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ONTOLOGY REPORT - ANNOTATIONS


Term:intermediate filament cytoskeleton organization
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Accession:GO:0045104 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising intermediate filaments and their associated proteins.
Synonyms:exact_synonym: intermediate filament cytoskeleton organisation
 related_synonym: intermediate filament cytoskeleton organization and biogenesis


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intermediate filament cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn3 ataxin 3 ISO MGI GO_REF:0000008, MGI:2154458 NCBI chr12:101,918,901...101,959,121
Ensembl chr12:101,918,901...101,958,246
JBrowse link
G BC024139 cDNA sequence BC024139 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr15:76,119,517...76,126,556
Ensembl chr15:76,119,517...76,126,596
JBrowse link
G Bfsp2 beaded filament structural protein 2, phakinin IMP (MGI:2673300|PMID:15037121) MGI PMID:15037121 MGI:2673300 NCBI chr 9:103,424,924...103,480,405
Ensembl chr 9:103,424,924...103,480,420
JBrowse link
G Csnk1a1 casein kinase 1, alpha 1 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr18:61,554,236...61,590,320
Ensembl chr18:61,555,274...61,590,061
JBrowse link
G Dsp desmoplakin IMP
IBA
(MGI:1327099|PMID:9864371)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:9864371, PMID:21873635 MGI:1327099, MGI:6201960 NCBI chr13:38,151,294...38,198,577
Ensembl chr13:38,151,294...38,198,577
JBrowse link
G Dst dystonin IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 1:33,907,888...34,308,662
Ensembl chr 1:33,908,225...34,308,661
JBrowse link
G Eppk1 epiplakin 1 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr15:76,101,488...76,120,195
Ensembl chr15:76,101,481...76,120,195
JBrowse link
G Evpl envoplakin IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:116,220,559...116,238,165
Ensembl chr11:116,220,559...116,238,077
JBrowse link
G Fam83h family with sequence similarity 83, member H IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:4834177, MGI:6201960 NCBI chr15:76,001,092...76,014,336
Ensembl chr15:76,001,093...76,014,336
JBrowse link
G Ina internexin neuronal intermediate filament protein, alpha IMP (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chr19:47,014,681...47,025,327
Ensembl chr19:47,014,698...47,025,327
JBrowse link
G Krt16 keratin 16 IDA (MGI:2447093|PMID:12445204) MGI PMID:12445204 MGI:2447093 NCBI chr11:100,246,091...100,248,902
Ensembl chr11:100,246,091...100,248,902
JBrowse link
G Krt18 keratin 18 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr15:102,028,216...102,032,026
Ensembl chr15:102,028,180...102,032,027
JBrowse link
G Krt74 keratin 74 ISO (PMID:20346438) UniProtKB PMID:20346438 NCBI chr15:101,754,259...101,763,504
Ensembl chr15:101,754,259...101,763,504
JBrowse link
G Macf1 microtubule-actin crosslinking factor 1 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 4:123,349,633...123,687,802
Ensembl chr 4:123,349,633...123,684,360
JBrowse link
G Nefh neurofilament, heavy polypeptide IMP (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chr11:4,938,754...4,948,064
Ensembl chr11:4,938,754...4,948,064
JBrowse link
G Nefm neurofilament, medium polypeptide IMP (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chr14:68,119,545...68,125,004
Ensembl chr14:68,082,590...68,124,846
JBrowse link
G Plec plectin IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr15:76,170,974...76,231,378
Ensembl chr15:76,170,974...76,232,574
JBrowse link
G Ppl periplakin IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr16:5,086,291...5,132,481
Ensembl chr16:5,086,291...5,132,421
JBrowse link
G Prph peripherin IDA
ISO
(MGI:2653435|PMID:12642616) MGI PMID:12642616 GO_REF:0000096, MGI:2653435, MGI:4417868 NCBI chr15:99,053,579...99,058,978
Ensembl chr15:99,055,174...99,058,978
JBrowse link
