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ONTOLOGY REPORT - ANNOTATIONS


Term:intermediate filament cytoskeleton organization
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Accession:GO:0045104 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising intermediate filaments and their associated proteins.
Synonyms:exact_synonym: intermediate filament cytoskeleton organisation
 related_synonym: intermediate filament cytoskeleton organization and biogenesis


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intermediate filament cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATXN3 ataxin 3 ISO (PMID:20637808) MGI PMID:20637808 NCBI chr14:72,693,446...72,741,772 JBrowse link
G BFSP2 beaded filament structural protein 2 ISO (MGI:2673300|PMID:15037121) MGI PMID:15037121 MGI:2673300 NCBI chr 3:130,470,362...130,543,610
Ensembl chr 3:137,946,969...138,016,584
JBrowse link
G CSNK1A1 casein kinase 1 alpha 1 ISO (PMID:23902688) UniProtKB PMID:23902688 NCBI chr 5:144,919,775...144,977,105
Ensembl chr 5:150,929,420...150,985,912
JBrowse link
G DSP desmoplakin ISO (MGI:1327099|PMID:9864371) MGI PMID:9864371 MGI:1327099 NCBI chr 6:7,381,046...7,426,408
Ensembl chr 6:7,664,211...7,709,391
JBrowse link
G DST dystonin ISO (PMID:11751855) UniProtKB PMID:11751855 NCBI chr 6:56,014,832...56,513,346 JBrowse link
G FAM83H family with sequence similarity 83 member H ISO (PMID:23902688) UniProtKB PMID:23902688 NCBI chr 8:140,476,051...140,492,613
Ensembl chr 8:143,491,945...143,496,919
JBrowse link
G INA internexin neuronal intermediate filament protein alpha ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chr10:99,877,665...99,890,947
Ensembl chr10:103,340,438...103,353,888
JBrowse link
G KRT16 keratin 16 ISO (MGI:2447093|PMID:12445204) MGI PMID:12445204 MGI:2447093 NCBI chr17:15,704,348...15,707,328
Ensembl chr17:15,922,924...15,929,437
JBrowse link
G KRT18 keratin 18 ISO (PMID:20346438) UniProtKB PMID:20346438 NCBI chr12:35,807,660...35,811,691
Ensembl chr12:36,587,149...36,591,196
JBrowse link
G KRT6C keratin 6C ISO (PMID:23662636) UniProtKB PMID:23662636 NCBI chr12:36,290,422...36,295,663 JBrowse link
G KRT74 keratin 74 ISO (PMID:20346438) UniProtKB PMID:20346438 NCBI chr12:36,190,338...36,198,338
Ensembl chr12:36,967,950...36,975,931
JBrowse link
G LOC100995271 keratin, type II cytoskeletal 3 ISO (PMID:9171831) UniProtKB PMID:9171831 NCBI chr12:35,964,291...35,970,709
Ensembl chr12:36,742,373...36,748,364
JBrowse link
G NEFH neurofilament heavy ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chr22:10,525,738...10,536,788 JBrowse link
G NEFM neurofilament medium ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chr 8:24,181,335...24,186,701
Ensembl chr 8:21,098,005...21,107,468
JBrowse link
G PRPH peripherin ISO (MGI:2653435|PMID:12642616) RGD
MGI
PMID:8575457, PMID:12642616 MGI:2653435, RGD:633740 NCBI chr12:39,451,832...39,456,800
Ensembl chr12:40,337,626...40,342,611
JBrowse link
G RAF1 Raf-1 proto-oncogene, serine/threonine kinase ISO (MGI:3612236|PMID:16365167) MGI PMID:16365167 MGI:3612236 NCBI chr 3:12,510,084...12,590,598
Ensembl chr 3:12,853,415...12,932,871
JBrowse link
G TOR1A torsin family 1 member A ISO (PMID:16361107) UniProtKB PMID:16361107 NCBI chr 9:100,940,554...100,951,726 JBrowse link
