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ONTOLOGY REPORT - ANNOTATIONS


Term:secondary metabolite biosynthetic process
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Accession:GO:0044550 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon.
Synonyms:exact_synonym: secondary metabolite biosynthesis


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hydrogen sulfide biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbs cystathionine beta synthase JBrowse link 20 10,361,987 10,386,663 RGD:8554341
RGD:13792537
RGD:1624291
G Cth cystathionine gamma-lyase JBrowse link 2 264,266,959 264,293,040 RGD:1624291
RGD:1600115
G Mpst mercaptopyruvate sulfurtransferase JBrowse link 7 119,626,636 119,631,317 RGD:1600115
RGD:1624291
melanin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asip agouti signaling protein JBrowse link 3 150,492,010 150,579,870 RGD:1624291
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 JBrowse link X 72,128,996 72,133,692 RGD:1624291
RGD:1600115
G Dct dopachrome tautomerase JBrowse link 15 103,208,174 103,245,033 RGD:1624291
G Ddt D-dopachrome tautomerase JBrowse link 20 13,827,153 13,829,624 RGD:1600115
G Mc1r melanocortin 1 receptor JBrowse link 19 56,215,420 56,219,987 RGD:1624291
G Myo5a myosin VA JBrowse link 8 82,038,966 82,156,507 RGD:1624291
RGD:1600115
G Oca2 OCA2 melanosomal transmembrane protein JBrowse link 1 114,661,970 114,987,433 RGD:1624291
G Pmel premelanosome protein JBrowse link 7 3,133,347 3,143,827 RGD:1624291
G Trpc1 transient receptor potential cation channel, subfamily C, member 1 JBrowse link 8 103,503,982 103,554,905 RGD:1624291
RGD:1600115
G Tyr tyrosinase JBrowse link 1 151,012,598 151,106,802 RGD:1624291
RGD:13792537
melanin biosynthetic process from tyrosine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dct dopachrome tautomerase JBrowse link 15 103,208,174 103,245,033 RGD:1624291
negative regulation of melanin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mfsd12 major facilitator superfamily domain containing 12 JBrowse link 7 11,214,832 11,223,713 RGD:1600115
RGD:1624291
G Rapgef2 Rap guanine nucleotide exchange factor 2 JBrowse link 2 177,836,191 178,057,378 RGD:1624291
RGD:1600115
G Slc24a5 solute carrier family 24 member 5 JBrowse link 3 117,335,212 117,354,480 RGD:1624291
G Wnt5a Wnt family member 5A JBrowse link 16 4,469,451 4,490,271 RGD:1624291
RGD:1600115
positive regulation of hydrogen sulfide biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sp1 Sp1 transcription factor JBrowse link 7 144,014,173 144,044,635 RGD:1624291
positive regulation of melanin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Appl1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 JBrowse link 16 2,560,103 2,602,035 RGD:1624291
G Asip agouti signaling protein JBrowse link 3 150,492,010 150,579,870 RGD:1624291
G Cdh3 cadherin 3 JBrowse link 19 38,668,957 38,719,801 RGD:1624291
G Gipc1 GIPC PDZ domain containing family, member 1 JBrowse link 19 24,786,604 24,798,231 RGD:1600115
RGD:1624291
G Pmel premelanosome protein JBrowse link 7 3,133,347 3,143,827 RGD:1624291
G Tyrp1 tyrosinase-related protein 1 JBrowse link 5 98,387,291 98,406,083 RGD:1624291
regulation of melanin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Slc7a11 solute carrier family 7 member 11 JBrowse link 2 139,453,774 139,528,479 RGD:1624291
siderophore biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bdh2 3-hydroxybutyrate dehydrogenase 2 JBrowse link 2 240,461,505 240,482,149 RGD:1624291
RGD:13792537
RGD:1600115
toxin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 JBrowse link 8 62,451,360 62,458,244 RGD:1624291

Term paths to the root
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Term Annotations click to browse term
  biological_process 19439
    metabolic process 11638
      secondary metabolic process 76
        secondary metabolite biosynthetic process 25
          (+)-kotanin biosynthetic process + 0
          (17Z)-protosta-17(20),24-dien-3beta-ol biosynthetic process 0
          N',N'',N'''-triacetylfusarinine C biosynthetic process + 0
          arugosin biosynthetic process + 0
          asperthecin biosynthetic process + 0
          brevianamide F biosynthetic process + 0
          cichorine biosynthetic process 0
          cordyol C biosynthetic process + 0
          cspyrone B1 biosynthetic process 0
          cyanogenic glycoside biosynthetic process + 0
          dehydroaustinol biosynthetic process + 0
          demethylkotanin biosynthetic process + 0
          diorcinol biosynthetic process + 0
          emericellamide biosynthetic process + 0
          emericellin biosynthetic process + 0
          emodin biosynthetic process + 0
          endocrocin biosynthetic process + 0
          ergot alkaloid biosynthetic process + 0
          gerfelin biosynthetic process + 0
          glycosinolate biosynthetic process + 0
          helvolic acid biosynthetic process + 0
          melanin biosynthetic process + 19
          monodictyphenone biosynthetic process + 0
          negative regulation of secondary metabolite biosynthetic process + 4
          o-orsellinic acid biosynthetic process + 0
          ocellus pigment biosynthetic process + 0
          orcinol biosynthetic process + 0
          orlandin biosynthetic process 0
          penicillin biosynthetic process + 0
          phenylpropanoid biosynthetic process + 0
          pheromone biosynthetic process + 0
          phytochelatin biosynthetic process 0
          polyketide biosynthetic process + 0
          positive regulation of secondary metabolite biosynthetic process + 7
          regulation of secondary metabolite biosynthetic process + 12
          shamixanthone biosynthetic process 0
          siderophore biosynthetic process + 1
          tensidol A biosynthetic process + 0
          tensidol B biosynthetic process + 0
          terrequinone A biosynthetic process + 0
          toxin biosynthetic process + 5
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.