G Raf1 v-raf-leukemia viral oncogene 1 IMP (MGI:3612236|PMID:16365167) MGI PMID:16365167 MGI:3612236 NCBI chr 6:115,618,569...115,676,635
Ensembl chr 6:115,618,067...115,676,635
JBrowse link
G Synm synemin, intermediate filament protein IEA UniProt GO_REF:0000002, MGI:2152098 NCBI chr 7:67,730,161...67,759,742
Ensembl chr 7:67,730,160...67,759,742
JBrowse link
G Tor1a torsin family 1, member A (torsin A) ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 2:30,960,561...30,967,918
Ensembl chr 2:30,960,627...30,967,933
JBrowse link
intermediate filament bundle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eppk1 epiplakin 1 IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:5816446|PMID:20926261)
GO_Central
UniProt
PMID:20926261, PMID:21873635 MGI:5816446, MGI:6201960 NCBI chr15:76,101,488...76,120,195
Ensembl chr15:76,101,481...76,120,195
JBrowse link
G Krt14 keratin 14 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr11:100,203,162...100,207,510
Ensembl chr11:100,203,162...100,207,548
JBrowse link
G Nefh neurofilament, heavy polypeptide ISO
IGI
(MGI:1342909|PMID:10461886) MGI PMID:10461886 GO_REF:0000096, MGI:1342909, MGI:4417868 NCBI chr11:4,938,754...4,948,064
Ensembl chr11:4,938,754...4,948,064
JBrowse link
G Nefl neurofilament, light polypeptide IGI (MGI:5553249|PMID:11034913)
(MGI:1342909|PMID:10461886)
BHF-UCL
MGI
PMID:10461886, PMID:11034913 MGI:1342909, MGI:5553249 NCBI chr14:68,083,863...68,089,095
Ensembl chr14:68,083,863...68,089,095
JBrowse link
G Nefm neurofilament, medium polypeptide IGI (MGI:1342909|PMID:10461886) MGI PMID:10461886 MGI:1342909 NCBI chr14:68,119,545...68,125,004
Ensembl chr14:68,082,590...68,124,846
JBrowse link
G Pkp1 plakophilin 1 IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:4834177, MGI:6201960 NCBI chr 1:135,871,394...135,919,207
Ensembl chr 1:135,871,395...135,919,207
JBrowse link
G Pkp2 plakophilin 2 IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:4834177, MGI:6201960 NCBI chr16:16,213,345...16,272,712
Ensembl chr16:16,213,318...16,272,712
JBrowse link
intermediate filament organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agfg1 ArfGAP with FG repeats 1 IMP (MGI:3040020|PMID:14724135) MGI PMID:14724135 MGI:3040020 NCBI chr 1:82,839,017...82,901,001
Ensembl chr 1:82,839,483...82,901,182
JBrowse link
G Bfsp1 beaded filament structural protein 1, in lens-CP94 IMP (MGI:6414994|PMID:27559293) UniProt PMID:27559293 MGI:6414994 NCBI chr 2:143,826,528...143,915,219
Ensembl chr 2:143,826,528...143,863,173
JBrowse link
G Bfsp2 beaded filament structural protein 2, phakinin IMP (MGI:6414994|PMID:27559293) UniProt PMID:27559293 MGI:6414994 NCBI chr 9:103,424,924...103,480,405
Ensembl chr 9:103,424,924...103,480,420
JBrowse link
G Des desmin ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 1:75,360,292...75,368,579
Ensembl chr 1:75,360,329...75,368,579
JBrowse link
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 5:29,735,898...29,786,478
Ensembl chr 5:29,735,688...29,818,134
JBrowse link
G Dreh down-regulated in hepatocellular carcinoma IMP (MGI:5446619|PMID:23239537) MGI PMID:23239537 MGI:5446619 NCBI chr17:64,767,111...64,767,931
Ensembl chr17:64,767,111...64,767,931
JBrowse link
G Dsp desmoplakin IMP (MGI:3723417|PMID:16917092) BHF-UCL PMID:16917092 MGI:3723417 NCBI chr13:38,151,294...38,198,577
Ensembl chr13:38,151,294...38,198,577
JBrowse link
G Eppk1 epiplakin 1 IDA
ISO
IMP
(MGI:5805359|PMID:25617501)
(MGI:3805230|PMID:18285451)
UniProt
MGI
PMID:18285451, PMID:25617501 GO_REF:0000096, MGI:3805230, MGI:4834177, MGI:5805359 NCBI chr15:76,101,488...76,120,195
Ensembl chr15:76,101,481...76,120,195
JBrowse link
G Flg filaggrin IDA (MGI:5521493|PMID:6170061) MGI PMID:6170061 MGI:5521493 NCBI chr 3:93,273,546...93,293,689
Ensembl chr 3:93,273,523...93,293,686
JBrowse link
G Gfap glial fibrillary acidic protein IGI
IMP
ISO
(MGI:3719550|PMID:11487638)
(MGI:1889059|PMID:8692820)