intermediate filament bundle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPPK1 epiplakin 1 ISO (MGI:5816446|PMID:20926261) UniProt PMID:20926261 MGI:5816446 NCBI chr 8:140,611,627...140,640,303 JBrowse link
G LOC100975309 keratin, type I cytoskeletal 14 ISO (PMID:11724817) UniProtKB PMID:11724817 NCBI chr17:15,730,066...15,734,665
Ensembl chr17:15,948,596...15,953,191
JBrowse link
G NEFH neurofilament heavy ISO PMID:11034913
(MGI:1342909|PMID:10461886)
BHF-UCL
MGI
PMID:10461886, PMID:11034913 MGI:1342909, RGD:8554743 NCBI chr22:10,525,738...10,536,788 JBrowse link
G NEFL neurofilament light ISO (MGI:5553249|PMID:11034913)
(MGI:1342909|PMID:10461886)
BHF-UCL
MGI
PMID:10461886, PMID:11034913 MGI:1342909, MGI:5553249 NCBI chr 8:24,218,510...24,224,627
Ensembl chr 8:21,134,533...21,140,694
JBrowse link
G NEFM neurofilament medium ISO (MGI:1342909|PMID:10461886) MGI PMID:10461886 MGI:1342909 NCBI chr 8:24,181,335...24,186,701
Ensembl chr 8:21,098,005...21,107,468
JBrowse link
G PKP1 plakophilin 1 ISO (PMID:10852826) BHF-UCL PMID:10852826 NCBI chr 1:176,881,154...176,930,814
Ensembl chr 1:181,182,829...181,232,347
JBrowse link
G PKP2 plakophilin 2 ISO (PMID:18474624) BHF-UCL PMID:18474624 NCBI chr12:53,322,227...53,428,747
Ensembl chr12:55,925,174...56,030,998
JBrowse link
intermediate filament organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGFG1 ArfGAP with FG repeats 1 ISO (MGI:3040020|PMID:14724135) MGI PMID:14724135 MGI:3040020 NCBI chr2B:114,711,697...114,800,680
Ensembl chr2B:233,542,185...233,604,897
JBrowse link
G BFSP1 beaded filament structural protein 1 ISO (MGI:6414994|PMID:27559293) UniProt PMID:27559293 MGI:6414994 NCBI chr20:17,452,664...17,527,917
Ensembl chr20:17,430,635...17,467,819
JBrowse link
G BFSP2 beaded filament structural protein 2 ISO (MGI:6414994|PMID:27559293) UniProt PMID:27559293 MGI:6414994 NCBI chr 3:130,470,362...130,543,610
Ensembl chr 3:137,946,969...138,016,584
JBrowse link
G DES desmin ISO (PMID:24200904), (PMID:26724190) UniProtKB PMID:24200904, PMID:26724190 NCBI chr2B:106,675,761...106,684,129
Ensembl chr2B:225,266,261...225,273,604
JBrowse link
G DNAJB6 DnaJ heat shock protein family (Hsp40) member B6 ISO (PMID:10954706) UniProtKB PMID:10954706 NCBI chr 7:148,952,823...149,034,578
Ensembl chr 7:160,646,321...160,726,447
JBrowse link
G DSP desmoplakin ISO (MGI:3723417|PMID:16917092) BHF-UCL PMID:16917092 MGI:3723417 NCBI chr 6:7,381,046...7,426,408
Ensembl chr 6:7,664,211...7,709,391
JBrowse link
G EPPK1 epiplakin 1 ISO (PMID:15671067)
(MGI:5805359|PMID:25617501)
(MGI:3805230|PMID:18285451)
(PMID:23398049)
UniProtKB
UniProt
PMID:15671067, PMID:18285451, PMID:23398049, PMID:25617501 MGI:3805230, MGI:5805359 NCBI chr 8:140,611,627...140,640,303 JBrowse link
G FLG filaggrin ISO (MGI:5521493|PMID:6170061) MGI PMID:6170061 MGI:5521493 NCBI chr 1:127,634,416...127,649,659 JBrowse link
G GFAP glial fibrillary acidic protein ISO (PMID:15732097)
(MGI:3719550|PMID:11487638)
(MGI:1889059|PMID:8692820)
UniProtKB
MGI
PMID:8692820, PMID:11487638, PMID:15732097 MGI:1889059, MGI:3719550 NCBI chr17:12,407,211...12,417,072
Ensembl chr17:12,579,754...12,591,961
JBrowse link
G KLHL24 kelch like family member 24 ISO (PMID:27889062) UniProtKB PMID:27889062 NCBI chr 3:180,669,767...180,731,186
Ensembl chr 3:188,839,457...188,885,385
JBrowse link
G KRT10 keratin 10 ISO (MGI:5603985|PMID:24751727) MGI PMID:24751727 MGI:5603985 NCBI chr17:16,461,624...16,466,136
