative regulation of lysosomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Laptm4b lysosomal protein transmembrane 4 beta ISO
ISS
(PMID:25588945)
GO_REF:0000024
RGD
UniProt
PMID:25588945 GO_REF:0000024 NCBI chr 7:72,924,911...72,968,099
Ensembl chr 7:72,924,799...72,968,101
JBrowse link
G Mgat3 beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase ISO
ISS
MGI:MGI:1857830 (MGI:MGI:5751042|PMID:25592972), (MGI:MGI:5816436|PMID:26467158)
GO_REF:0000024
RGD
UniProt
PMID:25592972, PMID:26467158 GO_REF:0000024, MGI:MGI:5751042, MGI:MGI:5816436 NCBI chr 7:121,394,541...121,436,935
Ensembl chr 7:121,408,829...121,435,022
JBrowse link
G Vps35 VPS35 retromer complex component ISO (MGI:MGI:5694519|PMID:26203154) RGD PMID:26203154 MGI:MGI:5694519 NCBI chr19:27,464,937...27,500,636
Ensembl chr19:27,464,937...27,500,636
JBrowse link
negative regulation of miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent2 terminal nucleotidyltransferase 2 ISS
ISO
GO_REF:0000024
(PMID:23200856)
UniProt
RGD
PMID:23200856 GO_REF:0000024 NCBI chr 2:22,746,290...22,798,252
Ensembl chr 2:22,747,547...22,798,214
JBrowse link
negative regulation of mitochondrial RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrpprc leucine-rich pentatricopeptide repeat containing ISO MGI:MGI:1916394|MGI:MGI:3857306|MGI:MGI:5438913 (MGI:MGI:5301479|PMID:21880015), (MGI:MGI:5438202|PMID:22045337) RGD PMID:21880015, PMID:22045337 MGI:MGI:5301479, MGI:MGI:5438202 NCBI chr 6:7,984,043...8,066,874
Ensembl chr 6:7,984,019...8,066,868
JBrowse link
G Slirp SRA stem-loop interacting RNA binding protein ISO
IBA
MGI:MGI:1919666 (MGI:MGI:5438202|PMID:22045337)
PMID:21873635
RGD PMID:22045337, PMID:21873635 MGI:MGI:5438202, RGD:13792537 NCBI chr 6:111,476,768...111,486,039
Ensembl chr 6:111,476,768...111,486,039
JBrowse link
negative regulation of mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fmr1 FMRP translational regulator 1 IEA
ISO
GO_REF:0000107
(PMID:25225333)
Ensembl
RGD
PMID:25225333 GO_REF:0000107 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Pkp1 plakophilin 1 ISO (PMID:25225333) RGD PMID:25225333 NCBI chr13:52,705,174...52,753,089
Ensembl chr13:52,705,174...52,752,997
JBrowse link
G Pkp3 plakophilin 3 ISO (PMID:25225333) RGD PMID:25225333 NCBI chr 1:213,884,795...213,897,783
Ensembl chr 1:213,886,775...213,897,783
JBrowse link
negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx34 DExH-box helicase 34 ISO (PMID:23828042) RGD PMID:23828042 NCBI chr 1:78,069,260...78,112,488
Ensembl chr 1:78,090,044...78,112,488
JBrowse link
G Nbas NBAS subunit of NRZ tethering complex ISO (PMID:23828042) RGD PMID:23828042 NCBI chr 6:38,474,773...38,777,146
Ensembl chr 6:38,474,804...38,777,806
JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 ISO
ISS
(PMID:18447585)
GO_REF:0000024
RGD
UniProt
PMID:18447585 GO_REF:0000024 NCBI chr 7:75,409,581...75,421,874
Ensembl chr 7:75,409,581...75,422,268
JBrowse link
G Secisbp2 SECIS binding protein 2 ISO
IEA
MGI:MGI:4433050 (MGI:MGI:5582859|PMID:24274065)
GO_REF:0000107
RGD
Ensembl
PMID:24274065 GO_REF:0000107, MGI:MGI:5582859 NCBI chr17:13,555,348...13,586,595
Ensembl chr17:13,555,349...13,586,554
JBrowse link
negative regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent4a terminal nucleotidyltransferase 4A ISO (PMID:30026317) RGD PMID:30026317 NCBI chr 1:36,400,056...36,433,238
Ensembl chr 1:36,400,443...36,433,238
JBrowse link
G Tent4b terminal nucleotidyltransferase 4B ISO (PMID:30026317) RGD PMID:30026317 NCBI chr19:19,771,289...19,834,759
Ensembl chr19:19,771,677...19,832,812
JBrowse link
G Tob1 transducer of ErbB-2.1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:18377426)
Ensembl
UniProt
RGD
PMID:18377426 GO_REF:0000024, GO_REF:0000107 NCBI chr10:81,913,689...81,915,727
Ensembl chr10:81,913,689...81,915,716
JBrowse link
negative regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase ISO (PMID:8175643) RGD PMID:8175643 NCBI chr 5:78,368,867...78,379,206
Ensembl chr 5:78,368,867...78,379,346
JBrowse link
G F8a1 coagulation factor VIII-associated 1 ISO
ISS
(PMID:27815841)
GO_REF:0000024
RGD
UniProt
PMID:27815841 GO_REF:0000024 NCBI chr 1:147,021,436...147,022,950
Ensembl chr 1:147,021,436...147,022,950
JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 ISO (PMID:21669198) RGD PMID:21669198 NCBI chr19:44,164,935...44,175,771
