Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:main axon
go back to main search page
Accession:GO:0044304 term browser browse the term
Definition:The main axonal trunk, as opposed to the collaterals; i.e., excluding collaterals, terminal, spines, or dendrites.
Synonyms:exact_synonym: axon trunk
 related_synonym: axon shaft;   axonal shaft
 xref: NIF_Subcellular:sao1596975044


show annotations for term's descendants       view all columns           Sort by:
 
main axon term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apbb1 amyloid beta precursor protein binding family B member 1 JBrowse link 1 170,387,625 170,411,263 RGD:10053998
G App amyloid beta precursor protein JBrowse link 11 24,425,013 24,641,872 RGD:10053998
G Map2 microtubule-associated protein 2 JBrowse link 9 73,204,753 73,462,965 RGD:13514082
G Mapt microtubule-associated protein tau JBrowse link 10 92,289,002 92,386,517 RGD:10412707
RGD:13514077
G RGD1359108 similar to RIKEN cDNA 3110043O21 JBrowse link 5 50,666,444 50,691,523 RGD:1600115
RGD:1624291
G Tiam1 TIAM Rac1 associated GEF 1 JBrowse link 11 29,931,083 30,061,173 RGD:10043321
G Trim46 tripartite motif-containing 46 JBrowse link 2 188,548,608 188,561,617 RGD:13514087
RGD:1624291
axolemma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ache acetylcholinesterase JBrowse link 12 22,472,358 22,477,052 RGD:1624291
G Adora1 adenosine A1 receptor JBrowse link 13 51,042,111 51,076,913 RGD:1625231
G Adora2a adenosine A2a receptor JBrowse link 20 14,265,251 14,282,873 RGD:1625231
G Ank1 ankyrin 1 JBrowse link 16 73,681,422 73,912,605 RGD:1599113
G Chrna7 cholinergic receptor nicotinic alpha 7 subunit JBrowse link 1 123,897,341 124,039,263 RGD:1624291
RGD:1600115
G Cntnap2 contactin associated protein 2 JBrowse link 4 74,700,539 77,025,463 RGD:1624291
RGD:8554062
G Epb41l3 erythrocyte membrane protein band 4.1-like 3 JBrowse link 9 117,314,935 117,666,408 RGD:1624291
G Gabbr1 gamma-aminobutyric acid type B receptor subunit 1 JBrowse link 20 1,955,344 1,984,907 RGD:2315465
G Kcnc1 potassium voltage-gated channel subfamily C member 1 JBrowse link 1 102,414,352 102,456,718 RGD:1624291
G Kcnc2 potassium voltage-gated channel subfamily C member 2 JBrowse link 7 54,978,453 55,159,362 RGD:9685742
G Kcnc3 potassium voltage-gated channel subfamily C member 3 JBrowse link 1 100,593,453 100,607,874 RGD:1624291
G Kcnh1 potassium voltage-gated channel subfamily H member 1 JBrowse link 13 110,920,712 111,232,291 RGD:9693719
G Kcnj11 potassium inwardly-rectifying channel, subfamily J, member 11 JBrowse link 1 102,103,093 102,107,134 RGD:7296980
G Mapk8ip3 mitogen-activated protein kinase 8 interacting protein 3 JBrowse link 10 14,259,394 14,299,276 RGD:1624291
G Mapt microtubule-associated protein tau JBrowse link 10 92,289,002 92,386,517 RGD:1600115
RGD:1624291
G Myo1d myosin ID JBrowse link 10 67,866,939 68,142,864 RGD:2314421
G Nrg1 neuregulin 1 JBrowse link 16 62,969,573 64,065,063 RGD:1624291
G Robo1 roundabout guidance receptor 1 JBrowse link 11 9,079,291 10,146,302 RGD:1624291
G Robo2 roundabout guidance receptor 2 JBrowse link 11 11,062,866 12,618,793 RGD:1624291
G Slc1a2 solute carrier family 1 member 2 JBrowse link 3 92,518,679 92,665,731 RGD:1624291
