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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA packaging complex
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Accession:GO:0044815 term browser browse the term
Definition:A protein complex that plays a role in the process of DNA packaging.


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DNA packaging complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G H2bc1 H2B clustered histone 1 JBrowse link 17 43,423,111 43,423,580 RGD:1624291
G LOC100363125 rCG42854-like JBrowse link X 13,991,860 13,992,606 RGD:1624291
condensin complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ncapd2 non-SMC condensin I complex, subunit D2 JBrowse link 4 157,682,855 157,705,903 RGD:1624291
G Ncapd3 non-SMC condensin II complex, subunit D3 JBrowse link 8 28,075,629 28,145,024 RGD:1624291
G Ncapg non-SMC condensin I complex, subunit G JBrowse link 14 69,898,268 69,927,885 RGD:1624291
G Ncapg2 non-SMC condensin II complex, subunit G2 JBrowse link 6 144,291,313 144,362,454 RGD:1624291
G Ncaph non-SMC condensin I complex, subunit H JBrowse link 3 119,583,798 119,611,148 RGD:1624291
G Ncaph2 non-SMC condensin II complex, subunit H2 JBrowse link 7 130,326,597 130,343,655 RGD:1600115
RGD:13792537
RGD:1624291
G Smc2 structural maintenance of chromosomes 2 JBrowse link 5 68,717,509 68,764,080 RGD:1624291
G Smc4 structural maintenance of chromosomes 4 JBrowse link 2 165,600,934 165,629,415 RGD:1624291
condensin core heterodimer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smc2 structural maintenance of chromosomes 2 JBrowse link 5 68,717,509 68,764,080 RGD:1600115
RGD:1624291
G Smc4 structural maintenance of chromosomes 4 JBrowse link 2 165,600,934 165,629,415 RGD:1600115
RGD:1624291
nuclear condensin complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ncapd2 non-SMC condensin I complex, subunit D2 JBrowse link 4 157,682,855 157,705,903 RGD:13792537
G Ncapd3 non-SMC condensin II complex, subunit D3 JBrowse link 8 28,075,629 28,145,024 RGD:1624291
RGD:13792537
G Ncaph non-SMC condensin I complex, subunit H JBrowse link 3 119,583,798 119,611,148 RGD:13792537
nuclear nucleosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cenpa centromere protein A JBrowse link 6 27,072,259 27,080,863 RGD:1624291
G H1f4 H1.4 linker histone, cluster member JBrowse link 17 43,734,461 43,735,120 RGD:12793017
G H2afb3 H2A histone family, member B3 JBrowse link X 88,602,135 88,602,485 RGD:1624291
G H2bc1 H2B clustered histone 1 JBrowse link 17 43,423,111 43,423,580 RGD:1624291
G H3c1 H3 clustered histone 1 JBrowse link 17 43,616,206 43,616,735 RGD:1624291
G H3f3a H3 histone family member 3A JBrowse link 13 99,091,246 99,102,828 RGD:1624291
G H3f3b H3 histone family member 3B JBrowse link 10 104,573,666 104,575,890 RGD:1624291
G H3f4 H3.4 histone JBrowse link 10 45,304,696 45,305,106 RGD:1624291
G H4f16 H4 histone 16 JBrowse link 17 43,821,122 43,821,587 RGD:1624291
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 JBrowse link 17 43,814,773 43,815,183 RGD:1624291
G Hist1h3b histone cluster 1, H3b JBrowse link 17 44,760,023 44,764,058 RGD:1624291
G Hist1h4b histone cluster 1 H4 family member B JBrowse link 17 44,522,144 44,526,587 RGD:1624291
