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ONTOLOGY REPORT - ANNOTATIONS


Term:intermediate filament cytoskeleton organization
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Accession:GO:0045104 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising intermediate filaments and their associated proteins.
Synonyms:exact_synonym: intermediate filament cytoskeleton organisation
 related_synonym: intermediate filament cytoskeleton organization and biogenesis


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intermediate filament cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATXN3 ataxin 3 IMP (PMID:20637808) MGI PMID:20637808 NCBI chr14:92,058,552...92,106,582
Ensembl chr14:92,044,496...92,106,621
JBrowse link
G BFSP2 beaded filament structural protein 2 ISO (MGI:2673300|PMID:15037121) MGI PMID:15037121 MGI:2673300 NCBI chr 3:133,397,882...133,475,208
Ensembl chr 3:133,400,056...133,475,222
JBrowse link
G CSNK1A1 casein kinase 1 alpha 1 IMP (PMID:23902688) UniProtKB PMID:23902688 NCBI chr 5:149,492,982...149,551,439
Ensembl chr 5:149,492,982...149,551,471
JBrowse link
G DSP desmoplakin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:7,541,671...7,586,714
Ensembl chr 6:7,541,617...7,586,714
JBrowse link
G DST dystonin NAS
IBA
IEA
IEP
(PMID:11375975)
(PMID:21873635)
(PMID:11751855)
UniProtKB
GO_Central
InterPro
PMID:11375975, PMID:11751855, PMID:21873635 GO_REF:0000002 NCBI chr 6:56,457,996...56,954,830
Ensembl chr 6:56,457,987...56,954,649
JBrowse link
G EPPK1 epiplakin 1 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 8:143,857,319...143,879,043
Ensembl chr 8:143,857,324...143,878,467
Ensembl chr 8:143,857,324...143,878,467
JBrowse link
G ERBIN erbb2 interacting protein NAS (PMID:11375975) UniProtKB PMID:11375975 NCBI chr 5:65,926,575...66,082,546
Ensembl chr 5:65,926,475...66,082,549
JBrowse link
G EVPL envoplakin IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr17:76,006,845...76,027,306
Ensembl chr17:76,004,502...76,027,452
Ensembl chr17:76,004,502...76,027,452
JBrowse link
G EVPLL envoplakin like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:18,377,673...18,389,652
Ensembl chr17:18,377,778...18,389,647
JBrowse link
G FAM83H family with sequence similarity 83 member H IMP
IBA
(PMID:23902688)
(PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:23902688 NCBI chr 8:143,723,933...143,733,779
Ensembl chr 8:143,723,933...143,738,234
JBrowse link
G INA internexin neuronal intermediate filament protein alpha ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chr10:103,277,138...103,290,346
Ensembl chr10:103,277,138...103,290,346
JBrowse link
G KRT16 keratin 16 ISO (MGI:2447093|PMID:12445204) MGI PMID:12445204 MGI:2447093 NCBI chr17:41,609,778...41,612,767
Ensembl chr17:41,609,778...41,615,899
JBrowse link
G KRT18 keratin 18 IDA (PMID:20346438) UniProtKB PMID:20346438 NCBI chr12:52,948,855...52,952,906
Ensembl chr12:52,948,871...52,952,906
JBrowse link
G KRT3 keratin 3 IMP (PMID:9171831) UniProtKB PMID:9171831 NCBI chr12:52,789,685...52,805,735
Ensembl chr12:52,789,685...52,796,117
JBrowse link
G KRT6C keratin 6C IMP (PMID:23662636) UniProtKB PMID:23662636 NCBI chr12:52,468,516...52,473,805
Ensembl chr12:52,468,516...52,473,805
JBrowse link
G KRT74 keratin 74 IDA (PMID:20346438) UniProtKB PMID:20346438 NCBI chr12:52,565,782...52,573,843
Ensembl chr12:52,565,782...52,573,843
JBrowse link
G MACF1 microtubule actin crosslinking factor 1 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 1:39,084,167...39,487,138
Ensembl chr 1:39,081,316...39,487,177
JBrowse link
G NEFH neurofilament heavy ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chr22:29,480,218...29,491,390
Ensembl chr22:29,480,218...29,491,390
JBrowse link