Ensembl chr19:44,164,935...44,175,770
JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 IMP
ISO
PMID:17517623
(MGI:MGI:6148636|PMID:17517623)
RGD PMID:17517623, PMID:17517623 MGI:MGI:6148636, RGD:13514081 NCBI chr 9:17,817,791...17,823,163
Ensembl chr 9:17,817,721...17,823,243
JBrowse link
G Lamp3 lysosomal-associated membrane protein 3 ISO (PMID:25681212) RGD PMID:25681212 NCBI chr11:84,930,965...85,000,694
Ensembl chr11:84,972,132...85,000,681
JBrowse link
G Marchf7 membrane associated ring-CH-type finger 7 ISO
ISS
(PMID:29295817)
GO_REF:0000024
RGD
UniProt
PMID:29295817 GO_REF:0000024 NCBI chr 3:46,284,961...46,325,230
Ensembl chr 3:46,286,712...46,324,057
JBrowse link
G Ophn1 oligophrenin 1 ISO
IBA
(MGI:MGI:5303043|PMID:21874017)
PMID:21873635
RGD PMID:21874017, PMID:21873635 MGI:MGI:5303043, RGD:13792537 NCBI chr  X:68,185,865...68,579,518
Ensembl chr  X:68,189,161...68,563,137
JBrowse link
G Prkcg protein kinase C, gamma ISO
ISS
(MGI:MGI:5467682|PMID:23185022)
GO_REF:0000024
RGD
UniProt
PMID:23185022 GO_REF:0000024, MGI:MGI:5467682 NCBI chr 1:64,407,098...64,433,698
Ensembl chr 1:64,407,114...64,433,636
JBrowse link
G Psme3ip1 proteasome activator subunit 3 interacting protein 1 ISO (PMID:29934401) RGD PMID:29934401 NCBI chr19:10,827,057...10,856,747
Ensembl chr19:10,827,371...10,856,745
JBrowse link
G Psmf1 proteasome inhibitor subunit 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:10764772)
Ensembl
UniProt
RGD
PMID:10764772 GO_REF:0000024, GO_REF:0000107 NCBI chr 3:147,238,111...147,263,275
Ensembl chr 3:147,238,114...147,263,275
JBrowse link
G Sco1 synthesis of cytochrome C oxidase 1 ISO MGI:MGI:2176228|MGI:MGI:5758867 (MGI:MGI:5643882|PMID:25683716) RGD PMID:25683716 MGI:MGI:5643882 NCBI chr10:53,595,854...53,608,437
Ensembl chr10:53,595,854...53,608,435
JBrowse link
G Usp19 ubiquitin specific peptidase 19 ISO
IEA
(MGI:MGI:5614537|PMID:25088257)
GO_REF:0000107
RGD
Ensembl
PMID:25088257 GO_REF:0000107, MGI:MGI:5614537 NCBI chr 8:117,280,690...117,291,729
Ensembl chr 8:117,280,705...117,291,351
JBrowse link
negative regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag5 BAG cochaperone 5 ISO (PMID:24475098) RGD PMID:24475098 NCBI chr 6:136,180,640...136,185,651
Ensembl chr 6:136,182,006...136,185,651
JBrowse link
G Bag6 BAG cochaperone 6 ISO
ISS
(MGI:MGI:3808636|PMID:18678708)
GO_REF:0000024
RGD
UniProt
PMID:18678708 GO_REF:0000024, MGI:MGI:3808636 NCBI chr20:5,124,512...5,138,084
Ensembl chr20:5,125,349...5,138,084
JBrowse link
G Camlg calcium modulating ligand ISO UniProtKB:Q9H9V4 (PMID:20553626) RGD PMID:20553626 NCBI chr17:9,523,792...9,534,683
Ensembl chr17:9,523,795...9,534,653
JBrowse link
G Ccar2 cell cycle and apoptosis regulator 2 ISO (PMID:23398316) RGD PMID:23398316 NCBI chr15:51,818,887...51,834,443
Ensembl chr15:51,818,897...51,834,030
JBrowse link
G Clec16a C-type lectin domain containing 16A ISO MGI:MGI:5648633 (MGI:MGI:5603233|PMID:24949970) RGD PMID:24949970 MGI:MGI:5603233 NCBI chr10:5,002,196...5,196,914
Ensembl chr10:5,009,826...5,196,892
JBrowse link
G Ddrgk1 DDRGK domain containing 1 ISO (PMID:28263186) RGD PMID:28263186 NCBI chr 3:123,195,580...123,206,828
Ensembl chr 3:123,195,580...123,206,828
JBrowse link
G Fhit fragile histidine triad diadenosine triphosphatase ISO
IBA
ISS
(PMID:15313915)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:15313915, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr15:15,697,292...16,862,873 JBrowse link
G Gipc1 GIPC PDZ domain containing family, member 1 ISO (MGI:MGI:3807767|PMID:11546783) RGD PMID:11546783 MGI:MGI:3807767 NCBI chr19:24,786,604...24,798,231
Ensembl chr19:24,786,628...24,798,233
JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 ISS
ISO
GO_REF:0000024
(PMID:16280321), (PMID:24613385)
UniProt
RGD
PMID:16280321, PMID:24613385 GO_REF:0000024 NCBI chr 9:17,817,791...17,823,163
Ensembl chr 9:17,817,721...17,823,243
JBrowse link
G Klhl40 kelch-like family member 40 ISO
IBA
(MGI:MGI:5586592|PMID:24960163)
PMID:21873635
RGD PMID:24960163, PMID:21873635 MGI:MGI:5586592, RGD:13792537 NCBI chr 8:130,416,265...130,421,871
Ensembl chr 8:130,416,355...130,421,871
JBrowse link
G Map1a microtubule-associated protein 1A ISO (MGI:MGI:5703671|PMID:26609151) RGD PMID:26609151 MGI:MGI:5703671 NCBI chr 3:113,251,918...113,272,193
Ensembl chr 3:113,251,778...113,272,186
