ONTOLOGY REPORT - ANNOTATIONS


Term:intermediate filament-based process
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Accession:GO:0045103 term browser browse the term
Definition:Any cellular process that depends upon or alters the intermediate filament cytoskeleton, that part of the cytoskeleton comprising intermediate filaments and their associated proteins.


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intermediate filament-based process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gfap glial fibrillary acidic protein JBrowse link 10 90,990,762 90,999,435 RGD:1624291
G Kb23 type II keratin 23 JBrowse link 7 143,134,980 143,141,659 RGD:1303986
G Krt15 keratin 15 JBrowse link 10 88,046,803 88,050,622 RGD:1303986
G Krt17 keratin 17 JBrowse link 10 88,158,993 88,163,712 RGD:1303986
G Krt24 keratin 24 JBrowse link 10 87,190,184 87,195,075 RGD:1303986
G Krt39 keratin 39 JBrowse link 10 87,430,850 87,437,455 RGD:1303986
G Krt76 keratin 76 JBrowse link 7 143,488,668 143,497,108 RGD:1303986
G Sync syncoilin, intermediate filament protein JBrowse link 5 147,476,136 147,500,193 RGD:1624291
RGD:1600115
G Vim vimentin JBrowse link 17 80,882,715 80,891,200 RGD:1624291
intermediate filament bundle assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eppk1 epiplakin 1 JBrowse link 7 117,163,383 117,173,741 RGD:1624291
G Krt14 keratin 14 JBrowse link 10 88,118,029 88,122,233 RGD:1624291
RGD:1600115
G Nefh neurofilament heavy JBrowse link 14 85,181,572 85,191,557 RGD:8554743
RGD:1624291
G Nefl neurofilament light JBrowse link 15 44,799,378 44,803,251 RGD:1624291
G Nefm neurofilament medium JBrowse link 15 44,855,307 44,860,604 RGD:1624291
G Pkp1 plakophilin 1 JBrowse link 13 52,705,174 52,753,089 RGD:1624291
RGD:13792537
G Pkp2 plakophilin 2 JBrowse link 11 88,912,163 88,972,213 RGD:1624291
intermediate filament cytoskeleton organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atxn3 ataxin 3 JBrowse link 6 125,817,420 125,853,461 RGD:1624291
RGD:1600115
G Bfsp2 beaded filament structural protein 2 JBrowse link 8 111,908,614 111,965,889 RGD:1624291
RGD:1600115
G Csnk1a1 casein kinase 1, alpha 1 JBrowse link 18 56,887,722 56,910,610 RGD:1600115
RGD:1624291
G Dsp desmoplakin JBrowse link 17 27,286,811 27,334,453 RGD:1624291
RGD:13792537
G Dst dystonin JBrowse link 9 37,902,336 38,296,961 RGD:1624291
RGD:13792537
G Evpl envoplakin JBrowse link 10 105,100,538 105,116,802 RGD:13792537
G Fam83h family with sequence similarity 83, member H JBrowse link 7 117,062,748 117,070,936 RGD:1624291
RGD:1600115
G Ina internexin neuronal intermediate filament protein, alpha JBrowse link 1 266,782,835 266,794,389 RGD:1624291
G Kb15 type II keratin Kb15 JBrowse link 7 143,208,034 143,217,771 RGD:1624291
G Krt16 keratin 16 JBrowse link 10 88,149,210 88,152,167 RGD:1624291
G Krt18 keratin 18 JBrowse link 7 143,629,455 143,633,131 RGD:1624291
RGD:1600115
G Macf1 microtubule-actin crosslinking factor 1 JBrowse link 5 141,039,455 141,363,524 RGD:13792537
G Nefh neurofilament heavy JBrowse link 14 85,181,572 85,191,557 RGD:1624291
G Nefm neurofilament medium JBrowse link 15 44,855,307 44,860,604 RGD:1624291
G Plec plectin JBrowse link 7 117,230,319 117,291,859 RGD:13792537
G Ppl periplakin JBrowse link 10 10,644,572 10,690,223 RGD:13792537
G Prph peripherin JBrowse link 7 140,742,406 140,746,197 RGD:633740
RGD:1624291
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase JBrowse link 4 147,532,040 147,592,769 RGD:1624291
RGD:1600115
G Synm synemin JBrowse link 1 128,692,112 128,722,048 RGD:1600115
G Tor1a torsin family 1, member A JBrowse link 3 9,800,322 9,807,318 RGD:1624291
RGD:1600115
intermediate filament organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agfg1 ArfGAP with FG repeats 1 JBrowse link 9 88,607,508 88,663,486 RGD:1624291
RGD:1600115
G Des desmin JBrowse link 9 82,556,574 82,564,288 RGD:1600115
RGD:1624291
