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ONTOLOGY REPORT - ANNOTATIONS


Term:intermediate filament cytoskeleton organization
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Accession:GO:0045104 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising intermediate filaments and their associated proteins.
Synonyms:exact_synonym: intermediate filament cytoskeleton organisation
 related_synonym: intermediate filament cytoskeleton organization and biogenesis


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intermediate filament cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATXN3 ataxin 3 ISO (PMID:20637808) MGI PMID:20637808 NCBI chr 8:1,318,440...1,354,814
Ensembl chr 8:1,247,155...1,354,720
JBrowse link
G BFSP2 beaded filament structural protein 2 IEA InterPro GO_REF:0000002 NCBI chr23:30,334,080...30,394,202
Ensembl chr23:29,992,021...30,396,840
JBrowse link
G CSNK1A1 casein kinase 1 alpha 1 IEA Ensembl GO_REF:0000107 NCBI chr 4:59,435,530...59,485,591
Ensembl chr 4:59,435,764...59,483,475
JBrowse link
G DSP desmoplakin IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr35:7,479,628...7,524,732
Ensembl chr35:7,479,643...7,524,044
JBrowse link
G DST dystonin IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr12:23,715,637...24,195,220
Ensembl chr12:23,716,466...24,195,416
JBrowse link
G EPPK1 epiplakin 1 IEA InterPro GO_REF:0000002 NCBI chr13:37,401,099...37,410,739 JBrowse link
G EVPL envoplakin IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 9:4,610,834...4,630,704
Ensembl chr 9:4,608,782...4,630,445
JBrowse link
G FAM83H family with sequence similarity 83 member H IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:37,324,090...37,332,421
Ensembl chr13:37,325,548...37,336,834
JBrowse link
G INA internexin neuronal intermediate filament protein alpha ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chr28:15,670,919...15,685,080
Ensembl chr28:15,670,999...15,683,380
JBrowse link
G KRT18 keratin 18 ISO (PMID:20346438) UniProtKB PMID:20346438 NCBI chr27:2,189,269...2,193,368
Ensembl chr27:2,189,269...2,193,368
JBrowse link
G KRT3 keratin 3 ISO (PMID:9171831) UniProtKB PMID:9171831 NCBI chr27:2,319,976...2,325,986 JBrowse link
G KRT74 keratin 74 ISO (PMID:20346438) UniProtKB PMID:20346438 NCBI chr27:2,519,244...2,528,107 JBrowse link
G MACF1 microtubule actin crosslinking factor 1 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr15:3,361,887...3,703,891
Ensembl chr15:3,362,867...3,573,325
JBrowse link
G NEFH neurofilament heavy ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chr26:22,726,523...22,735,129
Ensembl chr26:22,726,526...22,735,125
JBrowse link
G NEFM neurofilament medium ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chr25:32,493,517...32,498,615
Ensembl chr25:32,493,675...32,498,570
JBrowse link
G PLEC plectin IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr13:37,449,379...37,503,752
Ensembl chr13:37,450,248...37,513,523
JBrowse link
G PPL periplakin IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 6:36,498,562...36,542,101
Ensembl chr 6:36,491,561...36,624,532
JBrowse link
G PRPH peripherin IEA InterPro GO_REF:0000002 NCBI chr27:5,314,815...5,320,270
Ensembl chr27:5,314,807...5,320,089
JBrowse link
G RAF1 Raf-1 proto-oncogene, serine/threonine kinase IEA Ensembl GO_REF:0000107 NCBI chr20:5,892,839...5,972,672
Ensembl chr20:5,892,834...5,972,090