G Hist1h4m histone cluster 1, H4m RGD:1624291
G Hist2h4 histone cluster 2, H4 JBrowse link 2 198,411,955 198,412,350 RGD:1624291
G Hist2h4a histone cluster 2 H4 family member A JBrowse link 4 170,800,539 170,800,979 RGD:1624291
G Irf4 interferon regulatory factor 4 JBrowse link 17 34,886,746 34,905,191 RGD:1624291
G LOC100912290 histone H4-like JBrowse link 4 170,092,457 170,117,607 RGD:1624291
G LOC102548682 histone H4-like JBrowse link 17 43,616,218 43,673,659 RGD:1624291
G LOC102551184 histone H4-like JBrowse link 17 43,770,198 43,821,579 RGD:1624291
G LOC684819 similar to H3 histone, family 2 isoform 2 JBrowse link 17 43,794,397 43,795,493 RGD:1624291
G Mphosph8 M-phase phosphoprotein 8 JBrowse link 15 36,918,843 36,946,712 RGD:1624291
RGD:1600115
G RGD1562378 histone H4 variant H4-v.1 JBrowse link 4 170,762,862 170,763,962 RGD:1624291
G Tcf3 transcription factor 3 JBrowse link 7 12,146,642 12,168,400 RGD:1624291
G Tnp1 transition protein 1 JBrowse link 9 80,294,837 80,295,446 RGD:1624291
RGD:1600115
G Tnp2 transition protein 2 JBrowse link 10 4,953,898 4,954,626 RGD:1600115
RGD:1624291
nucleosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07012583.2 RGD:1600115
G AABR07022134.1 RGD:1600115
G AABR07027811.2 RGD:1600115
G AABR07040686.1 RGD:1600115
G AABR07044065.1 RGD:1600115
G AABR07052692.1 RGD:1600115
G AABR07062859.1 RGD:1600115
G AC119603.1 RGD:1600115
G Glyr1 glyoxylate reductase 1 homolog JBrowse link 10 10,725,830 10,759,471 RGD:1624291
RGD:1600115
G H1f0 H1 histone family, member 0 JBrowse link 7 120,260,776 120,262,636 RGD:1600115
G H1f1 H1.1 linker histone, cluster member JBrowse link 17 43,614,101 43,614,844 RGD:1600115
G H1f10 H1.10 linker histone JBrowse link 4 119,889,016 119,892,661 RGD:1600115
G H1f2 H1.2 linker histone, cluster member JBrowse link 17 43,638,938 43,640,445 RGD:1600115
G H1f5 H1.5 linker histone, cluster member JBrowse link 17 44,766,313 44,766,981 RGD:1600115
G H1f6 H1.6 linker histone, cluster member JBrowse link 17 43,675,190 43,675,934 RGD:1600115
G H1f8 H1.8 linker histone JBrowse link 4 147,844,658 147,849,779 RGD:1600115
G H2ac1 H2A clustered histone 1 JBrowse link 17 43,422,454 43,422,846 RGD:1600115
G H2ac20 H2A clustered histone 20 JBrowse link 2 198,360,271 198,360,735 RGD:1600115
G H2ac21 H2A clustered histone 21 JBrowse link 2 198,359,754 198,360,146 RGD:1600115
G H2aj H2A.J histone JBrowse link 4 170,766,900 170,767,384 RGD:1600115
G H2ax H2A.X variant histone JBrowse link 8 48,665,652 48,666,981 RGD:1600115
G H2az1 H2A.Z variant histone 1 JBrowse link 2 243,105,224 243,107,333 RGD:1600115
G H2az2 H2A.Z variant histone 2 JBrowse link 14 86,687,782 86,706,639 RGD:1600115
G H2bc1 H2B clustered histone 1 JBrowse link 17 43,423,111 43,423,580 RGD:1624291
RGD:1600115
G H2bc12 H2B clustered histone 12 JBrowse link 17 44,527,421 44,527,801 RGD:1600115
G H2bc9 H2B clustered histone 9 JBrowse link 17 44,519,815 44,520,269 RGD:1600115
G H2bu1 H2B.U histone 1 JBrowse link 10 45,296,638 45,297,385 RGD:1600115
G H3c1 H3 clustered histone 1 JBrowse link 17 43,616,206 43,616,735 RGD:1624291
RGD:1600115
G H3f3a H3 histone family member 3A JBrowse link 13 99,091,246 99,102,828 RGD:1624291
G H3f3b H3 histone family member 3B JBrowse link 10 104,573,666 104,575,890 RGD:1624291