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 JBrowse link 4 2,711,329 2,774,969 RGD:1624291
G Dsp desmoplakin JBrowse link 17 27,286,811 27,334,453 RGD:1624291
RGD:1600115
G Eppk1 epiplakin 1 JBrowse link 7 117,163,383 117,173,741 RGD:1624291
G Flg filaggrin JBrowse link 2 193,565,401 193,574,297 RGD:1624291
G Gfap glial fibrillary acidic protein JBrowse link 10 90,990,762 90,999,435 RGD:1624291
RGD:1600115
G Kb15 type II keratin Kb15 JBrowse link 7 143,208,034 143,217,771 RGD:1624291
G Klhl24 kelch-like family member 24 JBrowse link 11 84,613,101 84,643,674 RGD:1600115
RGD:1624291
G Krt10 keratin 10 JBrowse link 10 87,296,445 87,301,307 RGD:1624291
G Krt17 keratin 17 JBrowse link 10 88,158,993 88,163,712 RGD:1624291
RGD:1600115
G Krt2 keratin 2 JBrowse link 7 143,412,858 143,420,463 RGD:1624291
RGD:1600115
G Krt20 keratin 20 JBrowse link 10 87,342,514 87,351,045 RGD:1600115
RGD:1624291
G Krt25 keratin 25 JBrowse link 10 87,225,361 87,238,659 RGD:1624291
RGD:1600115
G Krt71 keratin 71 JBrowse link 7 143,345,201 143,371,346 RGD:1624291
RGD:1600115
G Krt9 keratin 9 JBrowse link 10 88,102,519 88,107,232 RGD:1600115
RGD:1624291
G Mtm1 myotubularin 1 JBrowse link 6 18,821,821 18,840,449 RGD:1600115
RGD:1624291
G Nefl neurofilament light JBrowse link 15 44,799,378 44,803,251 RGD:1624291
G Shh sonic hedgehog signaling molecule JBrowse link 4 718,538 727,691 RGD:1624291
RGD:1600115
G Tchh trichohyalin JBrowse link 2 193,778,022 193,784,793 RGD:1624291
G Vim vimentin JBrowse link 17 80,882,715 80,891,200 RGD:1624291
RGD:1600115
intermediate filament polymerization or depolymerization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nefl neurofilament light JBrowse link 15 44,799,378 44,803,251 RGD:9698446
G Nefm neurofilament medium JBrowse link 15 44,855,307 44,860,604 RGD:9698446
neurofilament bundle assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nefh neurofilament heavy JBrowse link 14 85,181,572 85,191,557 RGD:1624291
G Nefl neurofilament light JBrowse link 15 44,799,378 44,803,251 RGD:9743935
RGD:1624291
G Nefm neurofilament medium JBrowse link 15 44,855,307 44,860,604 RGD:9743935
neurofilament cytoskeleton organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arhgef28 Rho guanine nucleotide exchange factor 28 JBrowse link 2 25,738,514 26,011,429 RGD:1624291
G Atp8a2 ATPase phospholipid transporting 8A2 JBrowse link 15 39,955,689 40,488,737 RGD:1624291
RGD:1600115
G Cln8 CLN8, transmembrane ER and ERGIC protein JBrowse link 16 79,828,321 79,838,212 RGD:1624291
RGD:1600115
G Ina internexin neuronal intermediate filament protein, alpha JBrowse link 1 266,782,835 266,794,389 RGD:1624291
RGD:1600115
G Ndel1 nudE neurodevelopment protein 1-like 1 JBrowse link 10 55,398,919 55,456,654 RGD:1624291
RGD:1600115
G Nefh neurofilament heavy JBrowse link 14 85,181,572 85,191,557 RGD:1624291
G Nefl neurofilament light JBrowse link 15 44,799,378 44,803,251 RGD:1624291
RGD:1600115
G Nefm neurofilament medium JBrowse link 15 44,855,307 44,860,604 RGD:1624291
G Sod1 superoxide dismutase 1 JBrowse link 11 30,363,282 30,368,858 RGD:1624291
RGD:1600115
G Vps54 VPS54 subunit of GARP complex JBrowse link 14 106,153,407 106,207,715 RGD:1624291
RGD:1600115
positive regulation of intermediate filament depolymerization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nes nestin JBrowse link 2 187,343,109 187,352,972 RGD:633505
postsynaptic intermediate filament cytoskeleton organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ina internexin neuronal intermediate filament protein, alpha JBrowse link 1 266,782,835 266,794,389 RGD:1600115
G Nefl neurofilament light JBrowse link 15 44,799,378 44,803,251 RGD:1600115

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  biological_process 17896
    cellular process 16040
      intermediate filament-based process 55
        intermediate filament cytoskeleton organization + 49
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.