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ONTOLOGY REPORT - ANNOTATIONS


Term:intermediate filament cytoskeleton organization
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Accession:GO:0045104 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising intermediate filaments and their associated proteins.
Synonyms:exact_synonym: intermediate filament cytoskeleton organisation
 related_synonym: intermediate filament cytoskeleton organization and biogenesis


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intermediate filament cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn3 ataxin 3 ISO (PMID:20637808) MGI PMID:20637808 NCBI chrNW_004955438:14,405,415...14,443,457 JBrowse link
G Bfsp2 beaded filament structural protein 2 ISO (MGI:2673300|PMID:15037121) MGI PMID:15037121 MGI:2673300 NCBI chrNW_004955501:5,083,456...5,145,256
Ensembl chrNW_004955501:5,083,456...5,145,256
JBrowse link
G Csnk1a1 casein kinase 1 alpha 1 ISO (PMID:23902688) UniProtKB PMID:23902688 NCBI chrNW_004955415:4,921,356...4,966,705 JBrowse link
G Dsp desmoplakin ISO (MGI:1327099|PMID:9864371) MGI PMID:9864371 MGI:1327099 NCBI chrNW_004955465:6,356,970...6,391,206
Ensembl chrNW_004955465:6,356,863...6,392,207
JBrowse link
G Dst dystonin ISO (PMID:11751855) UniProtKB PMID:11751855 NCBI chrNW_004955502:3,175,918...3,610,823
Ensembl chrNW_004955502:3,267,527...3,610,823
JBrowse link
G Fam83h family with sequence similarity 83 member H ISO (PMID:23902688) UniProtKB PMID:23902688 NCBI chrNW_004955454:2,421,393...2,436,012
Ensembl chrNW_004955454:2,422,237...2,427,194
JBrowse link
G Ina internexin neuronal intermediate filament protein alpha ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chrNW_004955485:7,238,723...7,266,995 JBrowse link
G Krt18 keratin 18 ISO (PMID:20346438) UniProtKB PMID:20346438 NCBI chrNW_004955458:227,017...230,752
Ensembl chrNW_004955458:226,805...232,728
JBrowse link
G Krt3 keratin 3 ISO (PMID:9171831) UniProtKB PMID:9171831 NCBI chrNW_004955458:92,436...98,334
Ensembl chrNW_004955458:92,436...98,466
JBrowse link
G Nefh neurofilament heavy ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chrNW_004955455:3,735,330...3,744,714
Ensembl chrNW_004955455:3,735,410...3,744,107
JBrowse link
G Nefm neurofilament medium ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chrNW_004955403:47,920,408...47,926,922 JBrowse link
G Prph peripherin ISO (MGI:2653435|PMID:12642616) RGD
MGI
PMID:8575457, PMID:12642616 MGI:2653435, RGD:633740 NCBI chrNW_004955500:8,106,371...8,117,221
Ensembl chrNW_004955500:8,107,847...8,117,290
JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase ISO (MGI:3612236|PMID:16365167) MGI PMID:16365167 MGI:3612236 NCBI chrNW_004955429:17,980,956...18,049,723
Ensembl chrNW_004955429:18,025,932...18,049,723
JBrowse link
G Tor1a torsin family 1 member A ISO (PMID:16361107) UniProtKB PMID:16361107 NCBI chrNW_004955513:30,655...36,299
Ensembl chrNW_004955513:30,655...36,360
JBrowse link
intermediate filament bundle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eppk1 epiplakin 1 ISO (MGI:5816446|PMID:20926261) UniProt PMID:20926261 MGI:5816446 NCBI chrNW_004955454:2,512,151...2,526,080 JBrowse link
G Nefh neurofilament heavy ISO PMID:11034913
(MGI:1342909|PMID:10461886)
