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ONTOLOGY REPORT - ANNOTATIONS


Term:intermediate filament cytoskeleton organization
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Accession:GO:0045104 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising intermediate filaments and their associated proteins.
Synonyms:exact_synonym: intermediate filament cytoskeleton organisation
 related_synonym: intermediate filament cytoskeleton organization and biogenesis


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intermediate filament cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATXN3 ataxin 3 IEA Ensembl GO_REF:0000107 NCBI chr 7:113,611,566...113,645,835 JBrowse link
G BFSP2 beaded filament structural protein 2 ISO (MGI:2673300|PMID:15037121) MGI PMID:15037121 MGI:2673300 NCBI chr13:74,557,878...74,639,459
Ensembl chr13:74,557,930...74,639,455
JBrowse link
G CSNK1A1 casein kinase 1 alpha 1 ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr 2:150,612,845...150,662,431
Ensembl chr 2:150,612,844...150,662,351
JBrowse link
G DSP desmoplakin IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 7:4,862,649...4,915,626
Ensembl chr 7:4,862,649...4,915,615
JBrowse link
G DST dystonin IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 7:28,812,423...29,300,149
Ensembl chr 7:28,812,334...29,300,153
JBrowse link
G EVPL envoplakin IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr12:5,409,456...5,426,433
Ensembl chr12:5,409,577...5,426,435
JBrowse link
G FAM83H family with sequence similarity 83 member H IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:887,472...907,523
Ensembl chr 4:891,988...907,522
JBrowse link
G INA internexin neuronal intermediate filament protein alpha ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chr14:114,227,998...114,240,566
Ensembl chr14:114,227,993...114,240,560
JBrowse link
G KRT18 keratin 18 IEA Ensembl GO_REF:0000107 NCBI chr 5:18,217,686...18,221,432
Ensembl chr 5:18,217,691...18,222,833
JBrowse link
G KRT3 keratin 3 IEA Ensembl GO_REF:0000107 NCBI chr 5:18,075,881...18,082,119
Ensembl chr 5:18,075,860...18,082,196
JBrowse link
G KRT74 keratin 74 IEA Ensembl GO_REF:0000107 NCBI chr 5:17,914,911...17,924,004
Ensembl chr 5:17,914,912...17,924,004
JBrowse link
G MACF1 microtubule actin crosslinking factor 1 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 6:94,960,385...95,318,126
Ensembl chr 6:94,960,457...95,317,145
JBrowse link
G NEFH neurofilament heavy ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chr14:46,559,698...46,568,686
Ensembl chr14:46,559,860...46,569,910
JBrowse link
G NEFM neurofilament medium ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chr14:8,955,346...8,967,211 JBrowse link
G PLEC plectin IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 4:696,355...753,859
Ensembl chr 4:685,456...753,859
JBrowse link
G PPL periplakin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:37,460,487...37,511,879
Ensembl chr 3:37,460,502...37,511,876
JBrowse link
G PRPH peripherin IEA InterPro GO_REF:0000002 NCBI chr 5:15,283,399...15,288,800
Ensembl chr 5:15,285,294...15,288,804
JBrowse link
G RAF1 Raf-1 proto-oncogene, serine/threonine kinase IEA Ensembl GO_REF:0000107 NCBI chr13:68,581,128...68,657,911
Ensembl chr13:68,580,812...68,657,829
JBrowse link
G TOR1A torsin family 1 member A IEA Ensembl GO_REF:0000107 NCBI chr 1:269,975,919...269,985,478
Ensembl chr 1:269,974,892...269,985,508
JBrowse link
intermediate filament bundle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPPK1 epiplakin 1 ISO (MGI:5816446|PMID:20926261) UniProt PMID:20926261 MGI:5816446 NCBI chr 4:780,276...798,760 JBrowse link
G LOC100737030 keratin, type I cytoskeletal 42 ISO (PMID:11724817) UniProtKB PMID:11724817 NCBI chr12:21,014,182...21,022,123 JBrowse link
G MACF1 microtubule actin crosslinking factor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:94,960,385...95,318,126
Ensembl chr 6:94,960,457...95,317,145
JBrowse link
G NEFH neurofilament heavy ISO PMID:11034913
(MGI:1342909|PMID:10461886)
BHF-UCL
MGI
