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ONTOLOGY REPORT - ANNOTATIONS


Term:intermediate filament cytoskeleton organization
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Accession:GO:0045104 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising intermediate filaments and their associated proteins.
Synonyms:exact_synonym: intermediate filament cytoskeleton organisation
 related_synonym: intermediate filament cytoskeleton organization and biogenesis


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intermediate filament cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn3 ataxin 3 ISO (PMID:20637808) MGI PMID:20637808 NCBI chrNW_004936733:306,400...347,161 JBrowse link
G Bfsp2 beaded filament structural protein 2 ISO (MGI:2673300|PMID:15037121) MGI PMID:15037121 MGI:2673300 NCBI chrNW_004936529:6,632,292...6,699,968 JBrowse link
G Csnk1a1 casein kinase 1 alpha 1 ISO (PMID:23902688) UniProtKB PMID:23902688 NCBI chrNW_004936504:5,351,354...5,394,856 JBrowse link
G Dsp desmoplakin ISO (MGI:1327099|PMID:9864371) MGI PMID:9864371 MGI:1327099 NCBI chrNW_004936534:5,029,008...5,076,467 JBrowse link
G Dst dystonin ISO (PMID:11751855) UniProtKB PMID:11751855 NCBI chrNW_004936476:4,344,673...4,772,892 JBrowse link
G Fam83h family with sequence similarity 83 member H ISO (PMID:23902688) UniProtKB PMID:23902688 NCBI chrNW_004936470:8,413,055...8,418,360 JBrowse link
G Ina internexin neuronal intermediate filament protein alpha ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chrNW_004936600:2,747,649...2,760,517 JBrowse link
G Krt18 keratin 18 ISO (PMID:20346438) UniProtKB PMID:20346438 NCBI chrNW_004936512:10,290,706...10,294,647 JBrowse link
G Krt3 keratin 3 ISO (PMID:9171831) UniProtKB PMID:9171831 NCBI chrNW_004936512:10,158,984...10,165,131 JBrowse link
G Nefh neurofilament heavy ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chrNW_004936657:3,443,406...3,453,096 JBrowse link
G Nefm neurofilament medium ISO (MGI:2679157|PMID:14561875) MGI PMID:14561875 MGI:2679157 NCBI chrNW_004936757:1,662,905...1,668,707 JBrowse link
G Prph peripherin ISO (MGI:2653435|PMID:12642616) RGD
MGI
PMID:8575457, PMID:12642616 MGI:2653435, RGD:633740 NCBI chrNW_004936512:7,046,275...7,050,958 JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase ISO (MGI:3612236|PMID:16365167) MGI PMID:16365167 MGI:3612236 NCBI chrNW_004936602:1,089,979...1,114,376 JBrowse link
G Tor1a torsin family 1 member A ISO (PMID:16361107) UniProtKB PMID:16361107 NCBI chrNW_004936487:17,012,661...17,020,657 JBrowse link
intermediate filament bundle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101961294 epiplakin ISO (MGI:5816446|PMID:20926261) UniProt PMID:20926261 MGI:5816446 NCBI chrNW_004936470:8,308,135...8,317,259 JBrowse link
G Nefh neurofilament heavy ISO PMID:11034913
(MGI:1342909|PMID:10461886)
BHF-UCL
MGI
PMID:10461886, PMID:11034913 MGI:1342909, RGD:8554743 NCBI chrNW_004936657:3,443,406...3,453,096 JBrowse link
G Nefl neurofilament light ISO (MGI:1342909|PMID:10461886)
(MGI:5553249|PMID:11034913)
MGI
BHF-UCL
PMID:10461886, PMID:11034913 MGI:1342909, MGI:5553249 NCBI chrNW_004936757:1,642,122...1,646,499 JBrowse link