MGI PMID:8692820, PMID:11487638 GO_REF:0000096, MGI:1889059, MGI:3719550, MGI:4834177 NCBI chr11:102,887,336...102,897,200
Ensembl chr11:102,887,336...102,900,912
JBrowse link
G Klhl24 kelch-like 24 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr16:20,097,553...20,129,226
Ensembl chr16:20,097,542...20,129,221
JBrowse link
G Krt10 keratin 10 IGI (MGI:5603985|PMID:24751727) MGI PMID:24751727 MGI:5603985 NCBI chr11:99,385,254...99,397,449
Ensembl chr11:99,385,254...99,389,364
JBrowse link
G Krt17 keratin 17 IGI (MGI:3525934|PMID:15601842) MGI PMID:15601842 MGI:3525934 NCBI chr11:100,256,215...100,261,029
Ensembl chr11:100,256,217...100,261,029
JBrowse link
G Krt2 keratin 2 IMP (MGI:5603985|PMID:24751727) MGI PMID:24751727 MGI:5603985 NCBI chr15:101,810,689...101,818,956
Ensembl chr15:101,810,689...101,818,169
JBrowse link
G Krt20 keratin 20 ISO
IMP
(MGI:3759340|PMID:12857878) MGI
UniProt
PMID:12857878 GO_REF:0000096, MGI:3759340, MGI:4834177 NCBI chr11:99,428,385...99,438,153
Ensembl chr11:99,428,403...99,438,150
JBrowse link
G Krt25 keratin 25 IMP (MGI:3770737|PMID:17920809) MGI PMID:17920809 MGI:3770737 NCBI chr11:99,315,516...99,322,951
Ensembl chr11:99,315,516...99,322,951
JBrowse link
G Krt6a keratin 6A IGI (MGI:3525934|PMID:15601842) MGI PMID:15601842 MGI:3525934 NCBI chr15:101,689,928...101,694,305
Ensembl chr15:101,689,910...101,694,307
JBrowse link
G Krt6b keratin 6B IGI (MGI:3525934|PMID:15601842) MGI PMID:15601842 MGI:3525934 NCBI chr15:101,676,023...101,680,293
Ensembl chr15:101,676,023...101,680,287
JBrowse link
G Krt71 keratin 71 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr15:101,733,949...101,743,097
Ensembl chr15:101,733,949...101,743,109
JBrowse link
G Krt9 keratin 9 ISO (PMID:10218578) UniProtKB PMID:10218578 NCBI chr11:100,186,781...100,193,246
Ensembl chr11:100,186,781...100,193,246
JBrowse link
G Mtm1 X-linked myotubular myopathy gene 1 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr  X:71,210,767...71,315,413
Ensembl chr  X:71,210,767...71,315,691
JBrowse link
G Nefl neurofilament, light polypeptide IMP
ISO
(MGI:1096547|PMID:7946341), (MGI:2182115|PMID:2121744) MGI PMID:2121744, PMID:7946341 GO_REF:0000096, MGI:1096547, MGI:2182115, MGI:4834177 NCBI chr14:68,083,863...68,089,095
Ensembl chr14:68,083,863...68,089,095
JBrowse link
G Shh sonic hedgehog IMP (MGI:1929969|PMID:11171399) MGI PMID:11171399 MGI:1929969 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
G Tchh trichohyalin IDA
IBA
(MGI:2678962|PMID:12853460)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:12853460, PMID:21873635 MGI:2678962, MGI:6201960 NCBI chr 3:93,442,330...93,449,077
Ensembl chr 3:93,442,330...93,449,077
JBrowse link
G Vim vimentin IGI
IMP
(MGI:3719550|PMID:11487638)
(MGI:6414994|PMID:27559293)
MGI
UniProt
PMID:11487638, PMID:27559293 MGI:3719550, MGI:6414994 NCBI chr 2:13,574,311...13,582,826
Ensembl chr 2:13,573,927...13,582,826
JBrowse link
intermediate filament polymerization or depolymerization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nefl neurofilament, light polypeptide ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr14:68,083,863...68,089,095
Ensembl chr14:68,083,863...68,089,095
JBrowse link
G Nefm neurofilament, medium polypeptide ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr14:68,119,545...68,125,004
Ensembl chr14:68,082,590...68,124,846
JBrowse link
neurofilament bundle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nefh neurofilament, heavy polypeptide ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr11:4,938,754...4,948,064
Ensembl chr11:4,938,754...4,948,064
JBrowse link
G Nefl neurofilament, light polypeptide ISO MGI GO_REF:0000096, MGI:4417868, MGI:4834177 NCBI chr14:68,083,863...68,089,095
Ensembl chr14:68,083,863...68,089,095
JBrowse link
G Nefm neurofilament, medium polypeptide ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr14:68,119,545...68,125,004