PMID:10461886, PMID:11034913 MGI:1342909, RGD:8554743 NCBI chr14:46,559,698...46,568,686
Ensembl chr14:46,559,860...46,569,910
JBrowse link
G NEFL neurofilament light ISO (MGI:1342909|PMID:10461886)
(MGI:5553249|PMID:11034913)
MGI
BHF-UCL
PMID:10461886, PMID:11034913 MGI:1342909, MGI:5553249 NCBI chr14:8,991,321...8,996,900
Ensembl chr14:8,990,750...8,997,300
JBrowse link
G NEFM neurofilament medium ISO (MGI:1342909|PMID:10461886) MGI PMID:10461886 MGI:1342909 NCBI chr14:8,955,346...8,967,211 JBrowse link
G PKP1 plakophilin 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:23,689,394...23,735,457
Ensembl chr10:23,689,380...23,735,453
JBrowse link
G PKP2 plakophilin 2 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 5:41,424,687...41,509,590
Ensembl chr 5:41,424,845...41,508,868
JBrowse link
intermediate filament organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGFG1 ArfGAP with FG repeats 1 IEA Ensembl GO_REF:0000107 NCBI chr15:128,898,806...128,980,782
Ensembl chr15:128,898,621...128,975,520
JBrowse link
G BFSP1 beaded filament structural protein 1 IEA Ensembl GO_REF:0000107 NCBI chr17:25,933,743...25,966,940
Ensembl chr17:25,933,900...25,966,843
JBrowse link
G BFSP2 beaded filament structural protein 2 IEA Ensembl GO_REF:0000107 NCBI chr13:74,557,878...74,639,459
Ensembl chr13:74,557,930...74,639,455
JBrowse link
G DES desmin ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr15:121,428,539...121,435,426
Ensembl chr15:121,427,103...121,435,424
JBrowse link
G DNAJB6 DnaJ heat shock protein family (Hsp40) member B6 IEA Ensembl GO_REF:0000107 NCBI chr18:1,444,737...1,499,904
Ensembl chr18:1,444,737...1,630,889
JBrowse link
G DSP desmoplakin IEA Ensembl GO_REF:0000107 NCBI chr 7:4,862,649...4,915,626
Ensembl chr 7:4,862,649...4,915,615
JBrowse link
G EPPK1 epiplakin 1 ISO (PMID:23398049)
(MGI:5805359|PMID:25617501)
(MGI:3805230|PMID:18285451)
(PMID:15671067)
UniProtKB
UniProt
PMID:15671067, PMID:18285451, PMID:23398049, PMID:25617501 MGI:3805230, MGI:5805359 NCBI chr 4:780,276...798,760 JBrowse link
G GFAP glial fibrillary acidic protein IEA Ensembl GO_REF:0000107 NCBI chr12:18,456,268...18,466,594
Ensembl chr12:18,456,263...18,468,898
JBrowse link
G KLHL24 kelch like family member 24 IEA Ensembl GO_REF:0000107 NCBI chr13:121,564,833...121,608,146
Ensembl chr13:121,564,884...121,608,148
JBrowse link
G KRT10 keratin 10 ISO (MGI:5603985|PMID:24751727) MGI PMID:24751727 MGI:5603985 NCBI chr12:21,641,263...21,645,642
Ensembl chr12:21,641,271...21,645,636
JBrowse link
G KRT2 keratin 2 IEA Ensembl GO_REF:0000107 NCBI chr 5:17,984,316...17,992,092
Ensembl chr 5:17,984,316...17,992,092
JBrowse link
G KRT20 keratin 20 IEA
ISS
Ensembl
UniProt
GO_REF:0000024, GO_REF:0000107 NCBI chr12:21,584,683...21,593,583
Ensembl chr12:21,584,814...21,594,854
JBrowse link
G KRT25 keratin 25 IEA Ensembl GO_REF:0000107 NCBI chr12:21,703,369...21,709,923
Ensembl chr12:21,703,363...21,709,922
JBrowse link
G LOC106506651 keratin, type II cytoskeletal 71 IEA Ensembl GO_REF:0000107 NCBI chr 5:17,895,714...17,905,194
Ensembl chr 5:17,895,718...17,905,181
JBrowse link
G MTM1 myotubularin 1 IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107 NCBI chr  X:122,286,904...122,379,302
Ensembl chr  X:122,286,916...122,379,299
JBrowse link
G NEFL neurofilament light ISS UniProt GO_REF:0000024 NCBI chr14:8,991,321...8,996,900
Ensembl chr14:8,990,750...8,997,300
JBrowse link
G SHH sonic hedgehog signaling molecule IEA Ensembl GO_REF:0000107 NCBI chr18:2,546,202...2,555,484
Ensembl chr18:2,545,718...2,555,484
JBrowse link
G TCHH trichohyalin ISO (MGI:2678962|PMID:12853460) MGI PMID:12853460 MGI:2678962 NCBI chr 4:97,159,720...97,168,260 JBrowse link
G VIM vimentin ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr10:43,516,441...43,526,172
Ensembl chr10:43,517,307...43,526,172
JBrowse link
intermediate filament polymerization or depolymerization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NEFL neurofilament light ISO RGD PMID:10362553 RGD:9698446 NCBI chr14:8,991,321...8,996,900
Ensembl chr14:8,990,750...8,997,300
JBrowse link