JBrowse link
G ROGDI rogdi atypical leucine zipper IEA InterPro GO_REF:0000002 NCBI chr 6:36,618,670...36,624,533
Ensembl chr 6:36,491,561...36,624,532
JBrowse link
G SYNM synemin IEA InterPro GO_REF:0000002 NCBI chr 3:41,595,218...41,623,475
Ensembl chr 3:41,594,580...41,623,627
JBrowse link
G TOR1A torsin family 1 member A IEA Ensembl GO_REF:0000107 NCBI chr 9:54,017,895...54,027,049
Ensembl chr 9:54,017,952...54,026,680
JBrowse link
intermediate filament bundle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPPK1 epiplakin 1 ISO (MGI:5816446|PMID:20926261) UniProt PMID:20926261 MGI:5816446 NCBI chr13:37,401,099...37,410,739 JBrowse link
G KRT14 keratin 14 IEA Ensembl GO_REF:0000107 NCBI chr 9:21,190,672...21,195,060
Ensembl chr 9:21,156,045...21,265,564
JBrowse link
G LOC100855871 plakophilin-1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:1,530,345...1,576,113 JBrowse link
G NEFH neurofilament heavy ISO PMID:11034913
(MGI:1342909|PMID:10461886)
BHF-UCL
MGI
PMID:10461886, PMID:11034913 MGI:1342909, RGD:8554743 NCBI chr26:22,726,523...22,735,129
Ensembl chr26:22,726,526...22,735,125
JBrowse link
G NEFL neurofilament light ISO (MGI:5553249|PMID:11034913)
(MGI:1342909|PMID:10461886)
BHF-UCL
MGI
PMID:10461886, PMID:11034913 MGI:1342909, MGI:5553249 NCBI chr25:32,463,361...32,468,965
Ensembl chr25:32,463,452...32,467,224
JBrowse link
G NEFM neurofilament medium ISO (MGI:1342909|PMID:10461886) MGI PMID:10461886 MGI:1342909 NCBI chr25:32,493,517...32,498,615
Ensembl chr25:32,493,675...32,498,570
JBrowse link
G PKP1 plakophilin 1 (ectodermal dysplasia/skin fragility syndrome) IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:1,921,143...1,966,910
Ensembl chr 7:1,921,143...1,967,703
JBrowse link
G PKP2 plakophilin 2 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr27:16,023,186...16,109,978
Ensembl chr27:16,023,224...16,109,603
JBrowse link
intermediate filament organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGFG1 ArfGAP with FG repeats 1 IEA Ensembl GO_REF:0000107 NCBI chr25:40,229,732...40,307,277
Ensembl chr25:40,243,734...40,301,135
JBrowse link
G BFSP1 beaded filament structural protein 1 IEA Ensembl GO_REF:0000107 NCBI chr24:5,432,098...5,500,278
Ensembl chr24:5,439,512...5,499,307
JBrowse link
G BFSP2 beaded filament structural protein 2 ISO (MGI:6414994|PMID:27559293) UniProt PMID:27559293 MGI:6414994 NCBI chr23:30,334,080...30,394,202
Ensembl chr23:29,992,021...30,396,840
JBrowse link
G DES desmin ISS
IEA
UniProtKB
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr37:25,933,525...25,939,910
Ensembl chr37:25,933,455...25,940,985
JBrowse link
G DNAJB6 DnaJ heat shock protein family (Hsp40) member B6 ISO (PMID:10954706) UniProtKB PMID:10954706 NCBI chr16:19,792,957...19,849,299
Ensembl chr16:19,768,639...19,848,139
JBrowse link
G DSP desmoplakin IEA Ensembl GO_REF:0000107 NCBI chr35:7,479,628...7,524,732
Ensembl chr35:7,479,643...7,524,044
JBrowse link
G EPPK1 epiplakin 1 ISO (PMID:15671067)
(MGI:3805230|PMID:18285451)
(MGI:5805359|PMID:25617501)
(PMID:23398049)
UniProtKB
UniProt
PMID:15671067, PMID:18285451, PMID:23398049, PMID:25617501 MGI:3805230, MGI:5805359 NCBI chr13:37,401,099...37,410,739 JBrowse link
G FLG filaggrin ISO (MGI:5521493|PMID:6170061) MGI PMID:6170061 MGI:5521493 NCBI chr17:61,217,915...61,233,068 JBrowse link
G GFAP glial fibrillary acidic protein IEA Ensembl GO_REF:0000107 NCBI chr 9:18,569,868...18,579,463
