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ONTOLOGY REPORT - ANNOTATIONS


Term:intermediate filament cytoskeleton organization
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Accession:GO:0045104 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising intermediate filaments and their associated proteins.
Synonyms:exact_synonym: intermediate filament cytoskeleton organisation
 related_synonym: intermediate filament cytoskeleton organization and biogenesis


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intermediate filament cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn3 ataxin 3 ISO
ISS
(PMID:20637808)
GO_REF:0000024
RGD
ParkinsonsUK-UCL
PMID:20637808 GO_REF:0000024 NCBI chr 6:125,817,420...125,853,461
Ensembl chr 6:125,819,640...125,853,461
JBrowse link
G Bfsp2 beaded filament structural protein 2 ISO MGI:2671074 (MGI:2673300|PMID:15037121) RGD PMID:15037121 MGI:2673300 NCBI chr 8:111,908,614...111,965,889
Ensembl chr 8:111,908,614...111,965,889
JBrowse link
G Csnk1a1 casein kinase 1, alpha 1 ISO
IEA
ISS
(PMID:23902688)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:23902688 GO_REF:0000024, GO_REF:0000107 NCBI chr18:56,887,722...56,910,610
Ensembl chr18:56,887,354...56,918,345
JBrowse link
G Dsp desmoplakin IBA
ISO
PMID:21873635
MGI:2182575 (MGI:1327099|PMID:9864371)
RGD PMID:9864371, PMID:21873635 MGI:1327099, RGD:13792537 NCBI chr17:27,286,811...27,334,453
Ensembl chr17:27,286,796...27,334,379
JBrowse link
G Dst dystonin ISO
IBA
(PMID:11751855)
PMID:21873635
RGD PMID:11751855, PMID:21873635 RGD:13792537 NCBI chr 9:37,902,336...38,296,961
Ensembl chr 9:37,902,303...38,196,273
JBrowse link
G Evpl envoplakin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:105,100,538...105,116,802
Ensembl chr10:105,100,336...105,116,916
JBrowse link
G Fam83h family with sequence similarity 83, member H ISO
IBA
(PMID:23902688)
PMID:21873635
RGD PMID:23902688, PMID:21873635 RGD:13792537 NCBI chr 7:117,062,748...117,070,936
Ensembl chr 7:117,062,692...117,070,936
JBrowse link
G Ina internexin neuronal intermediate filament protein, alpha ISO (MGI:2679157|PMID:14561875) RGD PMID:14561875 MGI:2679157 NCBI chr 1:266,782,835...266,794,389
Ensembl chr 1:266,781,617...266,794,431
JBrowse link
G Kb15 type II keratin Kb15 ISO (PMID:23662636) RGD PMID:23662636 NCBI chr 7:143,208,034...143,217,771
Ensembl chr 7:143,208,527...143,217,535
JBrowse link
G Krt16 keratin 16 ISO (MGI:2447093|PMID:12445204) RGD PMID:12445204 MGI:2447093 NCBI chr10:88,149,210...88,152,167
Ensembl chr10:88,149,345...88,152,064
JBrowse link
G Krt18 keratin 18 ISO (PMID:20346438) RGD PMID:20346438 NCBI chr 7:143,629,455...143,633,131
Ensembl chr 7:143,629,455...143,633,131
JBrowse link
G LOC680875 similar to dystonin isoform 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:117,180,653...117,187,739
Ensembl chr 7:117,180,812...117,187,367
JBrowse link
G Macf1 microtubule-actin crosslinking factor 1 IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 5:141,039,455...141,363,524
Ensembl chr 5:141,039,468...141,363,524
JBrowse link
G Nefh neurofilament heavy ISO MGI:2183246 (MGI:2679157|PMID:14561875) RGD PMID:14561875 MGI:2679157 NCBI chr14:85,181,572...85,191,557
Ensembl chr14:85,181,572...85,191,557
JBrowse link
G Nefm neurofilament medium ISO MGI:2180135 (MGI:2679157|PMID:14561875) RGD PMID:14561875 MGI:2679157 NCBI chr15:44,855,307...44,860,604
Ensembl chr15:44,855,310...44,860,604