G Sptbn1 spectrin, beta, non-erythrocytic 1 JBrowse link 14 114,517,839 114,700,199 RGD:1624291
G Thy1 Thy-1 cell surface antigen JBrowse link 8 48,382,121 48,387,271 RGD:12793046
axon initial segment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ank1 ankyrin 1 JBrowse link 16 73,681,422 73,912,605 RGD:13792537
G Ank3 ankyrin 3 JBrowse link 20 19,948,767 20,480,628 RGD:6767287
RGD:1600115
RGD:1624291
RGD:13800538
RGD:13514087
RGD:8553674
G Bcan brevican JBrowse link 2 187,359,674 187,373,133 RGD:14392774
G Bin1 bridging integrator 1 JBrowse link 18 25,163,575 25,222,139 RGD:8553847
G Camk2d calcium/calmodulin-dependent protein kinase II delta JBrowse link 2 230,900,907 231,132,207 RGD:1624291
G Cck cholecystokinin JBrowse link 8 130,120,525 130,127,515 RGD:1626094
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 JBrowse link 9 43,807,412 43,858,225 RGD:6902905
G Kcnq2 potassium voltage-gated channel subfamily Q member 2 JBrowse link 3 176,585,897 176,645,029 RGD:1624291
RGD:13792537
G Kcnq3 potassium voltage-gated channel subfamily Q member 3 JBrowse link 7 106,714,479 107,009,639 RGD:1624291
RGD:13792537
RGD:1600115
RGD:9686369
G Lrrc7 leucine rich repeat containing 7 JBrowse link 2 264,910,594 265,300,860 RGD:1299511
RGD:13792537
G Map1a microtubule-associated protein 1A JBrowse link 3 113,251,918 113,272,193 RGD:1624291
G Map2 microtubule-associated protein 2 JBrowse link 9 73,204,753 73,462,965 RGD:1600115
RGD:1624291
RGD:13514087
G Nav1 neuron navigator 1 JBrowse link 13 52,260,474 52,515,016 RGD:1624291
RGD:13792537
G Nfasc neurofascin JBrowse link 13 49,335,407 49,522,474 RGD:8553674
RGD:13514087
RGD:12904752
RGD:12793037
RGD:1624291
G Nrcam neuronal cell adhesion molecule JBrowse link 6 64,297,843 64,867,408 RGD:8553674
RGD:14392774
G Scn1a sodium voltage-gated channel alpha subunit 1 JBrowse link 3 52,388,811 52,533,365 RGD:1624291
RGD:1600115
G Scn2a sodium voltage-gated channel alpha subunit 2 JBrowse link 3 51,687,910 51,822,008 RGD:625497
G Scn8a sodium voltage-gated channel alpha subunit 8 JBrowse link 7 142,575,629 142,683,659 RGD:8553674
G Sptbn4 spectrin, beta, non-erythrocytic 4 JBrowse link 1 84,168,494 84,254,679 RGD:8553353
RGD:14392774
RGD:13514087
RGD:1624291
G Trim46 tripartite motif-containing 46 JBrowse link 2 188,548,608 188,561,617 RGD:1624291
internode region of axon term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ermn ermin JBrowse link 3 44,080,350 44,086,006 RGD:1624291
G Mbp myelin basic protein JBrowse link 18 79,326,738 79,437,310 RGD:1624291
RGD:13792537
G Pard3 par-3 family cell polarity regulator JBrowse link 19 60,017,746 60,580,628 RGD:1624291
RGD:1600115
G Tubb4a tubulin, beta 4A class IVa JBrowse link 9 9,961,020 9,968,420 RGD:1624291
juxtaparanode region of axon term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cntn2 contactin 2 JBrowse link 13 49,280,913 49,314,061 RGD:1624291
RGD:1600115
G Cntnap2 contactin associated protein 2 JBrowse link 4 74,700,539 77,025,463 RGD:8554062
RGD:1624291
G Dlg2 discs large MAGUK scaffold protein 2 JBrowse link 1 154,916,274 157,274,077 RGD:8554606
RGD:1600115
RGD:10047376
RGD:1624291
G Dlg4 discs large MAGUK scaffold protein 4 JBrowse link 10 56,625,845 56,655,543 RGD:8554606
RGD:1600115
RGD:10047376
RGD:1624291