JBrowse link
G Mtm1 myotubularin 1 ISO MGI:MGI:2450997 (MGI:MGI:5510937|PMID:23695157) RGD PMID:23695157 MGI:MGI:5510937 NCBI chr 6:18,821,821...18,840,449
Ensembl chr 6:18,821,815...18,839,409
JBrowse link
G N4bp1 Nedd4 binding protein 1 ISO
IBA
(MGI:MGI:3829128|PMID:17592138)
PMID:21873635
RGD PMID:17592138, PMID:21873635 MGI:MGI:3829128, RGD:13792537 NCBI chr19:21,218,123...21,268,539
Ensembl chr19:21,218,465...21,266,964
JBrowse link
G Nop53 NOP53 ribosome biogenesis factor ISO (PMID:22522597) RGD PMID:22522597 NCBI chr 1:77,836,522...77,843,991
Ensembl chr 1:77,836,196...77,844,189
JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase IEA
ISO
GO_REF:0000107
(PMID:26678539)
Ensembl
RGD
PMID:26678539 GO_REF:0000107 NCBI chr  X:71,540,870...71,585,906
Ensembl chr  X:71,528,988...71,585,908
JBrowse link
G Park7 Parkinsonism associated deglycase ISO
IEA
(PMID:17015834)
GO_REF:0000107
RGD
Ensembl
PMID:17015834 GO_REF:0000107 NCBI chr 5:167,982,438...168,004,724
Ensembl chr 5:167,982,439...168,004,724
JBrowse link
G Pbk PDZ binding kinase ISO MGI:MGI:5293435 (MGI:MGI:5293269|PMID:21715333) RGD PMID:21715333 MGI:MGI:5293269 NCBI chr15:42,489,253...42,500,377
Ensembl chr15:42,489,377...42,500,395
JBrowse link
G Rpl11 ribosomal protein L11 ISO
ISS
(MGI:MGI:5897550|PMID:21804542)
GO_REF:0000024
RGD
UniProt
PMID:21804542 GO_REF:0000024, MGI:MGI:5897550 NCBI chr 5:154,390,809...154,394,412
Ensembl chr 5:154,388,140...154,394,328
JBrowse link
G Rybp RING1 and YY1 binding protein ISO (PMID:27060496) RGD PMID:27060496 NCBI chr 4:132,689,623...132,740,823
Ensembl chr 4:132,689,531...132,740,938
JBrowse link
G Sdcbp syndecan binding protein ISO
ISS
(PMID:25893292)
GO_REF:0000024
RGD
UniProt
PMID:25893292 GO_REF:0000024 NCBI chr 5:19,471,664...19,498,499
Ensembl chr 5:19,471,664...19,498,485
JBrowse link
G Senp1 SUMO specific peptidase 1 ISO MGI:MGI:3818522 (MGI:MGI:3818351|PMID:17981124) RGD PMID:17981124 MGI:MGI:3818351 NCBI chr 7:139,626,444...139,684,587
Ensembl chr 7:139,630,515...139,675,245
JBrowse link
G Shh sonic hedgehog signaling molecule ISO
IEA
(MGI:MGI:3624046|PMID:16611981)
GO_REF:0000107
RGD
Ensembl
PMID:16611981 GO_REF:0000107, MGI:MGI:3624046 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 ISO (MGI:MGI:5310666|PMID:22285184) RGD PMID:22285184 MGI:MGI:5310666 NCBI chr 8:118,206,678...118,326,264
Ensembl chr 8:118,206,698...118,325,537
JBrowse link
G Taf9 TATA-box binding protein associated factor 9 ISO (PMID:11278372) RGD PMID:11278372 NCBI chr 2:30,664,407...30,668,414
Ensembl chr 2:30,664,639...30,668,414
JBrowse link
G Tlk2 tousled-like kinase 2 ISO (PMID:20016786) RGD PMID:20016786 NCBI chr10:93,410,181...93,507,277
Ensembl chr10:93,415,399...93,507,277
JBrowse link
G Trim39 tripartite motif-containing 39 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:23213251)
UniProt
RGD
PMID:23213251, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr20:2,500,691...2,514,546
Ensembl chr20:2,500,689...2,514,546
JBrowse link
G Ubxn1 UBX domain protein 1 ISO
ISS
(PMID:20351172)
GO_REF:0000024
RGD
UniProt
PMID:20351172 GO_REF:0000024 NCBI chr 1:225,067,953...225,071,944
Ensembl chr 1:225,068,009...225,071,945
JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 ISO (PMID:23770237) RGD PMID:23770237 NCBI chr13:60,568,102...60,603,812
Ensembl chr13:60,545,635...60,603,811
JBrowse link
G Usp7 ubiquitin specific peptidase 7 IEA
ISO
GO_REF:0000107
(PMID:26678539)
Ensembl
RGD
PMID:26678539 GO_REF:0000107 NCBI chr10:6,930,462...7,019,910
Ensembl chr10:6,975,244...7,018,930
JBrowse link
G Wac WW domain containing adaptor with coiled-coil ISO (PMID:22354037) RGD PMID:22354037 NCBI chr17:60,887,606...60,946,630
Ensembl chr17:60,888,017...60,946,426
JBrowse link
negative regulation of proteolysis involved in cellular protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn2a cyclin-dependent kinase inhibitor 2A ISO (MGI:MGI:5468878|PMID:23277542)
UniProtKB:Q9BXM7 (PMID:25217637)
RGD PMID:23277542, PMID:25217637 MGI:MGI:5468878 NCBI chr 5:107,823,323...107,832,405
Ensembl chr 5:107,823,330...107,841,175
JBrowse link
G Efna1 ephrin A1 ISO UniProtKB:P54764 (PMID:24217950) RGD PMID:24217950 NCBI chr 2:188,588,808...188,596,156
Ensembl chr 2:188,588,796...188,596,222
JBrowse link
G Epha4 Eph receptor A4 ISO UniProtKB:P20827 (PMID:24217950) RGD PMID:24217950 NCBI chr 9:83,111,222...83,253,486