Ensembl chr14:68,082,590...68,124,846
JBrowse link
neurofilament cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef28 Rho guanine nucleotide exchange factor (GEF) 28 IMP (MGI:3619625|PMID:16236762) MGI PMID:16236762 MGI:3619625 NCBI chr13:97,898,594...98,206,675
Ensembl chr13:97,899,469...98,206,439
JBrowse link
G Atp8a2 ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 IMP (MGI:5439211|PMID:22912588) UniProt PMID:22912588 MGI:5439211 NCBI chr14:59,647,531...60,086,914
Ensembl chr14:59,638,540...60,197,179
JBrowse link
G Cln8 CLN8 transmembrane ER and ERGIC protein IMP (MGI:3709684|PMID:2061715) MGI PMID:2061715 MGI:3709684 NCBI chr 8:14,881,335...14,901,720
Ensembl chr 8:14,881,335...14,901,720
JBrowse link
G Ina internexin neuronal intermediate filament protein, alpha IGI (MGI:1339419|PMID:10350642) MGI PMID:10350642 MGI:1339419 NCBI chr19:47,014,681...47,025,327
Ensembl chr19:47,014,698...47,025,327
JBrowse link
G Ndel1 nudE neurodevelopment protein 1 like 1 IMP (MGI:3047464|PMID:15208636) MGI PMID:15208636 MGI:3047464 NCBI chr11:68,821,434...68,853,146
Ensembl chr11:68,821,434...68,871,858
JBrowse link
G Nefh neurofilament, heavy polypeptide IMP
IGI
(MGI:4836441|PMID:20633607)
(MGI:1342909|PMID:10461886)
MGI PMID:10461886, PMID:20633607 MGI:1342909, MGI:4836441 NCBI chr11:4,938,754...4,948,064
Ensembl chr11:4,938,754...4,948,064
JBrowse link
G Nefl neurofilament, light polypeptide IMP
IGI
(MGI:1100197|PMID:9398473), (MGI:1347434|PMID:15132161), (MGI:2148377|PMID:11487626), (MGI:2679157|PMID:14561875), (MGI:3664358|PMID:16920084)
(MGI:1339419|PMID:10350642)
(MGI:1934092|PMID:11343650)
(MGI:1342909|PMID:10461886)
MGI PMID:9398473, PMID:10350642, PMID:10461886, PMID:11343650, PMID:11487626, PMID:14561875, PMID:15132161, PMID:16920084 MGI:1100197, MGI:1339419, MGI:1342909, MGI:1347434, MGI:1934092, MGI:2148377, MGI:2679157, MGI:3664358 NCBI chr14:68,083,863...68,089,095
Ensembl chr14:68,083,863...68,089,095
JBrowse link
G Nefm neurofilament, medium polypeptide IMP
IGI
(MGI:1203441|PMID:9566972)
(MGI:1342909|PMID:10461886)
MGI PMID:9566972, PMID:10461886 MGI:1203441, MGI:1342909 NCBI chr14:68,119,545...68,125,004
Ensembl chr14:68,082,590...68,124,846
JBrowse link
G Sod1 superoxide dismutase 1, soluble IMP
IGI
(MGI:1934092|PMID:11343650) MGI PMID:11343650 MGI:1934092 NCBI chr16:90,220,762...90,226,333
Ensembl chr16:90,220,754...90,226,329
JBrowse link
G Vps54 VPS54 GARP complex subunit IMP (MGI:2149279|PMID:11493023) MGI PMID:11493023 MGI:2149279 NCBI chr11:21,239,032...21,321,133
Ensembl chr11:21,239,281...21,321,136
JBrowse link
positive regulation of intermediate filament depolymerization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nes nestin IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 3:87,971,093...87,980,451
Ensembl chr 3:87,971,078...87,980,451
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23386
    cellular process 17420
      intermediate filament-based process 55
        intermediate filament cytoskeleton organization 54
          intermediate filament organization + 30
          intermediate filament polymerization or depolymerization + 3
          neurofilament cytoskeleton organization 10
          postsynaptic intermediate filament cytoskeleton organization 0
Path 2
Term Annotations click to browse term
  biological_process 23386
    cellular process 17420
      cellular component organization or biogenesis 6413
        cellular component organization 6225
          organelle organization 3856
            cytoskeleton organization 1416
              intermediate filament cytoskeleton organization 54
                intermediate filament organization + 30
                intermediate filament polymerization or depolymerization + 3
                neurofilament cytoskeleton organization 10
                postsynaptic intermediate filament cytoskeleton organization 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.