G NEFM neurofilament medium ISO RGD PMID:10362553 RGD:9698446 NCBI chr14:8,955,346...8,967,211 JBrowse link
neurofilament bundle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NEFH neurofilament heavy IEA Ensembl GO_REF:0000107 NCBI chr14:46,559,698...46,568,686
Ensembl chr14:46,559,860...46,569,910
JBrowse link
G NEFL neurofilament light ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr14:8,991,321...8,996,900
Ensembl chr14:8,990,750...8,997,300
JBrowse link
G NEFM neurofilament medium IEA InterPro GO_REF:0000002 NCBI chr14:8,955,346...8,967,211 JBrowse link
neurofilament cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARHGEF28 Rho guanine nucleotide exchange factor 28 ISO (MGI:3619625|PMID:16236762) MGI PMID:16236762 MGI:3619625 NCBI chr 2:82,760,754...83,102,126
Ensembl chr 2:82,761,355...83,102,123
JBrowse link
G CLN8 CLN8 transmembrane ER and ERGIC protein IEA Ensembl GO_REF:0000107 NCBI chr15:33,282,524...33,325,598 JBrowse link
G INA internexin neuronal intermediate filament protein alpha IEA Ensembl GO_REF:0000107 NCBI chr14:114,227,998...114,240,566
Ensembl chr14:114,227,993...114,240,560
JBrowse link
G LOC100523747 phospholipid-transporting ATPase IB IEA Ensembl GO_REF:0000107 NCBI chr11:3,277,395...3,793,881
Ensembl chr11:3,278,071...3,793,881
JBrowse link
G NDEL1 nudE neurodevelopment protein 1 like 1 IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr12:53,553,897...53,640,470
Ensembl chr12:53,547,009...53,642,406
JBrowse link
G NEFH neurofilament heavy IEA Ensembl GO_REF:0000107 NCBI chr14:46,559,698...46,568,686
Ensembl chr14:46,559,860...46,569,910
JBrowse link
G NEFL neurofilament light IEA Ensembl GO_REF:0000107 NCBI chr14:8,991,321...8,996,900
Ensembl chr14:8,990,750...8,997,300
JBrowse link
G NEFM neurofilament medium ISO (MGI:1203441|PMID:9566972)
(MGI:1342909|PMID:10461886)
MGI PMID:9566972, PMID:10461886 MGI:1203441, MGI:1342909 NCBI chr14:8,955,346...8,967,211 JBrowse link
G SOD1 superoxide dismutase 1 IEA Ensembl GO_REF:0000107 NCBI chr13:195,326,573...195,335,273
Ensembl chr13:195,326,649...195,337,749
JBrowse link
G VPS54 VPS54 subunit of GARP complex IEA Ensembl GO_REF:0000107 NCBI chr 3:77,856,093...77,978,194
Ensembl chr 3:77,856,138...77,975,439
JBrowse link
positive regulation of intermediate filament depolymerization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NES nestin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:93,412,660...93,421,899
Ensembl chr 4:93,412,557...93,421,895
JBrowse link
postsynaptic intermediate filament cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G INA internexin neuronal intermediate filament protein alpha IEA GOC GO_REF:0000108 NCBI chr14:114,227,998...114,240,566
Ensembl chr14:114,227,993...114,240,560
JBrowse link
G NEFH neurofilament heavy IEA GOC GO_REF:0000108 NCBI chr14:46,559,698...46,568,686
Ensembl chr14:46,559,860...46,569,910
JBrowse link
G NEFL neurofilament light IEA GOC GO_REF:0000108 NCBI chr14:8,991,321...8,996,900
Ensembl chr14:8,990,750...8,997,300
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16548
    cellular process 15780
      intermediate filament-based process 47
        intermediate filament cytoskeleton organization 46
          intermediate filament organization + 25
          intermediate filament polymerization or depolymerization + 3
          neurofilament cytoskeleton organization 10
          postsynaptic intermediate filament cytoskeleton organization 3
Path 2
Term Annotations click to browse term
  biological_process 16548
    cellular process 15780
      cellular component organization or biogenesis 5992
        cellular component organization 5824
          organelle organization 3676
            cytoskeleton organization 1363
              intermediate filament cytoskeleton organization 46
                intermediate filament organization + 25
                intermediate filament polymerization or depolymerization + 3
                neurofilament cytoskeleton organization 10
                postsynaptic intermediate filament cytoskeleton organization 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.