G Epb41l3 erythrocyte membrane protein band 4.1-like 3 JBrowse link 9 117,314,935 117,666,408 RGD:1624291
G Kcna1 potassium voltage-gated channel subfamily A member 1 JBrowse link 4 159,190,781 159,192,526 RGD:10047340
RGD:13792537
RGD:1624291
G Kcna2 potassium voltage-gated channel subfamily A member 2 JBrowse link 2 209,838,607 209,852,471 RGD:8554062
RGD:13792537
RGD:1624291
RGD:10047376
G Kcnab1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 JBrowse link 2 155,555,798 156,011,438 RGD:9743934
G Kcnab2 potassium voltage-gated channel subfamily A regulatory beta subunit 2 JBrowse link 5 169,570,327 169,658,875 RGD:10047182
RGD:1624291
RGD:1600115
G Sirt2 sirtuin 2 JBrowse link 1 86,948,866 86,971,954 RGD:8553877
node of Ranvier term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ank3 ankyrin 3 JBrowse link 20 19,948,767 20,480,628 RGD:6767298
RGD:14392774
RGD:1624291
RGD:13514087
G Bcan brevican JBrowse link 2 187,359,674 187,373,133 RGD:14392774
G Bin1 bridging integrator 1 JBrowse link 18 25,163,575 25,222,139 RGD:8553847
G Cdh1 cadherin 1 JBrowse link 19 38,768,467 38,838,395 RGD:1624291
G Cntn2 contactin 2 JBrowse link 13 49,280,913 49,314,061 RGD:1624291
RGD:1600115
G Dag1 dystroglycan 1 JBrowse link 8 116,980,501 116,993,182 RGD:1624291
G Dlg1 discs large MAGUK scaffold protein 1 JBrowse link 11 72,164,566 72,378,895 RGD:1624291
RGD:1600115
G Kcnq2 potassium voltage-gated channel subfamily Q member 2 JBrowse link 3 176,585,897 176,645,029 RGD:1624291
G Kcnq3 potassium voltage-gated channel subfamily Q member 3 JBrowse link 7 106,714,479 107,009,639 RGD:1624291
RGD:1600115
G Myoc myocilin JBrowse link 13 80,517,531 80,527,928 RGD:1600115
RGD:1624291
G Nfasc neurofascin JBrowse link 13 49,335,407 49,522,474 RGD:8553545
RGD:1624291
RGD:14392774
RGD:13825432
G Nrcam neuronal cell adhesion molecule JBrowse link 6 64,297,843 64,867,408 RGD:14392774
G Scn1a sodium voltage-gated channel alpha subunit 1 JBrowse link 3 52,388,811 52,533,365 RGD:1624291
RGD:1600115
G Scn1b sodium voltage-gated channel beta subunit 1 JBrowse link 1 89,550,738 89,560,469 RGD:1624291
RGD:13825432
G Scn2a sodium voltage-gated channel alpha subunit 2 JBrowse link 3 51,687,910 51,822,008 RGD:8553545
G Scn8a sodium voltage-gated channel alpha subunit 8 JBrowse link 7 142,575,629 142,683,659 RGD:1624291
RGD:8553545
G Spock1 sparc/osteonectin, cwcv and kazal like domains proteoglycan 1 JBrowse link 17 7,675,531 7,797,863 RGD:1624291
G Sptbn4 spectrin, beta, non-erythrocytic 4 JBrowse link 1 84,168,494 84,254,679 RGD:8553353
RGD:14392774
RGD:1624291
paranode region of axon term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ank3 ankyrin 3 JBrowse link 20 19,948,767 20,480,628 RGD:1624291
G Cldn5 claudin 5 JBrowse link 11 86,356,292 86,357,718 RGD:634852
G Cntnap1 contactin associated protein 1 JBrowse link 10 89,087,904 89,103,615 RGD:8554062
RGD:1624291
G Cntnap2 contactin associated protein 2 JBrowse link 4 74,700,539 77,025,463 RGD:8554062
G Dlg1 discs large MAGUK scaffold protein 1 JBrowse link 11 72,164,566 72,378,895 RGD:10400858
G Epb41l3 erythrocyte membrane protein band 4.1-like 3 JBrowse link 9 117,314,935 117,666,408 RGD:11252103
RGD:1624291
G Ermn ermin JBrowse link 3 44,080,350 44,086,006 RGD:1624291
G Gjc2 gap junction protein, gamma 2 JBrowse link 10 45,526,740 45,535,520 RGD:13208516