G NEFM neurofilament medium ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chr 8:24,913,761...24,919,093
Ensembl chr 8:24,913,758...24,919,098
JBrowse link
G PLEC plectin IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 8:143,915,153...143,976,800
Ensembl chr 8:143,915,147...143,976,734
JBrowse link
G PPL periplakin IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr16:4,882,507...4,937,148
Ensembl chr16:4,882,507...4,960,741
JBrowse link
G PRPH peripherin IEA InterPro GO_REF:0000002 NCBI chr12:49,295,144...49,298,698
Ensembl chr12:49,293,252...49,298,686
JBrowse link
G RAF1 Raf-1 proto-oncogene, serine/threonine kinase IEA Ensembl GO_REF:0000107 NCBI chr 3:12,583,601...12,664,117
Ensembl chr 3:12,583,601...12,664,226
JBrowse link
G SYNM synemin IEA
TAS
(PMID:16777071) InterPro
UniProtKB
PMID:16777071 GO_REF:0000002 NCBI chr15:99,105,069...99,136,586
Ensembl chr15:99,098,217...99,135,593
JBrowse link
G TOR1A torsin family 1 member A IMP
IEA
(PMID:16361107) UniProtKB
InterPro
PMID:16361107 GO_REF:0000002 NCBI chr 9:129,812,942...129,824,136
Ensembl chr 9:129,812,942...129,824,244
JBrowse link
intermediate filament bundle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPPK1 epiplakin 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:143,857,319...143,879,043
Ensembl chr 8:143,857,324...143,878,467
Ensembl chr 8:143,857,324...143,878,467
JBrowse link
G KRT14 keratin 14 IMP (PMID:11724817) UniProtKB PMID:11724817 NCBI chr17:41,582,279...41,586,895
Ensembl chr17:41,582,279...41,586,895
JBrowse link
G NEFH neurofilament heavy ISO PMID:11034913
(MGI:1342909|PMID:10461886)
BHF-UCL
MGI
PMID:10461886, PMID:11034913 MGI:1342909, RGD:8554743 NCBI chr22:29,480,218...29,491,390
Ensembl chr22:29,480,218...29,491,390
JBrowse link
G NEFL neurofilament light ISO (MGI:5553249|PMID:11034913)
(MGI:1342909|PMID:10461886)
BHF-UCL
MGI
PMID:10461886, PMID:11034913 MGI:1342909, MGI:5553249 NCBI chr 8:24,950,955...24,956,612
Ensembl chr 8:24,950,955...24,957,110
Ensembl chr 8:24,950,955...24,957,110
JBrowse link
G NEFM neurofilament medium ISO (MGI:1342909|PMID:10461886) MGI PMID:10461886 MGI:1342909 NCBI chr 8:24,913,761...24,919,093
Ensembl chr 8:24,913,758...24,919,098
JBrowse link
G PKP1 plakophilin 1 IDA
IBA
(PMID:10852826)
(PMID:21873635)
BHF-UCL
GO_Central
PMID:10852826, PMID:21873635 NCBI chr 1:201,283,506...201,332,989
Ensembl chr 1:201,283,452...201,332,993
JBrowse link
G PKP2 plakophilin 2 IMP
IBA
(PMID:18474624)
(PMID:21873635)
BHF-UCL
GO_Central
PMID:18474624, PMID:21873635 NCBI chr12:32,790,755...32,896,777
Ensembl chr12:32,790,745...32,896,840
Ensembl chr12:32,790,745...32,896,840
JBrowse link
intermediate filament organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGFG1 ArfGAP with FG repeats 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:227,472,156...227,561,217
Ensembl chr 2:227,472,152...227,561,214
JBrowse link
G BFSP1 beaded filament structural protein 1 ISS UniProt GO_REF:0000024 NCBI chr20:17,493,905...17,569,220
Ensembl chr20:17,493,905...17,569,220
JBrowse link
G BFSP2 beaded filament structural protein 2 ISS UniProt GO_REF:0000024 NCBI chr 3:133,397,882...133,475,208
Ensembl chr 3:133,400,056...133,475,222
JBrowse link
G DES desmin IMP (PMID:24200904), (PMID:26724190) UniProtKB PMID:24200904, PMID:26724190 NCBI chr 2:219,418,377...219,426,734
Ensembl chr 2:219,418,377...219,426,734
JBrowse link
G DNAJB6 DnaJ heat shock protein family (Hsp40) member B6 IDA (PMID:10954706) UniProtKB PMID:10954706 NCBI chr 7:157,337,004...157,417,439
Ensembl chr 7:157,335,381...157,417,439
JBrowse link
G DSP desmoplakin ISS (PMID:16917092) BHF-UCL PMID:16917092 NCBI chr 6:7,541,671...7,586,714
Ensembl chr 6:7,541,617...7,586,714
JBrowse link
G EPPK1 epiplakin 1 IMP
ISS
IDA
(PMID:15671067)
(PMID:23398049)
UniProtKB PMID:15671067, PMID:23398049 GO_REF:0000024 NCBI chr 8:143,857,319...143,879,043
