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ONTOLOGY REPORT - ANNOTATIONS


Term:modulation by host of viral process
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Accession:GO:0044788 term browser browse the term
Definition:A process in which a host organism modulates the frequency, rate or extent of any of a process being mediated by a virus with which it is infected.


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modulation by host of viral process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hspa8 heat shock protein family A (Hsp70) member 8 ISO (MGI:MGI:5787727|PMID:26581985) RGD PMID:26581985 MGI:MGI:5787727 NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179
JBrowse link
modulation by host of RNA binding by virus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 ISO (PMID:25116364) RGD PMID:25116364 NCBI chr13:48,679,726...48,709,663
Ensembl chr13:48,679,774...48,705,575
JBrowse link
modulation by host of viral genome replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ifi27 interferon, alpha-inducible protein 27 ISO (PMID:27777077) RGD PMID:27777077 NCBI chr 6:127,327,959...127,334,430
Ensembl chr 6:127,327,959...127,334,428
JBrowse link
modulation by host of viral RNA genome replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbxl2 F-box and leucine-rich repeat protein 2 ISO (PMID:15893726) RGD PMID:15893726 NCBI chr 8:122,240,393...122,290,439
Ensembl chr 8:122,243,016...122,311,431
JBrowse link
G Fmr1 FMRP translational regulator 1 IEA
ISO
GO_REF:0000107
(PMID:24514761)
Ensembl
RGD
PMID:24514761 GO_REF:0000107 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Phb prohibitin ISO (MGI:MGI:6436975|PMID:29324904) RGD PMID:29324904 MGI:MGI:6436975 NCBI chr10:83,476,107...83,488,878
Ensembl chr10:83,476,107...83,488,878
JBrowse link
G Vapb VAMP associated protein B and C ISO (PMID:19515777) RGD PMID:19515777 NCBI chr 3:171,832,558...171,871,042
Ensembl chr 3:171,832,500...171,868,647
JBrowse link
modulation by host of viral RNA-binding transcription factor activity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 ISO UniProtKB:P04608 (PMID:25116364) RGD PMID:25116364 NCBI chr13:48,679,726...48,709,663
Ensembl chr13:48,679,774...48,705,575
JBrowse link
modulation by host of viral transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Psmc3 proteasome 26S subunit, ATPase 3 IEA
ISO
GO_REF:0000107
(PMID:2194290), (PMID:8419915)
Ensembl
RGD
PMID:2194290, PMID:8419915 GO_REF:0000107 NCBI chr 3:79,876,938...79,882,319
Ensembl chr 3:79,876,938...79,882,319
JBrowse link
negative regulation by host of viral exo-alpha-sialidase activity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apcs amyloid P component, serum ISO
IEA
(PMID:23544079)
GO_REF:0000107
RGD
Ensembl
PMID:23544079 GO_REF:0000107 NCBI chr13:91,426,621...91,427,417
Ensembl chr13:91,426,479...91,427,575
JBrowse link
G Ptx3 pentraxin 3 ISO (PMID:23544079) RGD PMID:23544079 NCBI chr 2:158,097,843...158,103,653
Ensembl chr 2:158,097,843...158,103,653
JBrowse link
negative regulation by host of viral genome replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl12 chemokine (C-C motif) ligand 12 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr10:69,476,866...69,478,416
Ensembl chr10:69,476,775...69,478,462
JBrowse link
G Ccnk cyclin K ISO (PMID:21555514) RGD PMID:21555514 NCBI chr 6:132,090,235...132,113,560
Ensembl chr 6:132,090,218...132,113,557
JBrowse link
G Ceacam1 CEA cell adhesion molecule 1 ISO MGI:MGI:3053078 (MGI:MGI:55926|PMID:6327825) RGD PMID:6327825 MGI:MGI:55926 NCBI chr 1:82,327,955...82,344,345
Ensembl chr 1:82,327,955...82,344,345
JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked ISO (PMID:24380861) RGD PMID:24380861 NCBI chr  X:10,400,363...10,414,010
Ensembl chr  X:10,400,366...10,413,995
JBrowse link
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 ISO
ISS
(MGI:MGI:5700304|PMID:16601681)
GO_REF:0000024
RGD
UniProt
PMID:16601681 GO_REF:0000024, MGI:MGI:5700304 NCBI chr 3:110,159,624...110,245,382
Ensembl chr 3:110,159,708...110,249,217
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase ISO (PMID:25244949) RGD PMID:25244949 NCBI chr 1:48,880,015...50,069,998 JBrowse link