Ensembl chr 9:18,569,892...18,579,461
JBrowse link
G KLHL24 kelch like family member 24 IEA Ensembl GO_REF:0000107 NCBI chr34:16,583,683...16,625,778
Ensembl chr34:16,590,368...16,621,041
JBrowse link
G KRT10 keratin 10 ISO (MGI:5603985|PMID:24751727) MGI PMID:24751727 MGI:5603985 NCBI chr 9:21,863,715...21,868,587
Ensembl chr 9:21,863,767...21,868,587
JBrowse link
G KRT17 keratin 17 ISO (MGI:3525934|PMID:15601842) MGI PMID:15601842 MGI:3525934 NCBI chr 9:21,155,007...21,161,407
Ensembl chr 9:21,156,045...21,265,564
JBrowse link
G KRT2 keratin 2 IEA Ensembl GO_REF:0000107 NCBI chr27:2,447,854...2,454,492 JBrowse link
G KRT20 keratin 20 IEA Ensembl GO_REF:0000107 NCBI chr 9:21,808,171...21,818,301
Ensembl chr 9:21,808,548...21,817,387
JBrowse link
G KRT25 keratin 25 IEA Ensembl GO_REF:0000107 NCBI chr 9:21,940,413...21,947,487
Ensembl chr 9:21,940,413...21,947,487
JBrowse link
G KRT6A keratin 6A ISO (MGI:3525934|PMID:15601842) MGI PMID:15601842 MGI:3525934 NCBI chr27:2,609,414...2,623,810 JBrowse link
G KRT71 keratin 71 ISO (PMID:22592156) UniProtKB PMID:22592156 NCBI chr27:2,536,831...2,545,103 JBrowse link
G KRT9 keratin 9 ISS
IEA
UniProtKB
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr 9:21,204,213...21,210,793
Ensembl chr 9:21,203,618...21,209,421
JBrowse link
G MTM1 myotubularin 1 IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107 NCBI chr  X:118,820,644...118,917,166
Ensembl chr  X:118,820,494...118,916,368
JBrowse link
G NEFL neurofilament light ISO (PMID:12432080), (PMID:17052987)
(MGI:1096547|PMID:7946341), (MGI:2182115|PMID:2121744)
UniProtKB
MGI
PMID:2121744, PMID:7946341, PMID:12432080, PMID:17052987 MGI:1096547, MGI:2182115 NCBI chr25:32,463,361...32,468,965
Ensembl chr25:32,463,452...32,467,224
JBrowse link
G SHH sonic hedgehog signaling molecule IEA Ensembl GO_REF:0000107 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
G TCHH trichohyalin ISO (MGI:2678962|PMID:12853460) MGI PMID:12853460 MGI:2678962 NCBI chr17:61,095,132...61,102,663 JBrowse link
G VIM vimentin ISO (MGI:3719550|PMID:11487638)
(MGI:6414994|PMID:27559293)
MGI
UniProt
PMID:11487638, PMID:27559293 MGI:3719550, MGI:6414994 NCBI chr 2:19,671,316...19,679,367
Ensembl chr 2:19,671,316...19,679,466
JBrowse link
intermediate filament polymerization or depolymerization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NEFL neurofilament light ISO RGD PMID:10362553 RGD:9698446 NCBI chr25:32,463,361...32,468,965
Ensembl chr25:32,463,452...32,467,224
JBrowse link
G NEFM neurofilament medium ISO RGD PMID:10362553 RGD:9698446 NCBI chr25:32,493,517...32,498,615
Ensembl chr25:32,493,675...32,498,570
JBrowse link
neurofilament bundle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NEFH neurofilament heavy ISO (PMID:7536898) BHF-UCL PMID:7536898 NCBI chr26:22,726,523...22,735,129
Ensembl chr26:22,726,526...22,735,125
JBrowse link
G NEFL neurofilament light IEA Ensembl GO_REF:0000107 NCBI chr25:32,463,361...32,468,965
Ensembl chr25:32,463,452...32,467,224
JBrowse link
G NEFM neurofilament medium IEA InterPro GO_REF:0000002 NCBI chr25:32,493,517...32,498,615
Ensembl chr25:32,493,675...32,498,570
JBrowse link
neurofilament cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARHGEF28 Rho guanine nucleotide exchange factor 28 ISO (MGI:3619625|PMID:16236762) MGI PMID:16236762 MGI:3619625 NCBI chr 2:56,427,601...56,700,880