Ensembl chr 9:83,111,222...83,253,458
JBrowse link
negative regulation of retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Derl2 derlin 2 ISO (PMID:25660456) RGD PMID:25660456 NCBI chr10:57,641,682...57,653,554
Ensembl chr10:57,644,207...57,653,359
JBrowse link
G Derl3 derlin 3 ISO (PMID:25660456) RGD PMID:25660456 NCBI chr20:13,692,102...13,707,645
Ensembl chr20:13,704,314...13,706,205
JBrowse link
G Erlec1 endoplasmic reticulum lectin 1 ISO (PMID:25660456) RGD PMID:25660456 NCBI chr14:115,314,890...115,352,871
Ensembl chr14:115,314,890...115,352,562
JBrowse link
G Os9 OS9, endoplasmic reticulum lectin ISO (PMID:25660456) RGD PMID:25660456 NCBI chr 7:70,378,625...70,407,135
Ensembl chr 7:70,380,311...70,407,177
JBrowse link
G Svip small VCP interacting protein ISO
IBA
(PMID:25660456)
PMID:21873635
RGD PMID:25660456, PMID:21873635 RGD:13792537 NCBI chr 1:107,368,117...107,373,807
Ensembl chr 1:107,368,117...107,373,807
JBrowse link
G Ubac2 UBA domain containing 2 ISO (PMID:25660456) RGD PMID:25660456 NCBI chr15:108,286,407...108,433,531
Ensembl chr15:108,286,453...108,433,529
JBrowse link
G Ube2g2 ubiquitin-conjugating enzyme E2G 2 ISO (PMID:25660456) RGD PMID:25660456 NCBI chr20:11,700,089...11,721,823
Ensembl chr20:11,700,089...11,721,838
JBrowse link
G Ube2j1 ubiquitin-conjugating enzyme E2, J1 ISO (PMID:25660456) RGD PMID:25660456 NCBI chr 5:48,274,387...48,292,699
Ensembl chr 5:48,274,477...48,290,658
JBrowse link
G Yod1 YOD1 deubiquitinase ISO (PMID:24068323) RGD PMID:24068323 NCBI chr13:47,441,296...47,443,013
Ensembl chr13:47,440,803...47,443,188
JBrowse link
negative regulation of RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrde2 NRDE-2, necessary for RNA interference, domain containing ISO (PMID:30842217) RGD PMID:30842217 NCBI chr 6:124,136,949...124,177,426
Ensembl chr 6:124,142,395...124,177,404
JBrowse link
negative regulation of SCF-dependent proteasomal ubiquitin-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Styx serine/threonine/tyrosine interacting protein ISO
IBA
(PMID:28007894)
PMID:21873635
RGD PMID:28007894, PMID:21873635 RGD:13792537 NCBI chr15:19,690,079...19,720,683
Ensembl chr15:19,690,194...19,717,774
JBrowse link
negative regulation of ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anks1a ankyrin repeat and sterile alpha motif domain containing 1A ISO (MGI:MGI:4461099|PMID:20100865) RGD PMID:20100865 MGI:MGI:4461099 NCBI chr20:7,484,550...7,636,498
Ensembl chr20:7,484,550...7,636,497
JBrowse link
G Cdkn2a cyclin-dependent kinase inhibitor 2A ISO (MGI:MGI:5468878|PMID:23277542)
(PMID:16173922), (PMID:18560357)
RGD PMID:16173922, PMID:18560357, PMID:23277542 MGI:MGI:5468878 NCBI chr 5:107,823,323...107,832,405
Ensembl chr 5:107,823,330...107,841,175
JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 ISO UniProtKB:P19784|UniProtKB:P25686|UniProtKB:P67870 (PMID:28031292) RGD PMID:28031292 NCBI chr 3:147,713,808...147,760,375
Ensembl chr 3:147,713,821...147,757,862
JBrowse link
G Csnk2a2 casein kinase 2 alpha 2 ISO UniProtKB:P25686|UniProtKB:P67870|UniProtKB:P68400 (PMID:28031292) RGD PMID:28031292 NCBI chr19:9,972,537...10,012,043
Ensembl chr19:9,972,537...10,012,043
JBrowse link
G Hfe homeostatic iron regulator ISO (PMID:24904118) RGD PMID:24904118 NCBI chr17:43,661,276...43,669,327
Ensembl chr17:43,661,222...43,669,985
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (PMID:21628596) RGD PMID:21628596 NCBI chr 4:66,438,390...66,625,183
Ensembl chr 4:66,445,266...66,624,912
JBrowse link
G Pdcl3 phosducin-like 3 ISO (PMID:23792958) RGD PMID:23792958 NCBI chr 9:45,672,257...45,680,728
Ensembl chr 9:45,672,157...45,680,799
JBrowse link
G Pml PML nuclear body scaffold ISO (PMID:15195100) RGD PMID:15195100 NCBI chr 8:63,002,515...63,034,310
Ensembl chr 8:63,004,870...63,034,226
JBrowse link
G Psen1 presenilin 1 ISO (MGI:MGI:4887523|PMID:20208556) RGD PMID:20208556 MGI:MGI:4887523 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
JBrowse link
G Psen2 presenilin 2 ISO (MGI:MGI:4887523|PMID:20208556) RGD PMID:20208556 MGI:MGI:4887523 NCBI chr13:98,513,600...98,539,347
Ensembl chr13:98,513,570...98,530,724
JBrowse link
G Qrich2 glutamine rich 2 ISO
IEA
(PMID:30683861)
(MGI:MGI:6277293|PMID:30683861)
GO_REF:0000107
RGD
Ensembl
PMID:30683861 GO_REF:0000107, MGI:MGI:6277293 NCBI chr10:105,397,470...105,422,811