G H3f3c H3 histone family member 3C JBrowse link 7 94,777,659 94,778,656 RGD:1624291
RGD:1600115
G H3f4 H3.4 histone JBrowse link 10 45,304,696 45,305,106 RGD:1624291
G H4f16 H4 histone 16 JBrowse link 17 43,821,122 43,821,587 RGD:1624291
G H4f3 H1.3 linker histone, cluster member JBrowse link 17 43,797,711 43,798,450 RGD:1600115
G Hils1 histone linker H1 domain, spermatid-specific 1 JBrowse link 10 82,775,691 82,776,487 RGD:1624291
G Hist1h2ac histone cluster 1 H2A family member C JBrowse link 17 44,520,484 44,521,142 RGD:1600115
G Hist1h2af histone cluster 1 H2A family member F JBrowse link 17 43,627,237 43,627,629 RGD:1600115
G Hist1h2ah histone cluster 1 H2A family member H JBrowse link 17 43,632,354 43,632,851 RGD:1600115
G Hist1h2ai histone cluster 1, H2ai JBrowse link 17 44,758,412 44,759,675 RGD:1600115
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 JBrowse link 17 43,814,773 43,815,183 RGD:1624291
RGD:1600115
G hist1h2ail2 histone cluster 1, H2ai-like2 JBrowse link 17 44,794,087 44,794,563 RGD:1600115
G Hist1h2ak histone cluster 1, H2ak JBrowse link 17 44,840,990 44,841,382 RGD:1600115
G Hist1h2an histone cluster 1, H2an JBrowse link 17 43,779,174 43,779,775 RGD:1600115
G Hist1h2ao histone cluster 1, H2ao JBrowse link 17 44,744,534 44,744,931 RGD:1600115
G Hist1h2bc histone cluster 1, H2bc JBrowse link 17 44,736,184 44,738,393 RGD:1600115
G Hist1h2bd histone cluster 1 H2B family member D JBrowse link 17 44,833,924 44,834,305 RGD:1600115
G Hist1h2bg histone cluster 1, H2bg JBrowse link 17 43,817,316 43,817,717 RGD:1600115
G Hist1h2bl histone cluster 1 H2B family member l JBrowse link 17 44,748,445 44,748,910 RGD:1600115
G Hist1h2bo histone cluster 1 H2B family member o JBrowse link 17 44,756,557 44,758,170 RGD:1600115
G Hist1h2bq histone cluster 1 H2B family member Q JBrowse link 17 43,679,925 43,689,311 RGD:1600115
G Hist1h3b histone cluster 1, H3b JBrowse link 17 44,760,023 44,764,058 RGD:1624291
RGD:1600115
G Hist1h4b histone cluster 1 H4 family member B JBrowse link 17 44,522,144 44,526,587 RGD:1624291
G Hist1h4m histone cluster 1, H4m RGD:1624291
G Hist2h2aa2 histone cluster 2 H2A family member A2 JBrowse link 2 198,381,678 198,382,247 RGD:1600115
G Hist2h2aa3 histone cluster 2 H2A family member A3 JBrowse link 2 198,388,766 198,389,293 RGD:1600115
G Hist2h2be histone cluster 2 H2B family member E JBrowse link 2 198,360,837 198,363,399 RGD:1600115
G Hist2h3c2 histone cluster 2 H3 family member C2 JBrowse link 2 198,390,024 198,418,075 RGD:1624291
G Hist2h4 histone cluster 2, H4 JBrowse link 2 198,411,955 198,412,350 RGD:1624291
G Hist2h4a histone cluster 2 H4 family member A JBrowse link 4 170,800,539 170,800,979 RGD:1624291
G Hist3h2a histone cluster 3, H2a JBrowse link 10 45,297,603 45,299,155 RGD:1600115
G Hist3h2ba histone cluster 3, H2ba JBrowse link 10 45,289,741 45,290,370 RGD:1600115
G Hp1bp3 heterochromatin protein 1, binding protein 3 JBrowse link 5 156,581,732 156,609,059 RGD:1600115
G Hypm huntingtin interacting protein M JBrowse link X 13,989,401 13,989,955 RGD:1600115
G Kat6a lysine acetyltransferase 6A JBrowse link 16 73,942,669 74,020,750 RGD:1600115
G Kat6b lysine acetyltransferase 6B JBrowse link 15 2,811,933 2,966,833 RGD:1600115