Ensembl chr 2:56,464,994...56,700,864
JBrowse link
G ATP8A2 ATPase phospholipid transporting 8A2 IEA Ensembl GO_REF:0000107 NCBI chr25:13,490,550...14,066,942
Ensembl chr25:13,495,970...14,066,513
JBrowse link
G CLN8 CLN8 transmembrane ER and ERGIC protein IEA Ensembl GO_REF:0000107 NCBI chr37:30,863,098...30,885,831
Ensembl chr37:30,867,479...30,884,895
JBrowse link
G INA internexin neuronal intermediate filament protein alpha IEA Ensembl GO_REF:0000107 NCBI chr28:15,670,919...15,685,080
Ensembl chr28:15,670,999...15,683,380
JBrowse link
G NDEL1 nudE neurodevelopment protein 1 like 1 IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr 5:33,187,614...33,244,483
Ensembl chr 5:33,204,452...33,266,052
JBrowse link
G NEFH neurofilament heavy ISO (MGI:1342909|PMID:10461886)
(MGI:4836441|PMID:20633607)
MGI PMID:10461886, PMID:20633607 MGI:1342909, MGI:4836441 NCBI chr26:22,726,523...22,735,129
Ensembl chr26:22,726,526...22,735,125
JBrowse link
G NEFL neurofilament light IEA Ensembl GO_REF:0000107 NCBI chr25:32,463,361...32,468,965
Ensembl chr25:32,463,452...32,467,224
JBrowse link
G NEFM neurofilament medium ISO (MGI:1203441|PMID:9566972)
(MGI:1342909|PMID:10461886)
MGI PMID:9566972, PMID:10461886 MGI:1203441, MGI:1342909 NCBI chr25:32,493,517...32,498,615
Ensembl chr25:32,493,675...32,498,570
JBrowse link
G SOD1 superoxide dismutase 1 IEA Ensembl GO_REF:0000107 NCBI chr31:26,540,291...26,544,212
Ensembl chr31:26,486,274...26,662,815
JBrowse link
G VPS54 VPS54 subunit of GARP complex IEA Ensembl GO_REF:0000107 NCBI chr10:63,598,373...63,676,753
Ensembl chr10:63,599,229...63,676,747
JBrowse link
positive regulation of intermediate filament depolymerization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NES nestin ISO PMID:12686602 UniProt PMID:12686602 RGD:633505 NCBI chr 7:41,296,395...41,305,641
Ensembl chr 7:41,295,989...41,303,736
JBrowse link
postsynaptic intermediate filament cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G INA internexin neuronal intermediate filament protein alpha IEA GOC GO_REF:0000108 NCBI chr28:15,670,919...15,685,080
Ensembl chr28:15,670,999...15,683,380
JBrowse link
G NEFL neurofilament light IEA GOC GO_REF:0000108 NCBI chr25:32,463,361...32,468,965
Ensembl chr25:32,463,452...32,467,224
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16190
    cellular process 15467
      intermediate filament-based process 54
        intermediate filament cytoskeleton organization 53
          intermediate filament organization + 29
          intermediate filament polymerization or depolymerization + 3
          neurofilament cytoskeleton organization 10
          postsynaptic intermediate filament cytoskeleton organization 2
Path 2
Term Annotations click to browse term
  biological_process 16190
    cellular process 15467
      cellular component organization or biogenesis 6052
        cellular component organization 5884
          organelle organization 3731
            cytoskeleton organization 1401
              intermediate filament cytoskeleton organization 53
                intermediate filament organization + 29
                intermediate filament polymerization or depolymerization + 3
                neurofilament cytoskeleton organization 10
                postsynaptic intermediate filament cytoskeleton organization 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.