Ensembl chr10:105,399,814...105,412,627
JBrowse link
G Rpl23 ribosomal protein L23 ISO (PMID:15314173) RGD PMID:15314173 NCBI chr10:85,721,398...85,725,359
Ensembl chr10:85,721,394...85,725,429
JBrowse link
G Rpl5 ribosomal protein L5 ISO (PMID:18560357) RGD PMID:18560357 NCBI chr14:2,860,963...2,867,397
Ensembl chr14:2,860,965...2,867,397
JBrowse link
G Rps7 ribosomal protein S7 ISO (PMID:17310983) RGD PMID:17310983 NCBI chr 6:47,899,525...47,904,389
Ensembl chr 6:47,899,525...47,904,437
JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat containing alpha ISO
ISS
(PMID:23129660)
GO_REF:0000024
RGD
UniProt
PMID:23129660 GO_REF:0000024 NCBI chr 7:11,521,949...11,538,691
Ensembl chr 7:11,521,998...11,539,319
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling ISO MGI:MGI:1343085 (MGI:MGI:4355593|PMID:19684112) RGD PMID:19684112 MGI:MGI:4355593 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 ISO (PMID:17237821) RGD PMID:17237821 NCBI chr  X:71,412,291...71,486,456
Ensembl chr  X:71,412,289...71,485,085
JBrowse link
G Trim39 tripartite motif-containing 39 ISO (PMID:19100260) RGD PMID:19100260 NCBI chr20:2,500,691...2,514,546
Ensembl chr20:2,500,689...2,514,546
JBrowse link
G Wnt1 Wnt family member 1 ISO (MGI:MGI:3628833|PMID:16601693) RGD PMID:16601693 MGI:MGI:3628833 NCBI chr 7:140,464,999...140,469,046
Ensembl chr 7:140,464,999...140,469,046
JBrowse link
nonfunctional rRNA decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pelo pelota mRNA surveillance and ribosome rescue factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:47,266,758...47,268,526
Ensembl chr 2:47,266,738...47,268,625
JBrowse link
nuclear histone mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssb small RNA binding exonuclease protection factor La ISO (PMID:9154801) RGD PMID:9154801 NCBI chr 3:56,092,425...56,102,008
Ensembl chr 3:56,092,501...56,102,001
JBrowse link
nuclear mRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dxo decapping exoribonuclease ISO
ISS
(MGI:MGI:5488528|PMID:23523372)
GO_REF:0000024
RGD
UniProt
PMID:23523372 GO_REF:0000024, MGI:MGI:5488528 NCBI chr20:4,517,307...4,519,391
Ensembl chr20:4,517,307...4,519,389
JBrowse link
G Exosc10 exosome component 10 ISO (PMID:17545563) RGD PMID:17545563 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
G Exosc4 exosome component 4 ISO
IBA
(PMID:17545563)
PMID:21873635
RGD PMID:17545563, PMID:21873635 RGD:13792537 NCBI chr 7:117,390,302...117,393,044
Ensembl chr 7:117,390,285...117,393,719
JBrowse link
G Exosc5 exosome component 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:82,452,104...82,461,607
Ensembl chr 1:82,452,469...82,461,606
JBrowse link
G Exosc6 exosome component 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:43,190,879...43,193,164
Ensembl chr19:43,191,390...43,192,208
JBrowse link
G Exosc7 exosome component 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:132,204,628...132,229,968
Ensembl chr 8:132,204,604...132,229,969
JBrowse link
G Exosc8 exosome component 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:143,925,643...143,932,240
Ensembl chr 2:143,925,546...143,931,940
JBrowse link
G Exosc9 exosome component 9 ISO
IBA
(PMID:17545563)
PMID:21873635
RGD PMID:17545563, PMID:21873635 RGD:13792537 NCBI chr 2:123,264,679...123,275,623
Ensembl chr 2:123,264,694...123,294,880
JBrowse link
G Xrn1 5'-3' exoribonuclease 1 ISO (PMID:17545563) RGD PMID:17545563 NCBI chr 8:103,774,125...103,883,563
Ensembl chr 8:103,774,358...103,878,899
JBrowse link
nuclear polyadenylation-dependent antisense transcript catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
nuclear polyadenylation-dependent CUT catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
nuclear polyadenylation-dependent mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc7 exosome component 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:132,204,628...132,229,968
Ensembl chr 8:132,204,604...132,229,969
JBrowse link
G Exosc8 exosome component 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:143,925,643...143,932,240
Ensembl chr 2:143,925,546...143,931,940
JBrowse link
G Exosc9 exosome component 9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:123,264,679...123,275,623
Ensembl chr 2:123,264,694...123,294,880