BHF-UCL
MGI
PMID:10461886, PMID:11034913 MGI:1342909, RGD:8554743 NCBI chrNW_004955455:3,735,330...3,744,714
Ensembl chrNW_004955455:3,735,410...3,744,107
JBrowse link
G Nefl neurofilament light ISO (MGI:1342909|PMID:10461886)
(MGI:5553249|PMID:11034913)
MGI
BHF-UCL
PMID:10461886, PMID:11034913 MGI:1342909, MGI:5553249 NCBI chrNW_004955403:47,946,413...47,951,734
Ensembl chrNW_004955403:47,946,353...47,952,026
JBrowse link
G Nefm neurofilament medium ISO (MGI:1342909|PMID:10461886) MGI PMID:10461886 MGI:1342909 NCBI chrNW_004955403:47,920,408...47,926,922 JBrowse link
G Pkp1 plakophilin 1 ISO (PMID:10852826) BHF-UCL PMID:10852826 NCBI chrNW_004955406:37,420,019...37,465,588
Ensembl chrNW_004955406:37,419,856...37,465,655
JBrowse link
G Pkp2 plakophilin 2 ISO (PMID:18474624) BHF-UCL PMID:18474624 NCBI chrNW_004955505:2,878,001...2,959,299
Ensembl chrNW_004955505:2,878,081...2,958,404
JBrowse link
intermediate filament organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agfg1 ArfGAP with FG repeats 1 ISO (MGI:3040020|PMID:14724135) MGI PMID:14724135 MGI:3040020 NCBI chrNW_004955453:7,066,509...7,127,878
Ensembl chrNW_004955453:7,069,806...7,109,703
JBrowse link
G Bfsp1 beaded filament structural protein 1 ISO (MGI:6414994|PMID:27559293) UniProt PMID:27559293 MGI:6414994 NCBI chrNW_004955415:26,507,381...26,535,545
Ensembl chrNW_004955415:26,507,528...26,535,551
JBrowse link
G Bfsp2 beaded filament structural protein 2 ISO (MGI:6414994|PMID:27559293) UniProt PMID:27559293 MGI:6414994 NCBI chrNW_004955501:5,083,456...5,145,256
Ensembl chrNW_004955501:5,083,456...5,145,256
JBrowse link
G Des desmin ISO (PMID:24200904), (PMID:26724190) UniProtKB PMID:24200904, PMID:26724190 NCBI chrNW_004955453:14,039,502...14,046,572
Ensembl chrNW_004955453:14,039,502...14,047,246
JBrowse link
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 ISO (PMID:10954706) UniProtKB PMID:10954706 NCBI chrNW_004955579:240,058...298,592 JBrowse link
G Dsp desmoplakin ISO (MGI:3723417|PMID:16917092) BHF-UCL PMID:16917092 MGI:3723417 NCBI chrNW_004955465:6,356,970...6,391,206
Ensembl chrNW_004955465:6,356,863...6,392,207
JBrowse link
G Eppk1 epiplakin 1 ISO (PMID:15671067)
(MGI:5805359|PMID:25617501)
(MGI:3805230|PMID:18285451)
(PMID:23398049)
UniProtKB
UniProt
PMID:15671067, PMID:18285451, PMID:23398049, PMID:25617501 MGI:3805230, MGI:5805359 NCBI chrNW_004955454:2,512,151...2,526,080 JBrowse link
G Gfap glial fibrillary acidic protein ISO (PMID:15732097)
(MGI:3719550|PMID:11487638)
(MGI:1889059|PMID:8692820)
UniProtKB
MGI
PMID:8692820, PMID:11487638, PMID:15732097 MGI:1889059, MGI:3719550 NCBI chrNW_004955451:17,695,835...17,703,894
Ensembl chrNW_004955451:17,695,835...17,703,268
JBrowse link
G Klhl24 kelch like family member 24 ISO (PMID:27889062) UniProtKB PMID:27889062 NCBI chrNW_004955420:23,700,030...23,733,021
Ensembl chrNW_004955420:23,700,035...23,735,301
JBrowse link
G Krt10 keratin 10 ISO (MGI:5603985|PMID:24751727) MGI PMID:24751727 MGI:5603985 NCBI chrNW_004955451:15,269,861...15,274,351
Ensembl chrNW_004955451:15,270,222...15,274,312
JBrowse link
G Krt17 keratin 17 ISO (MGI:3525934|PMID:15601842) MGI PMID:15601842 MGI:3525934 NCBI chrNW_004955451:15,940,137...15,944,392 JBrowse link