JBrowse link
G Plec plectin IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 7:117,230,319...117,291,859
Ensembl chr 7:117,230,319...117,289,961
JBrowse link
G Ppl periplakin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:10,644,572...10,690,223
Ensembl chr10:10,644,572...10,690,223
JBrowse link
G Prph peripherin IMP
ISO
IEA
(MGI:2653435|PMID:12642616)
GO_REF:0000002
RGD
InterPro
PMID:12642616, PMID:8575457 GO_REF:0000002, MGI:2653435, RGD:633740 NCBI chr 7:140,742,406...140,746,197
Ensembl chr 7:140,742,418...140,746,197
JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase ISO MGI:2388026 (MGI:3612236|PMID:16365167) RGD PMID:16365167 MGI:3612236 NCBI chr 4:147,532,040...147,592,769
Ensembl chr 4:147,532,042...147,592,699
JBrowse link
G Synm synemin IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:128,692,112...128,722,048
Ensembl chr 1:128,692,112...128,722,048
JBrowse link
G Tor1a torsin family 1, member A ISO
ISS
(PMID:16361107)
GO_REF:0000024
RGD
UniProt
PMID:16361107 GO_REF:0000024 NCBI chr 3:9,800,322...9,807,318
Ensembl chr 3:9,800,322...9,807,328
JBrowse link
intermediate filament bundle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07034767.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr11:88,912,599...88,972,176 JBrowse link
G Eppk1 epiplakin 1 ISO (MGI:5816446|PMID:20926261) RGD PMID:20926261 MGI:5816446 NCBI chr 7:117,163,383...117,173,741 JBrowse link
G Krt14 keratin 14 ISO
ISS
(PMID:11724817)
GO_REF:0000024
RGD
UniProt
PMID:11724817 GO_REF:0000024 NCBI chr10:88,118,029...88,122,233
Ensembl chr10:88,055,823...88,122,233
JBrowse link
G Nefh neurofilament heavy IGI
ISO
PMID:11034913
MGI:97313|MGI:97314 (MGI:1342909|PMID:10461886)
RGD PMID:10461886, PMID:11034913 MGI:1342909, RGD:8554743 NCBI chr14:85,181,572...85,191,557
Ensembl chr14:85,181,572...85,191,557
JBrowse link
G Nefl neurofilament light ISO MGI:97309|MGI:97314|UniProtKB:P16884 (MGI:1342909|PMID:10461886), (MGI:5553249|PMID:11034913) RGD PMID:10461886, PMID:11034913 MGI:1342909, MGI:5553249 NCBI chr15:44,799,378...44,803,251
Ensembl chr15:44,799,334...44,804,574
JBrowse link
G Nefm neurofilament medium ISO MGI:97309|MGI:97313 (MGI:1342909|PMID:10461886) RGD PMID:10461886 MGI:1342909 NCBI chr15:44,855,307...44,860,604
Ensembl chr15:44,855,310...44,860,604
JBrowse link
G Pkp1 plakophilin 1 ISO
IBA
(PMID:10852826)
PMID:21873635
RGD PMID:10852826, PMID:21873635 RGD:13792537 NCBI chr13:52,705,174...52,753,089
Ensembl chr13:52,705,174...52,752,997
JBrowse link
G Pkp2 plakophilin 2 ISO (PMID:18474624) RGD PMID:18474624 NCBI chr11:88,912,163...88,972,213 JBrowse link
intermediate filament organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agfg1 ArfGAP with FG repeats 1 IEA
ISO
GO_REF:0000107
MGI:2182772 (MGI:3040020|PMID:14724135)
Ensembl
RGD
PMID:14724135 GO_REF:0000107, MGI:3040020 NCBI chr 9:88,607,508...88,663,486
Ensembl chr 9:88,607,508...88,662,224
JBrowse link
G Bfsp1 beaded filament structural protein 1 ISS
ISO
IEA
GO_REF:0000024
(MGI:6414994|PMID:27559293)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:27559293 GO_REF:0000024, GO_REF:0000107, MGI:6414994 NCBI chr 3:137,935,345...137,992,652
Ensembl chr 3:137,935,345...137,969,658
JBrowse link
G Bfsp2 beaded filament structural protein 2 ISS
ISO
GO_REF:0000024
(MGI:6414994|PMID:27559293)
UniProt
RGD
PMID:27559293 GO_REF:0000024, MGI:6414994 NCBI chr 8:111,908,614...111,965,889