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 ISO (PMID:16934922) RGD PMID:16934922 NCBI chr14:113,530,470...113,561,645
Ensembl chr14:113,530,470...113,561,645
JBrowse link
nuclear polyadenylation-dependent rRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 ISO
IBA
(PMID:16455498)
PMID:21873635
RGD PMID:16455498, PMID:21873635 RGD:13792537 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
G Exosc2 exosome component 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:10,151,734...10,161,997
Ensembl chr 3:10,151,284...10,161,989
JBrowse link
G Exosc3 exosome component 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,866,498...60,871,734
Ensembl chr 5:60,868,502...60,871,705
JBrowse link
G Exosc7 exosome component 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:132,204,628...132,229,968
Ensembl chr 8:132,204,604...132,229,969
JBrowse link
G Exosc8 exosome component 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:143,925,643...143,932,240
Ensembl chr 2:143,925,546...143,931,940
JBrowse link
G Exosc9 exosome component 9 ISO
IBA
(PMID:16455498)
PMID:21873635
RGD PMID:16455498, PMID:21873635 RGD:13792537 NCBI chr 2:123,264,679...123,275,623
Ensembl chr 2:123,264,694...123,294,880
JBrowse link
nuclear polyadenylation-dependent snoRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
nuclear polyadenylation-dependent snRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
nuclear polyadenylation-dependent tRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
G Exosc2 exosome component 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:10,151,734...10,161,997
Ensembl chr 3:10,151,284...10,161,989
JBrowse link
G Exosc3 exosome component 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,866,498...60,871,734
Ensembl chr 5:60,868,502...60,871,705
JBrowse link
G Exosc7 exosome component 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:132,204,628...132,229,968
Ensembl chr 8:132,204,604...132,229,969
JBrowse link
G Exosc8 exosome component 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:143,925,643...143,932,240
Ensembl chr 2:143,925,546...143,931,940
JBrowse link
G Exosc9 exosome component 9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:123,264,679...123,275,623
Ensembl chr 2:123,264,694...123,294,880
JBrowse link
nuclear protein quality control by the ubiquitin-proteasome system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankzf1 ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:82,393,619...82,400,537
Ensembl chr 9:82,393,672...82,400,530
JBrowse link
G Cul3 cullin 3 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:27561354)
Ensembl
UniProt
RGD
PMID:27561354 GO_REF:0000024, GO_REF:0000107 NCBI chr 9:86,044,485...86,129,066
Ensembl chr 9:86,044,485...86,129,329
JBrowse link
G Klhl15 kelch-like family member 15 ISO
ISS
(PMID:27561354)
GO_REF:0000024
RGD
UniProt
PMID:27561354 GO_REF:0000024 NCBI chr  X:63,342,277...63,390,915
Ensembl chr  X:63,343,546...63,389,989
JBrowse link
nuclear retention of pre-mRNA at the site of transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcid2 PCI domain containing 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:81,757,582...81,783,047
Ensembl chr16:81,756,971...81,783,047
JBrowse link
nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc2 exosome component 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:10,151,734...10,161,997
Ensembl chr 3:10,151,284...10,161,989
JBrowse link
G Exosc3 exosome component 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,866,498...60,871,734
Ensembl chr 5:60,868,502...60,871,705
JBrowse link
nuclear retention of unspliced pre-mRNA at the site of transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 ISO
IBA
(PMID:20699273)
PMID:21873635
RGD PMID:20699273, PMID:21873635 RGD:13792537 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
G Prpf18 pre-mRNA processing factor 18 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:77,601,914...77,632,507
Ensembl chr17:77,601,877...77,663,980
JBrowse link
nuclear-transcribed mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ddx5 DEAD-box helicase 5 ISO (PMID:23788676) RGD PMID:23788676 NCBI chr10:94,979,759...94,988,461
Ensembl chr10:94,980,928...94,988,461
JBrowse link
G Dhx34 DExH-box helicase 34 ISO (PMID:23828042) RGD PMID:23828042 NCBI chr 1:78,069,260...78,112,488
Ensembl chr 1:78,090,044...78,112,488
JBrowse link