G Krt2 keratin 2 ISO (MGI:5603985|PMID:24751727) MGI PMID:24751727 MGI:5603985 NCBI chrNW_004955547:3,027,767...3,035,244
Ensembl chrNW_004955547:3,027,767...3,035,244
JBrowse link
G Krt25 keratin 25 ISO (MGI:3770737|PMID:17920809) MGI PMID:17920809 MGI:3770737 NCBI chrNW_004955451:15,216,868...15,223,383
Ensembl chrNW_004955451:15,216,809...15,264,012
JBrowse link
G Krt6a keratin 6A ISO (MGI:3525934|PMID:15601842) MGI PMID:15601842 MGI:3525934 NCBI chrNW_004955547:2,902,962...2,907,670 JBrowse link
G Krt71 keratin 71 ISO (PMID:22592156) UniProtKB PMID:22592156 NCBI chrNW_004955547:2,953,853...2,962,711
Ensembl chrNW_004955547:2,953,808...3,005,228
JBrowse link
G Krt9 keratin 9 ISO (PMID:10218578) UniProtKB PMID:10218578 NCBI chrNW_004955451:15,890,101...15,896,282
Ensembl chrNW_004955451:15,890,343...15,896,282
JBrowse link
G Mtm1 myotubularin 1 ISO (PMID:21135508) UniProtKB PMID:21135508 NCBI chrNW_004955498:6,329,402...6,444,708
Ensembl chrNW_004955498:6,329,275...6,445,169
JBrowse link
G Nefl neurofilament light ISO (PMID:12432080), (PMID:17052987)
(MGI:1096547|PMID:7946341), (MGI:2182115|PMID:2121744)
UniProtKB
MGI
PMID:2121744, PMID:7946341, PMID:12432080, PMID:17052987 MGI:1096547, MGI:2182115 NCBI chrNW_004955403:47,946,413...47,951,734
Ensembl chrNW_004955403:47,946,353...47,952,026
JBrowse link
G Shh sonic hedgehog signaling molecule ISO (MGI:1929969|PMID:11171399) MGI PMID:11171399 MGI:1929969 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Tchh trichohyalin ISO (MGI:2678962|PMID:12853460) MGI PMID:12853460 MGI:2678962 NCBI chrNW_004955589:293,887...302,128 JBrowse link
G Vim vimentin ISO (MGI:6414994|PMID:27559293)
(MGI:3719550|PMID:11487638)
UniProt
MGI
PMID:11487638, PMID:27559293 MGI:3719550, MGI:6414994 NCBI chrNW_004955429:10,708,852...10,716,743
Ensembl chrNW_004955429:10,707,719...10,717,554
JBrowse link
intermediate filament polymerization or depolymerization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nefl neurofilament light ISO RGD PMID:10362553 RGD:9698446 NCBI chrNW_004955403:47,946,413...47,951,734
Ensembl chrNW_004955403:47,946,353...47,952,026
JBrowse link
G Nefm neurofilament medium ISO RGD PMID:10362553 RGD:9698446 NCBI chrNW_004955403:47,920,408...47,926,922 JBrowse link
neurofilament bundle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nefh neurofilament heavy ISO (PMID:7536898) BHF-UCL PMID:7536898 NCBI chrNW_004955455:3,735,330...3,744,714
Ensembl chrNW_004955455:3,735,410...3,744,107
JBrowse link
G Nefl neurofilament light ISO (PMID:12432080)
(PMID:15857389)
UniProtKB
RGD
PMID:7721944, PMID:12432080, PMID:15857389 RGD:9743935 NCBI chrNW_004955403:47,946,413...47,951,734
Ensembl chrNW_004955403:47,946,353...47,952,026
JBrowse link
G Nefm neurofilament medium ISO RGD PMID:7721944 RGD:9743935 NCBI chrNW_004955403:47,920,408...47,926,922 JBrowse link
neurofilament cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef28 Rho guanine nucleotide exchange factor 28 ISO (MGI:3619625|PMID:16236762) MGI PMID:16236762 MGI:3619625 NCBI chrNW_004955425:26,690,863...26,987,900
Ensembl chrNW_004955425:26,690,681...26,989,187
JBrowse link
G Cln8 CLN8 transmembrane ER and ERGIC protein ISO (MGI:3709684|PMID:2061715) MGI PMID:2061715 MGI:3709684 NCBI chrNW_004955403:57,926,711...57,938,698