Ensembl chr 8:143,857,324...143,878,467
Ensembl chr 8:143,857,324...143,878,467
JBrowse link
G FLG filaggrin ISO (MGI:5521493|PMID:6170061) MGI PMID:6170061 MGI:5521493 NCBI chr 1:152,302,165...152,325,239
Ensembl chr 1:152,302,165...152,325,239
Ensembl chr 1:152,302,165...152,325,239
JBrowse link
G GFAP glial fibrillary acidic protein IDA
IEA
(PMID:15732097) UniProtKB
Ensembl
PMID:15732097 GO_REF:0000107 NCBI chr17:44,903,159...44,915,552
Ensembl chr17:44,903,159...44,916,937
JBrowse link
G KLHL24 kelch like family member 24 IMP (PMID:27889062) UniProtKB PMID:27889062 NCBI chr 3:183,635,619...183,684,519
Ensembl chr 3:183,635,610...183,684,519
JBrowse link
G KRT10 keratin 10 ISO (MGI:5603985|PMID:24751727) MGI PMID:24751727 MGI:5603985 NCBI chr17:40,818,117...40,822,614
Ensembl chr17:40,818,117...40,822,614
JBrowse link
G KRT17 keratin 17 IEA Ensembl GO_REF:0000107 NCBI chr17:41,619,442...41,624,575
Ensembl chr17:41,619,442...41,624,842
JBrowse link
G KRT2 keratin 2 IEA Ensembl GO_REF:0000107 NCBI chr12:52,644,558...52,652,211
Ensembl chr12:52,644,558...52,652,211
JBrowse link
G KRT20 keratin 20 IMP (PMID:12857878) UniProtKB PMID:12857878 NCBI chr17:40,875,889...40,885,242
Ensembl chr17:40,875,889...40,885,242
JBrowse link
G KRT25 keratin 25 IEA Ensembl GO_REF:0000107 NCBI chr17:40,748,021...40,755,542
Ensembl chr17:40,748,021...40,755,331
JBrowse link
G KRT6A keratin 6A ISO (MGI:3525934|PMID:15601842) MGI PMID:15601842 MGI:3525934 NCBI chr12:52,487,176...52,493,257
Ensembl chr12:52,487,176...52,493,257
JBrowse link
G KRT71 keratin 71 IMP (PMID:22592156) UniProtKB PMID:22592156 NCBI chr12:52,543,909...52,553,145
Ensembl chr12:52,543,909...52,553,145
JBrowse link
G KRT9 keratin 9 IMP (PMID:10218578) UniProtKB PMID:10218578 NCBI chr17:41,565,836...41,572,059
Ensembl chr17:41,565,836...41,572,059
JBrowse link
G MTM1 myotubularin 1 IEA
IMP
(PMID:21135508) InterPro
UniProtKB
PMID:21135508 GO_REF:0000002 NCBI chr  X:150,562,658...150,673,143
Ensembl chr  X:150,568,619...150,673,322
Ensembl chr  X:150,568,619...150,673,322
JBrowse link
G NEFL neurofilament light IMP (PMID:12432080), (PMID:17052987) UniProtKB PMID:12432080, PMID:17052987 NCBI chr 8:24,950,955...24,956,612
Ensembl chr 8:24,950,955...24,957,110
Ensembl chr 8:24,950,955...24,957,110
JBrowse link
G SHH sonic hedgehog signaling molecule IEA Ensembl GO_REF:0000107 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463
JBrowse link
G TCHH trichohyalin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:152,106,317...152,115,444
Ensembl chr 1:152,106,317...152,115,454
JBrowse link
G VIM vimentin ISS UniProt GO_REF:0000024 NCBI chr10:17,228,241...17,237,593
Ensembl chr10:17,228,241...17,237,593
JBrowse link
intermediate filament polymerization or depolymerization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NEFL neurofilament light IEA Ensembl GO_REF:0000107 NCBI chr 8:24,950,955...24,956,612
Ensembl chr 8:24,950,955...24,957,110
Ensembl chr 8:24,950,955...24,957,110
JBrowse link
G NEFM neurofilament medium ISO RGD PMID:10362553 RGD:9698446 NCBI chr 8:24,913,761...24,919,093
Ensembl chr 8:24,913,758...24,919,098
JBrowse link
neurofilament bundle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NEFH neurofilament heavy IMP (PMID:7536898) BHF-UCL PMID:7536898 NCBI chr22:29,480,218...29,491,390
Ensembl chr22:29,480,218...29,491,390
JBrowse link
G NEFL neurofilament light IDA
IMP
(PMID:12432080)
(PMID:15857389)
UniProtKB PMID:12432080, PMID:15857389 NCBI chr 8:24,950,955...24,956,612
Ensembl chr 8:24,950,955...24,957,110
Ensembl chr 8:24,950,955...24,957,110
JBrowse link
G NEFM neurofilament medium TAS
IEA
(PMID:17498690) BHF-UCL
InterPro
PMID:17498690 GO_REF:0000002 NCBI chr 8:24,913,761...24,919,093
Ensembl chr 8:24,913,758...24,919,098