Ensembl chr 8:111,908,614...111,965,889
JBrowse link
G Des desmin IEA
ISO
ISS
GO_REF:0000107
(PMID:24200904), (PMID:26724190)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:24200904, PMID:26724190 GO_REF:0000024, GO_REF:0000107 NCBI chr 9:82,556,574...82,564,288
Ensembl chr 9:82,556,573...82,564,294
JBrowse link
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 ISO (PMID:10954706) RGD PMID:10954706 NCBI chr 4:2,711,329...2,774,969
Ensembl chr 4:2,711,385...2,774,890
JBrowse link
G Dsp desmoplakin ISO (MGI:3723417|PMID:16917092) RGD PMID:16917092 MGI:3723417 NCBI chr17:27,286,811...27,334,453
Ensembl chr17:27,286,796...27,334,379
JBrowse link
G Eppk1 epiplakin 1 ISO (PMID:15671067), (PMID:23398049)
(MGI:3805230|PMID:18285451), (MGI:5805359|PMID:25617501)
RGD PMID:15671067, PMID:18285451, PMID:23398049, PMID:25617501 MGI:3805230, MGI:5805359 NCBI chr 7:117,163,383...117,173,741 JBrowse link
G Flg filaggrin ISO (MGI:5521493|PMID:6170061) RGD PMID:6170061 MGI:5521493 NCBI chr 2:193,565,401...193,574,297 JBrowse link
G Gfap glial fibrillary acidic protein ISO
ISS
(PMID:15732097)
MGI:1857176|MGI:98932 (MGI:1889059|PMID:8692820), (MGI:3719550|PMID:11487638)
GO_REF:0000024
RGD
UniProt
PMID:8692820, PMID:11487638, PMID:15732097 GO_REF:0000024, MGI:1889059, MGI:3719550 NCBI chr10:90,990,762...90,999,435
Ensembl chr10:90,990,762...90,999,506
JBrowse link
G Kb15 type II keratin Kb15 ISO MGI:1333768|MGI:96691 (MGI:3525934|PMID:15601842) RGD PMID:15601842 MGI:3525934 NCBI chr 7:143,208,034...143,217,771
Ensembl chr 7:143,208,527...143,217,535
JBrowse link
G Klhl24 kelch-like family member 24 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:27889062)
Ensembl
UniProt
RGD
PMID:27889062 GO_REF:0000024, GO_REF:0000107 NCBI chr11:84,613,101...84,643,674
Ensembl chr11:84,615,760...84,633,504
JBrowse link
G Krt10 keratin 10 ISO MGI:96699 (MGI:5603985|PMID:24751727) RGD PMID:24751727 MGI:5603985 NCBI chr10:87,296,445...87,301,307
Ensembl chr10:87,296,451...87,300,736
JBrowse link
G Krt17 keratin 17 ISO MGI:1100845|MGI:1333768 (MGI:3525934|PMID:15601842) RGD PMID:15601842 MGI:3525934 NCBI chr10:88,158,993...88,163,712
Ensembl chr10:88,118,001...88,163,723
JBrowse link
G Krt2 keratin 2 IEA
ISO
GO_REF:0000107
MGI:4363845 (MGI:5603985|PMID:24751727)
Ensembl
RGD
PMID:24751727 GO_REF:0000107, MGI:5603985 NCBI chr 7:143,412,858...143,420,463
Ensembl chr 7:143,412,858...143,420,027
JBrowse link
G Krt20 keratin 20 ISO
IEA
ISS
(PMID:12857878)
(MGI:3759340|PMID:12857878)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:12857878 GO_REF:0000024, GO_REF:0000107, MGI:3759340 NCBI chr10:87,342,514...87,351,045
Ensembl chr10:87,342,619...87,351,045
JBrowse link
G Krt25 keratin 25 ISO MGI:3707007 (MGI:3770737|PMID:17920809) RGD PMID:17920809 MGI:3770737 NCBI chr10:87,225,361...87,238,659
Ensembl chr10:87,225,343...87,232,723
JBrowse link
G Krt71 keratin 71 ISO (PMID:22592156) RGD PMID:22592156 NCBI chr 7:143,345,201...143,371,346
Ensembl chr 7:143,345,201...143,353,925
JBrowse link
G Krt9 keratin 9 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:10218578)
Ensembl
UniProt
RGD
PMID:10218578 GO_REF:0000024, GO_REF:0000107 NCBI chr10:88,102,519...88,107,232
Ensembl chr10:88,102,519...88,107,232
JBrowse link
G Mtm1 myotubularin 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:21135508)
Ensembl
UniProt
RGD
PMID:21135508 GO_REF:0000024, GO_REF:0000107 NCBI chr 6:18,821,821...18,840,449