G Dxo decapping exoribonuclease IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,517,307...4,519,391
Ensembl chr20:4,517,307...4,519,389
JBrowse link
G Exosc10 exosome component 10 ISO (PMID:17545563) RGD PMID:17545563 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
G Exosc4 exosome component 4 ISO (PMID:17545563) RGD PMID:17545563 NCBI chr 7:117,390,302...117,393,044
Ensembl chr 7:117,390,285...117,393,719
JBrowse link
G Exosc9 exosome component 9 ISO (PMID:17545563) RGD PMID:17545563 NCBI chr 2:123,264,679...123,275,623
Ensembl chr 2:123,264,694...123,294,880
JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:123,162,086...123,168,330
Ensembl chr 4:123,162,086...123,168,330
JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr16:20,506,399...20,511,818
Ensembl chr16:20,506,399...20,511,818
JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:11,724,932...11,732,020
Ensembl chr 7:11,724,962...11,727,388
JBrowse link
G Mrto4 MRT4 homolog, ribosome maturation factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:157,814,142...157,820,889
Ensembl chr 5:157,815,361...157,820,889
JBrowse link
G Nbas NBAS subunit of NRZ tethering complex ISO (PMID:23828042) RGD PMID:23828042 NCBI chr 6:38,474,773...38,777,146
Ensembl chr 6:38,474,804...38,777,806
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 IMP RGD PMID:15039777 RGD:10045958 NCBI chr 7:12,663,965...12,673,723
Ensembl chr 7:12,663,965...12,673,718
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 ISO (MGI:MGI:4819285|PMID:20639877)
(PMID:25026078)
RGD PMID:20639877, PMID:25026078 MGI:MGI:4819285 NCBI chr13:78,723,028...78,794,663
Ensembl chr13:78,722,763...78,789,266
JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 ISO
ISS
(PMID:20123736)
GO_REF:0000024
RGD
UniProt
PMID:20123736 GO_REF:0000024 NCBI chr 5:144,178,248...144,221,318
Ensembl chr 5:144,179,023...144,221,263
JBrowse link
G Upf1 UPF1, RNA helicase and ATPase ISO (PMID:23828042) RGD PMID:23828042 NCBI chr16:20,824,888...20,845,632
Ensembl chr16:20,824,864...20,845,243
JBrowse link
G Xrn1 5'-3' exoribonuclease 1 ISO
IBA
(PMID:17545563)
PMID:21873635
RGD PMID:17545563, PMID:21873635 RGD:13792537 NCBI chr 8:103,774,125...103,883,563
Ensembl chr 8:103,774,358...103,878,899
JBrowse link
G Xrn2 5'-3' exoribonuclease 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:141,224,858...141,298,272
Ensembl chr 3:141,225,290...141,298,265
JBrowse link
nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Skiv2l Ski2 like RNA helicase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,519,457...4,530,177
Ensembl chr20:4,519,474...4,530,126
JBrowse link
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot1 CCR4-NOT transcription complex, subunit 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:9,668,186...9,761,605
Ensembl chr19:9,668,186...9,761,605
JBrowse link
G Cnot6l CCR4-NOT transcription complex, subunit 6-like ISO (MGI:MGI:3828348|PMID:17452450) RGD PMID:17452450 MGI:MGI:3828348 NCBI chr14:15,059,101...15,148,255
Ensembl chr14:15,059,387...15,146,586
JBrowse link
G Pde12 phosphodiesterase 12 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:21245038)
Ensembl
RGD
PMID:21245038, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr16:2,357,028...2,367,069
Ensembl chr16:2,357,028...2,367,253
JBrowse link
G Polr2d RNA polymerase II subunit D IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:24,570,762...24,577,894
Ensembl chr18:24,570,762...24,577,894
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 ISO (MGI:MGI:5706859|PMID:26000482), (MGI:MGI:5751631|PMID:26255671) RGD PMID:26000482, PMID:26255671 MGI:MGI:5706859, MGI:MGI:5751631 NCBI chr13:78,723,028...78,794,663
Ensembl chr13:78,722,763...78,789,266
JBrowse link
G Rc3h2 ring finger and CCCH-type domains 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:21,621,976...21,676,789
Ensembl chr 3:21,623,041...21,670,014
JBrowse link
G Zfp36 zinc finger protein 36 ISO (MGI:MGI:3589099|PMID:15814898)
(PMID:23644599)
RGD PMID:15814898, PMID:23644599 MGI:MGI:3589099 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 ISO (MGI:MGI:3589099|PMID:15814898) RGD PMID:15814898 MGI:MGI:3589099 NCBI chr 6:103,308,032...103,313,074
Ensembl chr 6:103,308,045...103,313,074
JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 ISO (MGI:MGI:3589099|PMID:15814898) RGD PMID:15814898 MGI:MGI:3589099 NCBI chr 6:7,417,416...7,423,447