G Vapa VAMP associated protein A ISO (PMID:19515777) RGD PMID:19515777 NCBI chr 9:113,300,831...113,331,872
Ensembl chr 9:113,300,832...113,331,319
JBrowse link
G Vapb VAMP associated protein B and C ISO (PMID:19515777) RGD PMID:19515777 NCBI chr 3:171,832,558...171,871,042
Ensembl chr 3:171,832,500...171,868,647
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A ISO (PMID:23355615) RGD PMID:23355615 NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165
JBrowse link
negative regulation by host of viral glycoprotein metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apcs amyloid P component, serum ISO
IEA
(PMID:23544079)
GO_REF:0000107
RGD
Ensembl
PMID:23544079 GO_REF:0000107 NCBI chr13:91,426,621...91,427,417
Ensembl chr13:91,426,479...91,427,575
JBrowse link
G Ptx3 pentraxin 3 ISO (PMID:23544079) RGD PMID:23544079 NCBI chr 2:158,097,843...158,103,653
Ensembl chr 2:158,097,843...158,103,653
JBrowse link
negative regulation by host of viral process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apcs amyloid P component, serum IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:91,426,621...91,427,417
Ensembl chr13:91,426,479...91,427,575
JBrowse link
G Ceacam1 CEA cell adhesion molecule 1 ISO MGI:MGI:2180785|MGI:MGI:3053078 (MGI:MGI:1098064|PMID:9343248), (MGI:MGI:2148352|PMID:11483763), (MGI:MGI:3848729|PMID:19358828) RGD PMID:9343248, PMID:11483763, PMID:19358828 MGI:MGI:1098064, MGI:MGI:2148352, MGI:MGI:3848729 NCBI chr 1:82,327,955...82,344,345
Ensembl chr 1:82,327,955...82,344,345
JBrowse link
G Crp C-reactive protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:91,080,448...91,081,358
Ensembl chr13:91,054,974...91,093,713
JBrowse link
G Ltf lactotransferrin ISO (PMID:12522210) RGD PMID:12522210 NCBI chr 8:119,290,416...119,313,261
Ensembl chr 8:119,290,416...119,313,261
JBrowse link
G Mptx1 mucosal pentraxin 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:91,772,927...91,827,231
Ensembl chr13:91,773,004...91,776,397
JBrowse link
G Ptx3 pentraxin 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:158,097,843...158,103,653
Ensembl chr 2:158,097,843...158,103,653
JBrowse link
negative regulation by host of viral release from host cell term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vapb VAMP associated protein B and C ISO (PMID:19515777) RGD PMID:19515777 NCBI chr 3:171,832,558...171,871,042
Ensembl chr 3:171,832,500...171,868,647
JBrowse link
positive regulation by host of viral genome replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hspa8 heat shock protein family A (Hsp70) member 8 ISO (MGI:MGI:5787727|PMID:26581985) RGD PMID:26581985 MGI:MGI:5787727 NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179
JBrowse link
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 ISO (PMID:25116364) RGD PMID:25116364 NCBI chr13:48,679,726...48,709,663
Ensembl chr13:48,679,774...48,705,575
JBrowse link
G Ppib peptidylprolyl isomerase B ISO (PMID:15989969) RGD PMID:15989969 NCBI chr 8:71,719,681...71,725,538
Ensembl chr 8:71,719,563...71,725,562
JBrowse link
G Stom stomatin ISO (MGI:MGI:5616479|PMID:25262680) RGD PMID:25262680 MGI:MGI:5616479 NCBI chr 3:14,515,576...14,538,199
Ensembl chr 3:14,514,868...14,538,241
JBrowse link
G Tbc1d20 TBC1 domain family, member 20 ISO (PMID:17686842) RGD PMID:17686842 NCBI chr 3:147,772,006...147,790,946
Ensembl chr 3:147,772,165...147,789,158
JBrowse link
G Vapa VAMP associated protein A ISO (PMID:19515777) RGD PMID:19515777 NCBI chr 9:113,300,831...113,331,872
Ensembl chr 9:113,300,832...113,331,319
JBrowse link
G Vapb VAMP associated protein B and C ISO (PMID:19515777) RGD PMID:19515777 NCBI chr 3:171,832,558...171,871,042
Ensembl chr 3:171,832,500...171,868,647
JBrowse link
G Ythdc2 YTH domain containing 2 ISO (PMID:21559518) RGD PMID:21559518 NCBI chr 1:182,072,386...182,141,399
Ensembl chr 1:182,085,899...182,140,570
JBrowse link
positive regulation by host of viral process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa2 annexin A2 ISO (PMID:25593157) RGD PMID:25593157 NCBI chr 8:75,687,134...75,723,589
Ensembl chr 8:75,687,100...75,723,594
JBrowse link