Ensembl chr 6:18,821,815...18,839,409
JBrowse link
G Nefl neurofilament light ISO (PMID:12432080), (PMID:17052987)
(MGI:1096547|PMID:7946341), (MGI:2182115|PMID:2121744)
RGD PMID:2121744, PMID:7946341, PMID:12432080, PMID:17052987 MGI:1096547, MGI:2182115 NCBI chr15:44,799,378...44,803,251
Ensembl chr15:44,799,334...44,804,574
JBrowse link
G Shh sonic hedgehog signaling molecule IEA
ISO
GO_REF:0000107
MGI:1861186 (MGI:1929969|PMID:11171399)
Ensembl
RGD
PMID:11171399 GO_REF:0000107, MGI:1929969 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Tchh trichohyalin IBA
ISO
PMID:21873635
(MGI:2678962|PMID:12853460)
RGD PMID:12853460, PMID:21873635 MGI:2678962, RGD:13792537 NCBI chr 2:193,778,022...193,784,793
Ensembl chr 2:193,778,042...193,783,761
JBrowse link
G Vim vimentin IEA
ISO
ISS
GO_REF:0000107
MGI:95697 (MGI:3719550|PMID:11487638), (MGI:6414994|PMID:27559293)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:11487638, PMID:27559293 GO_REF:0000024, GO_REF:0000107, MGI:3719550, MGI:6414994 NCBI chr17:80,882,715...80,891,200
Ensembl chr17:80,882,666...80,891,212
JBrowse link
intermediate filament polymerization or depolymerization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nefl neurofilament light IDA RGD PMID:10362553 RGD:9698446 NCBI chr15:44,799,378...44,803,251
Ensembl chr15:44,799,334...44,804,574
JBrowse link
G Nefm neurofilament medium IDA RGD PMID:10362553 RGD:9698446 NCBI chr15:44,855,307...44,860,604
Ensembl chr15:44,855,310...44,860,604
JBrowse link
neurofilament bundle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nefh neurofilament heavy ISO (PMID:7536898) RGD PMID:7536898 NCBI chr14:85,181,572...85,191,557
Ensembl chr14:85,181,572...85,191,557
JBrowse link
G Nefl neurofilament light IDA
ISO
(PMID:12432080), (PMID:15857389) RGD PMID:12432080, PMID:15857389, PMID:7721944 RGD:9743935 NCBI chr15:44,799,378...44,803,251
Ensembl chr15:44,799,334...44,804,574
JBrowse link
G Nefm neurofilament medium IDA
IEA
GO_REF:0000002 InterPro PMID:7721944 GO_REF:0000002, RGD:9743935 NCBI chr15:44,855,307...44,860,604
Ensembl chr15:44,855,310...44,860,604
JBrowse link
neurofilament cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef28 Rho guanine nucleotide exchange factor 28 ISO (MGI:3619625|PMID:16236762) RGD PMID:16236762 MGI:3619625 NCBI chr 2:25,738,514...26,011,429
Ensembl chr 2:25,738,514...26,011,429
JBrowse link
G Atp8a2 ATPase phospholipid transporting 8A2 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr15:39,955,689...40,488,737
Ensembl chr15:40,000,322...40,428,800
JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein ISO MGI:1856959 (MGI:3709684|PMID:2061715) RGD PMID:2061715 MGI:3709684 NCBI chr16:79,828,321...79,838,212
Ensembl chr16:79,828,324...79,838,212
JBrowse link
G Ina internexin neuronal intermediate filament protein, alpha IEA
ISO
GO_REF:0000107
MGI:97313 (MGI:1339419|PMID:10350642)
Ensembl
RGD
PMID:10350642 GO_REF:0000107, MGI:1339419 NCBI chr 1:266,782,835...266,794,389
Ensembl chr 1:266,781,617...266,794,431
JBrowse link
G Ndel1 nudE neurodevelopment protein 1-like 1 ISO (MGI:3047464|PMID:15208636) RGD PMID:15208636 MGI:3047464 NCBI chr10:55,398,919...55,456,654
Ensembl chr10:55,411,901...55,444,861
JBrowse link
G Nefh neurofilament heavy ISO MGI:2387787|MGI:97313|MGI:97314 (MGI:1342909|PMID:10461886), (MGI:4836441|PMID:20633607) RGD PMID:10461886, PMID:20633607 MGI:1342909, MGI:4836441 NCBI chr14:85,181,572...85,191,557