JBrowse link
neurofilament cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARHGEF28 Rho guanine nucleotide exchange factor 28 ISO (MGI:3619625|PMID:16236762) MGI PMID:16236762 MGI:3619625 NCBI chr 5:73,626,179...73,941,993
Ensembl chr 5:73,626,158...73,941,993
JBrowse link
G ATP8A2 ATPase phospholipid transporting 8A2 IEA Ensembl GO_REF:0000107 NCBI chr13:25,371,974...26,025,851
Ensembl chr13:25,371,974...26,025,851
JBrowse link
G CLN8 CLN8 transmembrane ER and ERGIC protein IEA Ensembl GO_REF:0000107 NCBI chr 8:1,755,778...1,786,570
Ensembl chr 8:1,755,778...1,801,711
JBrowse link
G INA internexin neuronal intermediate filament protein alpha IEA Ensembl GO_REF:0000107 NCBI chr10:103,277,138...103,290,346
Ensembl chr10:103,277,138...103,290,346
JBrowse link
G NDEL1 nudE neurodevelopment protein 1 like 1 IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107 NCBI chr17:8,435,884...8,472,744
Ensembl chr17:8,413,131...8,490,411
JBrowse link
G NEFH neurofilament heavy IEA Ensembl GO_REF:0000107 NCBI chr22:29,480,218...29,491,390
Ensembl chr22:29,480,218...29,491,390
JBrowse link
G NEFL neurofilament light IEA Ensembl GO_REF:0000107 NCBI chr 8:24,950,955...24,956,612
Ensembl chr 8:24,950,955...24,957,110
Ensembl chr 8:24,950,955...24,957,110
JBrowse link
G NEFM neurofilament medium ISO (MGI:1203441|PMID:9566972)
(MGI:1342909|PMID:10461886)
MGI PMID:9566972, PMID:10461886 MGI:1203441, MGI:1342909 NCBI chr 8:24,913,761...24,919,093
Ensembl chr 8:24,913,758...24,919,098
JBrowse link
G SOD1 superoxide dismutase 1 ISS UniProtKB GO_REF:0000024 NCBI chr21:31,659,693...31,668,931
Ensembl chr21:31,659,622...31,668,931
Ensembl chr21:31,659,622...31,668,931
JBrowse link
G VPS54 VPS54 subunit of GARP complex IEA Ensembl GO_REF:0000107 NCBI chr 2:63,892,149...64,019,428
Ensembl chr 2:63,892,146...64,019,428
JBrowse link
positive regulation of intermediate filament depolymerization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NES nestin ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr 1:156,668,763...156,677,407
Ensembl chr 1:156,668,763...156,677,407
JBrowse link
postsynaptic intermediate filament cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G INA internexin neuronal intermediate filament protein alpha IEA GOC GO_REF:0000108 NCBI chr10:103,277,138...103,290,346
Ensembl chr10:103,277,138...103,290,346
JBrowse link
G NEFH neurofilament heavy IEA GOC GO_REF:0000108 NCBI chr22:29,480,218...29,491,390
Ensembl chr22:29,480,218...29,491,390
JBrowse link
G NEFL neurofilament light IEA GOC GO_REF:0000108 NCBI chr 8:24,950,955...24,956,612
Ensembl chr 8:24,950,955...24,957,110
Ensembl chr 8:24,950,955...24,957,110
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18672
    cellular process 17690
      intermediate filament-based process 56
        intermediate filament cytoskeleton organization 55
          intermediate filament organization + 28
          intermediate filament polymerization or depolymerization + 3
          neurofilament cytoskeleton organization 10
          postsynaptic intermediate filament cytoskeleton organization 3
Path 2
Term Annotations click to browse term
  biological_process 18672
    cellular process 17690
      cellular component organization or biogenesis 7148
        cellular component organization 6958
          organelle organization 4355
            cytoskeleton organization 1531
              intermediate filament cytoskeleton organization 55
                intermediate filament organization + 28
                intermediate filament polymerization or depolymerization + 3
                neurofilament cytoskeleton organization 10
                postsynaptic intermediate filament cytoskeleton organization 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.