Ensembl chr17:16,686,898...16,690,415
JBrowse link
G KRT2 keratin 2 ISO (MGI:5603985|PMID:24751727) MGI PMID:24751727 MGI:5603985 NCBI chr12:36,111,978...36,119,684
Ensembl chr12:36,889,619...36,896,813
JBrowse link
G KRT20 keratin 20 ISO (PMID:12857878)
(MGI:3759340|PMID:12857878)
UniProtKB
UniProt
PMID:12857878 MGI:3759340 NCBI chr17:16,396,544...16,408,104
Ensembl chr17:16,624,068...16,633,359
JBrowse link
G KRT25 keratin 25 ISO (MGI:3770737|PMID:17920809) MGI PMID:17920809 MGI:3770737 NCBI chr17:16,528,935...16,536,176
Ensembl chr17:16,753,964...16,761,197
JBrowse link
G KRT6A keratin 6A ISO (MGI:3525934|PMID:15601842) MGI PMID:15601842 MGI:3525934 NCBI chr12:36,270,961...36,277,035
Ensembl chr12:37,048,390...37,054,607
JBrowse link
G KRT71 keratin 71 ISO (PMID:22592156) UniProtKB PMID:22592156 NCBI chr12:36,211,012...36,220,249
Ensembl chr12:36,988,665...36,997,215
JBrowse link
G KRT9 keratin 9 ISO (PMID:10218578) UniProtKB PMID:10218578 NCBI chr17:15,744,879...15,751,055
Ensembl chr17:15,963,459...15,967,939
JBrowse link
G LOC100976433 keratin, type I cytoskeletal 17 ISO (MGI:3525934|PMID:15601842) MGI PMID:15601842 MGI:3525934 NCBI chr17:15,692,319...15,697,455
Ensembl chr17:15,910,899...15,916,079
JBrowse link
G MTM1 myotubularin 1 ISO (PMID:21135508) UniProtKB PMID:21135508 NCBI chr  X:140,218,742...140,323,495
Ensembl chr  X:150,174,758...150,255,381
JBrowse link
G NEFL neurofilament light ISO (PMID:12432080), (PMID:17052987)
(MGI:1096547|PMID:7946341), (MGI:2182115|PMID:2121744)
UniProtKB
MGI
PMID:2121744, PMID:7946341, PMID:12432080, PMID:17052987 MGI:1096547, MGI:2182115 NCBI chr 8:24,218,510...24,224,627
Ensembl chr 8:21,134,533...21,140,694
JBrowse link
G SHH sonic hedgehog signaling molecule ISO (MGI:1929969|PMID:11171399) MGI PMID:11171399 MGI:1929969 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
JBrowse link
G TCHH trichohyalin ISO (MGI:2678962|PMID:12853460) MGI PMID:12853460 MGI:2678962 NCBI chr 1:127,464,436...127,472,690 JBrowse link
G VIM vimentin ISO (MGI:6414994|PMID:27559293)
(MGI:3719550|PMID:11487638)
UniProt
MGI
PMID:11487638, PMID:27559293 MGI:3719550, MGI:6414994 NCBI chr10:17,546,389...17,554,702
Ensembl chr10:17,818,285...17,826,642
JBrowse link
intermediate filament polymerization or depolymerization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NEFL neurofilament light ISO RGD PMID:10362553 RGD:9698446 NCBI chr 8:24,218,510...24,224,627
Ensembl chr 8:21,134,533...21,140,694
JBrowse link
G NEFM neurofilament medium ISO RGD PMID:10362553 RGD:9698446 NCBI chr 8:24,181,335...24,186,701
Ensembl chr 8:21,098,005...21,107,468
JBrowse link
neurofilament bundle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NEFH neurofilament heavy ISO (PMID:7536898) BHF-UCL PMID:7536898 NCBI chr22:10,525,738...10,536,788 JBrowse link
G NEFL neurofilament light ISO (PMID:12432080)
(PMID:15857389)
RGD
UniProtKB
PMID:7721944, PMID:12432080, PMID:15857389 RGD:9743935 NCBI chr 8:24,218,510...24,224,627
Ensembl chr 8:21,134,533...21,140,694
JBrowse link
G NEFM neurofilament medium ISO RGD PMID:7721944 RGD:9743935 NCBI chr 8:24,181,335...24,186,701
Ensembl chr 8:21,098,005...21,107,468
JBrowse link
neurofilament cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARHGEF28 Rho guanine nucleotide exchange factor 28 ISO (MGI:3619625|PMID:16236762) MGI PMID:16236762 MGI:3619625 NCBI chr 5:41,376,631...41,690,868