Ensembl chr 6:7,417,425...7,421,456
JBrowse link
nuclear-transcribed mRNA catabolic process, deadenylation-independent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp36 zinc finger protein 36 ISO
ISS
(PMID:11279239)
GO_REF:0000024
RGD
UniProt
PMID:11279239 GO_REF:0000024 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 IDA PMID:11279239 UniProt PMID:11279239 RGD:11344953 NCBI chr 6:103,308,032...103,313,074
Ensembl chr 6:103,308,045...103,313,074
JBrowse link
nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upf1 UPF1, RNA helicase and ATPase ISO (PMID:26255671) RGD PMID:26255671 NCBI chr16:20,824,888...20,845,632
Ensembl chr16:20,824,864...20,845,243
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A ISO
IBA
(MGI:MGI:5751631|PMID:26255671)
PMID:21873635
RGD PMID:26255671, PMID:21873635 MGI:MGI:5751631, RGD:13792537 NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165
JBrowse link
nuclear-transcribed mRNA catabolic process, exonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 ISO (PMID:23756462) RGD PMID:23756462 NCBI chr 9:93,767,837...94,161,106
Ensembl chr 9:93,660,680...94,160,760
JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D TAS RGD PMID:15192077 RGD:1357938 NCBI chr14:11,256,163...11,274,684
Ensembl chr14:11,256,268...11,274,578
JBrowse link
G Polr2g RNA polymerase II subunit G IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:224,991,250...224,998,355
Ensembl chr 1:224,991,222...224,994,653
JBrowse link
nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:93,767,837...94,161,106
Ensembl chr 9:93,660,680...94,160,760
JBrowse link
G Exosc2 exosome component 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:10,151,734...10,161,997
Ensembl chr 3:10,151,284...10,161,989
JBrowse link
G Exosc3 exosome component 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,866,498...60,871,734
Ensembl chr 5:60,868,502...60,871,705
JBrowse link
G Exosc4 exosome component 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:117,390,302...117,393,044
Ensembl chr 7:117,390,285...117,393,719
JBrowse link
G Exosc5 exosome component 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:82,452,104...82,461,607
Ensembl chr 1:82,452,469...82,461,606
JBrowse link
G Exosc6 exosome component 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:43,190,879...43,193,164
Ensembl chr19:43,191,390...43,192,208
JBrowse link
G Exosc7 exosome component 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:132,204,628...132,229,968
Ensembl chr 8:132,204,604...132,229,969
JBrowse link
G Exosc8 exosome component 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:143,925,643...143,932,240
Ensembl chr 2:143,925,546...143,931,940
JBrowse link
G Exosc9 exosome component 9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:123,264,679...123,275,623
Ensembl chr 2:123,264,694...123,294,880
JBrowse link
nuclear-transcribed mRNA catabolic process, no-go decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot6 CCR4-NOT transcription complex, subunit 6 ISO
IEA
ISS
(PMID:15314026)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:15314026 GO_REF:0000024, GO_REF:0000107 NCBI chr10:35,144,291...35,195,126
Ensembl chr10:35,146,337...35,187,416
JBrowse link
G Csde1 cold shock domain containing E1 ISO (PMID:15314026) RGD PMID:15314026 NCBI chr 2:205,525,194...205,552,987
Ensembl chr 2:205,525,204...205,552,991
JBrowse link
G Gtpbp2 GTP binding protein 2 ISO (MGI:MGI:5574482|PMID:25061210) RGD PMID:25061210 MGI:MGI:5574482 NCBI chr 9:17,198,957...17,208,456
Ensembl chr 9:17,198,957...17,209,220
JBrowse link
G Pelo pelota mRNA surveillance and ribosome rescue factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:47,266,758...47,268,526
Ensembl chr 2:47,266,738...47,268,625
JBrowse link
nuclear-transcribed mRNA catabolic process, non-stop decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pelo pelota mRNA surveillance and ribosome rescue factor IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:47,266,758...47,268,526
Ensembl chr 2:47,266,738...47,268,625
JBrowse link
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casc3 CASC3 exon junction complex subunit IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:86,724,534...86,744,485
Ensembl chr10:86,724,427...86,745,927