G Apoe apolipoprotein E ISO
IEA
(PMID:25122793)
GO_REF:0000107
RGD
Ensembl
PMID:25122793 GO_REF:0000107 NCBI chr 1:80,612,894...80,616,820
Ensembl chr 1:80,612,895...80,617,057
JBrowse link
G Cav2 caveolin 2 ISO (PMID:25556234) RGD PMID:25556234 NCBI chr 4:44,573,264...44,580,640
Ensembl chr 4:44,573,264...44,580,638
JBrowse link
G Ceacam1 CEA cell adhesion molecule 1 ISO MGI:MGI:2180785|MGI:MGI:3027072 (MGI:MGI:1098064|PMID:9343248), (MGI:MGI:2148352|PMID:11483763) RGD PMID:9343248, PMID:11483763 MGI:MGI:1098064, MGI:MGI:2148352 NCBI chr 1:82,327,955...82,344,345
Ensembl chr 1:82,327,955...82,344,345
JBrowse link
G Cfl1 cofilin 1 ISO (PMID:25556234) RGD PMID:25556234 NCBI chr 1:220,869,805...220,873,337
Ensembl chr 1:220,869,805...220,873,337
JBrowse link
G Csf1r colony stimulating factor 1 receptor IEA
ISO
GO_REF:0000107
UniProtKB:P01580 (MGI:MGI:4840165|PMID:20889566)
Ensembl
RGD
PMID:20889566 GO_REF:0000107, MGI:MGI:4840165 NCBI chr18:56,414,493...56,458,300
Ensembl chr18:56,414,488...56,458,300
JBrowse link
G Ifng interferon gamma ISO UniProtKB:P09581 (MGI:MGI:4840165|PMID:20889566) RGD PMID:20889566 MGI:MGI:4840165 NCBI chr 7:61,337,383...61,341,419
Ensembl chr 7:61,337,381...61,341,419
JBrowse link
G Igf2r insulin-like growth factor 2 receptor ISO (PMID:20889566) RGD PMID:20889566 NCBI chr 1:48,176,095...48,264,482
Ensembl chr 1:48,176,106...48,264,477
JBrowse link
G LOC100911237 zinc finger protein 420-like ISO (PMID:25556234) RGD PMID:25556234 NCBI chr 1:31,494,043...31,519,034 JBrowse link
G Pc pyruvate carboxylase ISO (PMID:23861867) RGD PMID:23861867 NCBI chr 1:219,759,157...219,859,854
Ensembl chr 1:219,759,183...219,859,848
JBrowse link
G Ppib peptidylprolyl isomerase B ISO (PMID:15989969) RGD PMID:15989969 NCBI chr 8:71,719,681...71,725,538
Ensembl chr 8:71,719,563...71,725,562
JBrowse link
positive regulation by host of viral release from host cell term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cav2 caveolin 2 ISO
IEA
(PMID:25556234)
GO_REF:0000107
RGD
Ensembl
PMID:25556234 GO_REF:0000107 NCBI chr 4:44,573,264...44,580,640
Ensembl chr 4:44,573,264...44,580,638
JBrowse link
G LOC100911237 zinc finger protein 420-like ISO (PMID:25556234) RGD PMID:25556234 NCBI chr 1:31,494,043...31,519,034 JBrowse link
G Pc pyruvate carboxylase ISO
IEA
(PMID:23861867)
GO_REF:0000107
RGD
Ensembl
PMID:23861867 GO_REF:0000107 NCBI chr 1:219,759,157...219,859,854
Ensembl chr 1:219,759,183...219,859,848
JBrowse link
G Vapa VAMP associated protein A ISO (PMID:19515777) RGD PMID:19515777 NCBI chr 9:113,300,831...113,331,872
Ensembl chr 9:113,300,832...113,331,319
JBrowse link
G Vapb VAMP associated protein B and C ISO (PMID:19515777) RGD PMID:19515777 NCBI chr 3:171,832,558...171,871,042
Ensembl chr 3:171,832,500...171,868,647
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    interspecies interaction between organisms 1917
      interaction with symbiont 99
        modulation by host of symbiont process 67
          modulation by host of viral process 34
            modulation by host of viral genome replication + 19
            modulation by host of viral glycoprotein metabolic process + 2
            modulation by host of viral molecular function + 3
            modulation by host of viral release from host cell + 5
            negative regulation by host of viral process + 16
            positive regulation by host of viral process + 18
Path 2
Term Annotations click to browse term
  biological_process 20027
    interspecies interaction between organisms 1917
      symbiotic process 400
        interaction with symbiont 99
          modulation by host of symbiont process 67
            modulation by host of viral process 34
              modulation by host of viral genome replication + 19
              modulation by host of viral glycoprotein metabolic process + 2
              modulation by host of viral molecular function + 3
              modulation by host of viral release from host cell + 5
              negative regulation by host of viral process + 16
              positive regulation by host of viral process + 18
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.