Ensembl chr 5:41,976,692...42,231,634
JBrowse link
G CLN8 CLN8 transmembrane ER and ERGIC protein ISO (MGI:3709684|PMID:2061715) MGI PMID:2061715 MGI:3709684 NCBI chr 8:5,587,875...5,606,883
Ensembl chr 8:1,658,694...1,700,754
JBrowse link
G INA internexin neuronal intermediate filament protein alpha ISO (MGI:1339419|PMID:10350642) MGI PMID:10350642 MGI:1339419 NCBI chr10:99,877,665...99,890,947
Ensembl chr10:103,340,438...103,353,888
JBrowse link
G NDEL1 nudE neurodevelopment protein 1 like 1 ISO (MGI:3047464|PMID:15208636) MGI PMID:15208636 MGI:3047464 NCBI chr17:43,186,255...43,218,436 JBrowse link
G NEFH neurofilament heavy ISO (MGI:4836441|PMID:20633607)
(MGI:1342909|PMID:10461886)
MGI PMID:10461886, PMID:20633607 MGI:1342909, MGI:4836441 NCBI chr22:10,525,738...10,536,788 JBrowse link
G NEFL neurofilament light ISO (MGI:1934092|PMID:11343650)
(MGI:1100197|PMID:9398473), (MGI:1347434|PMID:15132161), (MGI:2148377|PMID:11487626), (MGI:2679157|PMID:14561875), (MGI:3664358|PMID:16920084)
(MGI:1342909|PMID:10461886)
(MGI:1339419|PMID:10350642)
MGI PMID:9398473, PMID:10350642, PMID:10461886, PMID:11343650, PMID:11487626, PMID:14561875, PMID:15132161, PMID:16920084 MGI:1100197, MGI:1339419, MGI:1342909, MGI:1347434, MGI:1934092, MGI:2148377, MGI:2679157, MGI:3664358 NCBI chr 8:24,218,510...24,224,627
Ensembl chr 8:21,134,533...21,140,694
JBrowse link
G NEFM neurofilament medium ISO (MGI:1203441|PMID:9566972)
(MGI:1342909|PMID:10461886)
MGI PMID:9566972, PMID:10461886 MGI:1203441, MGI:1342909 NCBI chr 8:24,181,335...24,186,701
Ensembl chr 8:21,098,005...21,107,468
JBrowse link
G SOD1 superoxide dismutase 1 ISO (MGI:1934092|PMID:11343650) MGI PMID:11343650 MGI:1934092 NCBI chr21:18,029,831...18,037,526 JBrowse link
G VPS54 VPS54 subunit of GARP complex ISO (MGI:2149279|PMID:11493023) MGI PMID:11493023 MGI:2149279 NCBI chr2A:63,959,930...64,087,102
Ensembl chr2A:65,086,374...65,176,634
JBrowse link
positive regulation of intermediate filament depolymerization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NES nestin ISO PMID:12686602 UniProt PMID:12686602 RGD:633505 NCBI chr 1:132,012,273...132,020,907
Ensembl chr 1:135,835,456...135,844,094
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12566
    cellular process 11671
      intermediate filament-based process 48
        intermediate filament cytoskeleton organization 47
          intermediate filament organization + 28
          intermediate filament polymerization or depolymerization + 3
          neurofilament cytoskeleton organization 9
          postsynaptic intermediate filament cytoskeleton organization 0
Path 2
Term Annotations click to browse term
  biological_process 12566
    cellular process 11671
      cellular component organization or biogenesis 5015
        cellular component organization 4935
          organelle organization 3054
            cytoskeleton organization 1099
              intermediate filament cytoskeleton organization 47
                intermediate filament organization + 28
                intermediate filament polymerization or depolymerization + 3
                neurofilament cytoskeleton organization 9
                postsynaptic intermediate filament cytoskeleton organization 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.