Ensembl chrNW_004955403:57,924,873...57,938,690
JBrowse link
G Ina internexin neuronal intermediate filament protein alpha ISO (MGI:1339419|PMID:10350642) MGI PMID:10350642 MGI:1339419 NCBI chrNW_004955485:7,238,723...7,266,995 JBrowse link
G Ndel1 nudE neurodevelopment protein 1 like 1 ISO (MGI:3047464|PMID:15208636) MGI PMID:15208636 MGI:3047464 NCBI chrNW_004955467:8,432,806...8,486,563
Ensembl chrNW_004955467:8,432,806...8,468,155
JBrowse link
G Nefh neurofilament heavy ISO (MGI:1342909|PMID:10461886)
(MGI:4836441|PMID:20633607)
MGI PMID:10461886, PMID:20633607 MGI:1342909, MGI:4836441 NCBI chrNW_004955455:3,735,330...3,744,714
Ensembl chrNW_004955455:3,735,410...3,744,107
JBrowse link
G Nefl neurofilament light ISO (MGI:1339419|PMID:10350642)
(MGI:1100197|PMID:9398473), (MGI:1347434|PMID:15132161), (MGI:2148377|PMID:11487626), (MGI:2679157|PMID:14561875), (MGI:3664358|PMID:16920084)
(MGI:1934092|PMID:11343650)
(MGI:1342909|PMID:10461886)
MGI PMID:9398473, PMID:10350642, PMID:10461886, PMID:11343650, PMID:11487626, PMID:14561875, PMID:15132161, PMID:16920084 MGI:1100197, MGI:1339419, MGI:1342909, MGI:1347434, MGI:1934092, MGI:2148377, MGI:2679157, MGI:3664358 NCBI chrNW_004955403:47,946,413...47,951,734
Ensembl chrNW_004955403:47,946,353...47,952,026
JBrowse link
G Nefm neurofilament medium ISO (MGI:1342909|PMID:10461886)
(MGI:1203441|PMID:9566972)
MGI PMID:9566972, PMID:10461886 MGI:1203441, MGI:1342909 NCBI chrNW_004955403:47,920,408...47,926,922 JBrowse link
G Sod1 superoxide dismutase 1 ISO (MGI:1934092|PMID:11343650) MGI PMID:11343650 MGI:1934092 NCBI chrNW_004955407:31,261,451...31,267,657
Ensembl chrNW_004955407:31,263,863...31,267,727
JBrowse link
G Vps54 VPS54 subunit of GARP complex ISO (MGI:2149279|PMID:11493023) MGI PMID:11493023 MGI:2149279 NCBI chrNW_004955424:20,329,009...20,443,652
Ensembl chrNW_004955424:20,327,754...20,445,980
JBrowse link
positive regulation of intermediate filament depolymerization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nes nestin ISO PMID:12686602 UniProt PMID:12686602 RGD:633505 NCBI chrNW_004955545:2,748,132...2,756,595
Ensembl chrNW_004955545:2,748,078...2,756,301
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11892
    cellular process 11098
      intermediate filament-based process 42
        intermediate filament cytoskeleton organization 41
          intermediate filament organization + 25
          intermediate filament polymerization or depolymerization + 3
          neurofilament cytoskeleton organization 9
          postsynaptic intermediate filament cytoskeleton organization 0
Path 2
Term Annotations click to browse term
  biological_process 11892
    cellular process 11098
      cellular component organization or biogenesis 4870
        cellular component organization 4790
          organelle organization 2964
            cytoskeleton organization 1063
              intermediate filament cytoskeleton organization 41
                intermediate filament organization + 25
                intermediate filament polymerization or depolymerization + 3
                neurofilament cytoskeleton organization 9
                postsynaptic intermediate filament cytoskeleton organization 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.