G Kcna1 potassium voltage-gated channel subfamily A member 1 JBrowse link 4 159,190,781 159,192,526 RGD:10047340
RGD:13792537
RGD:1624291
G Kif13b kinesin family member 13B JBrowse link 15 48,030,837 48,192,932 RGD:10400858
G Mag myelin-associated glycoprotein JBrowse link 1 89,345,325 89,360,905 RGD:1624291
G Ncmap noncompact myelin associated protein JBrowse link 5 153,729,250 153,737,161 RGD:8554263
RGD:13792537
RGD:1600115
G Nfasc neurofascin JBrowse link 13 49,335,407 49,522,474 RGD:1624291
G Scn2a sodium voltage-gated channel alpha subunit 2 JBrowse link 3 51,687,910 51,822,008 RGD:1624291
RGD:1600115
G Sirt2 sirtuin 2 JBrowse link 1 86,948,866 86,971,954 RGD:8553877
G Sptan1 spectrin, alpha, non-erythrocytic 1 JBrowse link 3 8,534,437 8,599,259 RGD:1624291
G Sptbn4 spectrin, beta, non-erythrocytic 4 JBrowse link 1 84,168,494 84,254,679 RGD:1624291
varicosity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bin1 bridging integrator 1 JBrowse link 18 25,163,575 25,222,139 RGD:631926
G Cadm1 cell adhesion molecule 1 JBrowse link 8 51,858,906 52,200,591 RGD:1624291
G Cd40 CD40 molecule JBrowse link 3 161,519,789 161,534,943 RGD:11344972
G Crh corticotropin releasing hormone JBrowse link 2 104,459,999 104,461,863 RGD:5508814
G Crhbp corticotropin releasing hormone binding protein JBrowse link 2 25,141,471 25,153,334 RGD:5490549
G Crhr2 corticotropin releasing hormone receptor 2 JBrowse link 4 85,286,371 85,329,374 RGD:5490967
G Dagla diacylglycerol lipase, alpha JBrowse link 1 226,297,013 226,353,712 RGD:1624291
G Dbh dopamine beta-hydroxylase JBrowse link 3 5,709,236 5,731,895 RGD:5129482
G Dnm1 dynamin 1 JBrowse link 3 11,338,081 11,382,043 RGD:8554278
G Map1b microtubule-associated protein 1B JBrowse link 2 29,675,391 29,768,750 RGD:2304025
G Mgll monoglyceride lipase JBrowse link 4 120,671,436 120,773,458 RGD:1624291
G Pnmt phenylethanolamine-N-methyltransferase JBrowse link 10 86,340,893 86,342,501 RGD:5129482
G Tnfrsf1b TNF receptor superfamily member 1B JBrowse link 5 163,136,390 163,167,299 RGD:5130921
G Trpm7 transient receptor potential cation channel, subfamily M, member 7 JBrowse link 3 119,258,189 119,347,084 RGD:5684965
G Ucn urocortin JBrowse link 6 26,602,144 26,602,974 RGD:5508814
G Ucn3 urocortin 3 JBrowse link 17 69,959,879 69,966,532 RGD:70818

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19843
    cellular anatomical entity 19457
      main axon 85
        axolemma 22
        axon initial segment 20
        internode region of axon 4
        juxtaparanode region of axon 10
        node of Ranvier 18
        paranode region of axon 17
        varicosity 16
Path 2
Term Annotations click to browse term
  cellular_component 19843
    cellular anatomical entity 19457
      cell projection 2468
        plasma membrane bounded cell projection 2408
          neuron projection 1632
            axon 831
              main axon 85
                axolemma 22
                axon initial segment 20
                internode region of axon 4
                juxtaparanode region of axon 10
                node of Ranvier 18
                paranode region of axon 17
                varicosity 16
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.