Ensembl chr14:85,181,572...85,191,557
JBrowse link
G Nefl neurofilament light ISO MGI:2180095|MGI:96568|MGI:97309|MGI:97314|MGI:98351 (MGI:1100197|PMID:9398473), (MGI:1339419|PMID:10350642), (MGI:1342909|PMID:10461886), (MGI:1347434|PMID:15132161), (MGI:1934092|PMID:11343650), (MGI:2148377|PMID:11487626), (MGI:2679157|PMID:14561875), (MGI:3664358|PMID:16920084) RGD PMID:9398473, PMID:10350642, PMID:10461886, PMID:11343650, PMID:11487626, PMID:14561875, PMID:15132161, PMID:16920084 MGI:1100197, MGI:1339419, MGI:1342909, MGI:1347434, MGI:1934092, MGI:2148377, MGI:2679157, MGI:3664358 NCBI chr15:44,799,378...44,803,251
Ensembl chr15:44,799,334...44,804,574
JBrowse link
G Nefm neurofilament medium ISO MGI:2180135|MGI:97309|MGI:97313 (MGI:1203441|PMID:9566972), (MGI:1342909|PMID:10461886) RGD PMID:9566972, PMID:10461886 MGI:1203441, MGI:1342909 NCBI chr15:44,855,307...44,860,604
Ensembl chr15:44,855,310...44,860,604
JBrowse link
G Sod1 superoxide dismutase 1 ISS
ISO
GO_REF:0000024
MGI:3574016|MGI:97313 (MGI:1934092|PMID:11343650)
UniProt
RGD
PMID:11343650 GO_REF:0000024, MGI:1934092 NCBI chr11:30,363,282...30,368,858
Ensembl chr11:30,363,280...30,368,862
JBrowse link
G Vps54 VPS54 subunit of GARP complex IEA
ISO
GO_REF:0000107
MGI:1857091 (MGI:2149279|PMID:11493023)
Ensembl
RGD
PMID:11493023 GO_REF:0000107, MGI:2149279 NCBI chr14:106,153,407...106,207,715
Ensembl chr14:106,153,575...106,207,658
JBrowse link
positive regulation of intermediate filament depolymerization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nes nestin IDA
IBA
PMID:12686602
PMID:21873635
UniProt
GO_Central
PMID:12686602, PMID:21873635 RGD:633505, RGD:13792537 NCBI chr 2:187,343,109...187,352,972
Ensembl chr 2:187,344,056...187,352,969
JBrowse link
postsynaptic intermediate filament cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ina internexin neuronal intermediate filament protein, alpha IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:266,782,835...266,794,389
Ensembl chr 1:266,781,617...266,794,431
JBrowse link
G Nefh neurofilament heavy IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:85,181,572...85,191,557
Ensembl chr14:85,181,572...85,191,557
JBrowse link
G Nefl neurofilament light IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:44,799,378...44,803,251
Ensembl chr15:44,799,334...44,804,574
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    cellular process 18792
      intermediate filament-based process 58
        intermediate filament cytoskeleton organization 52
          intermediate filament organization + 29
          intermediate filament polymerization or depolymerization + 3
          neurofilament cytoskeleton organization 10
          postsynaptic intermediate filament cytoskeleton organization 3
Path 2
Term Annotations click to browse term
  biological_process 20020
    cellular process 18792
      cellular component organization or biogenesis 6789
        cellular component organization 6534
          organelle organization 4101
            cytoskeleton organization 1459
              intermediate filament cytoskeleton organization 52
                intermediate filament organization + 29
                intermediate filament polymerization or depolymerization + 3
                neurofilament cytoskeleton organization 10
                postsynaptic intermediate filament cytoskeleton organization 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.