G Kdm1b lysine demethylase 1B JBrowse link 17 17,987,972 18,028,808 RGD:1624291
G LOC100363125 rCG42854-like JBrowse link X 13,991,860 13,992,606 RGD:1600115
G LOC100364835 histone cluster 1, H2bd-like JBrowse link 17 43,764,654 43,765,101 RGD:1600115
G LOC100365043 histone cluster 1, H2bd-like JBrowse link 17 43,808,617 43,817,817 RGD:1600115
G LOC100910200 histone H2B type 1-C/E/G-like JBrowse link 17 44,792,982 44,793,896 RGD:1600115
G LOC100910554 histone H2A type 1-like JBrowse link 17 44,738,552 44,739,195 RGD:1600115
G LOC100912290 histone H4-like JBrowse link 4 170,092,457 170,117,607 RGD:1624291
G LOC102548682 histone H4-like JBrowse link 17 43,616,218 43,673,659 RGD:1624291
G LOC102549061 histone H2B type 1-N-like JBrowse link 17 43,627,872 43,628,518 RGD:1600115
G LOC102551184 histone H4-like JBrowse link 17 43,770,198 43,821,579 RGD:1624291
G LOC103690002 histone H2A.J JBrowse link 4 170,148,955 170,149,479 RGD:1600115
G LOC103690190 histone H2A type 1-E JBrowse link 17 44,747,686 44,748,229 RGD:1600115
G LOC103693372 histone H3.3-like JBrowse link 15 19,575,474 19,577,887 RGD:1600115
G LOC680063 similar to histone 2a RGD:1600115
G LOC680322 similar to Histone H2A type 1 JBrowse link 17 44,527,990 44,528,557 RGD:1600115
G LOC684444 similar to HIStone family member (his-41) JBrowse link 2 29,247,748 29,248,259 RGD:1600115
G LOC684762 similar to CG31613-PA JBrowse link 17 43,776,018 43,776,779 RGD:1624291
G LOC684773 similar to histone 2a JBrowse link 17 43,777,353 43,777,827 RGD:1600115
G LOC684797 similar to Histone H2B 291B JBrowse link 17 43,778,481 43,778,990 RGD:1600115
G LOC684819 similar to H3 histone, family 2 isoform 2 JBrowse link 17 43,794,397 43,795,493 RGD:1624291
G Macroh2a1 macroH2A.1 histone JBrowse link 17 9,282,109 9,344,698 RGD:728409
RGD:1600115
G Macroh2a2 macroH2A.2 histone JBrowse link 20 31,352,924 31,402,483 RGD:1600115
G Prm1 protamine 1 JBrowse link 10 4,945,995 4,946,241 RGD:1600115
G Prm2 protamine 2 JBrowse link 10 4,950,484 4,950,920 RGD:1600115
G Prm3 protamine 3 JBrowse link 10 4,951,557 4,952,071 RGD:1600115
G RGD1562378 histone H4 variant H4-v.1 JBrowse link 4 170,762,862 170,763,962 RGD:1624291
G RGD1564447 similar to Zgc:56193 JBrowse link 9 46,951,420 46,951,862 RGD:1600115
G RGD1564548 similar to H3 histone, family 3B JBrowse link 7 109,411,189 109,412,189 RGD:1600115
G Shprh SNF2 histone linker PHD RING helicase JBrowse link 1 5,240,139 5,313,064 RGD:1600115
G Slf1 SMC5-SMC6 complex localization factor 1 JBrowse link 2 4,095,126 4,195,819 RGD:1624291
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 JBrowse link 6 3,105,443 3,182,977 RGD:1600115
G Sos2 SOS Ras/Rho guanine nucleotide exchange factor 2 JBrowse link 6 91,885,292 92,008,059 RGD:1600115
G Sphk2 sphingosine kinase 2 JBrowse link 1 101,692,972 101,700,604 RGD:1624291
G Tnp1 transition protein 1 JBrowse link 9 80,294,837 80,295,446 RGD:1624291
RGD:13792537
RGD:1600115

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Term Annotations click to browse term
  cellular_component 19843
    protein-containing complex 5779
      DNA packaging complex 114
        condensin complex + 8
        nucleosome + 106
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.