G Nefm neurofilament medium ISO (MGI:1342909|PMID:10461886) MGI PMID:10461886 MGI:1342909 NCBI chrNW_004936757:1,662,905...1,668,707 JBrowse link
G Pkp1 plakophilin 1 ISO (PMID:10852826) BHF-UCL PMID:10852826 NCBI chrNW_004936567:3,089,902...3,138,252 JBrowse link
G Pkp2 plakophilin 2 ISO (PMID:18474624) BHF-UCL PMID:18474624 NCBI chrNW_004936607:3,458,406...3,530,066 JBrowse link
intermediate filament organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agfg1 ArfGAP with FG repeats 1 ISO (MGI:3040020|PMID:14724135) MGI PMID:14724135 MGI:3040020 NCBI chrNW_004936525:8,463,475...8,504,201 JBrowse link
G Bfsp1 beaded filament structural protein 1 ISO (MGI:6414994|PMID:27559293) UniProt PMID:27559293 MGI:6414994 NCBI chrNW_004936485:2,566,698...2,599,946 JBrowse link
G Bfsp2 beaded filament structural protein 2 ISO (MGI:6414994|PMID:27559293) UniProt PMID:27559293 MGI:6414994 NCBI chrNW_004936529:6,632,292...6,699,968 JBrowse link
G Des desmin ISO (PMID:24200904), (PMID:26724190) UniProtKB PMID:24200904, PMID:26724190 NCBI chrNW_004936569:1,807,902...1,814,936 JBrowse link
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 ISO (PMID:10954706) UniProtKB PMID:10954706 NCBI chrNW_004936797:332,962...377,397 JBrowse link
G Dsp desmoplakin ISO (MGI:3723417|PMID:16917092) BHF-UCL PMID:16917092 MGI:3723417 NCBI chrNW_004936534:5,029,008...5,076,467 JBrowse link
G Gfap glial fibrillary acidic protein ISO (PMID:15732097)
(MGI:1889059|PMID:8692820)
(MGI:3719550|PMID:11487638)
UniProtKB
MGI
PMID:8692820, PMID:11487638, PMID:15732097 MGI:1889059, MGI:3719550 NCBI chrNW_004936541:1,265,915...1,275,232 JBrowse link
G Klhl24 kelch like family member 24 ISO (PMID:27889062) UniProtKB PMID:27889062 NCBI chrNW_004936578:6,116,117...6,151,244 JBrowse link
G Krt10 keratin 10 ISO (MGI:5603985|PMID:24751727) MGI PMID:24751727 MGI:5603985 NCBI chrNW_004936490:15,783,636...15,788,605 JBrowse link
G Krt2 keratin 2 ISO (MGI:5603985|PMID:24751727) MGI PMID:24751727 MGI:5603985 NCBI chrNW_004936512:10,054,708...10,061,021 JBrowse link
G Krt25 keratin 25 ISO (MGI:3770737|PMID:17920809) MGI PMID:17920809 MGI:3770737 NCBI chrNW_004936490:15,727,697...15,733,784 JBrowse link
G Krt6a keratin 6A ISO (MGI:3525934|PMID:15601842) MGI PMID:15601842 MGI:3525934 NCBI chrNW_004936512:9,903,206...9,908,009 JBrowse link
G Krt9 keratin 9 ISO (PMID:10218578) UniProtKB PMID:10218578 NCBI chrNW_004936490:16,477,991...16,481,797 JBrowse link
G LOC101961294 epiplakin ISO (PMID:15671067)
(MGI:5805359|PMID:25617501)
(MGI:3805230|PMID:18285451)
(PMID:23398049)
UniProtKB
UniProt
PMID:15671067, PMID:18285451, PMID:23398049, PMID:25617501 MGI:3805230, MGI:5805359 NCBI chrNW_004936470:8,308,135...8,317,259 JBrowse link
G LOC101971622 trichohyalin ISO (MGI:2678962|PMID:12853460) MGI PMID:12853460 MGI:2678962 NCBI chrNW_004936580:2,277,109...2,283,088 JBrowse link
G Mtm1 myotubularin 1 ISO (PMID:21135508) UniProtKB PMID:21135508 NCBI chrNW_004936714:1,792,893...1,870,338 JBrowse link
G Nefl neurofilament light ISO (PMID:12432080), (PMID:17052987)
(MGI:1096547|PMID:7946341), (MGI:2182115|PMID:2121744)
UniProtKB
MGI
PMID:2121744, PMID:7946341, PMID:12432080, PMID:17052987 MGI:1096547, MGI:2182115 NCBI chrNW_004936757:1,642,122...1,646,499 JBrowse link
G Shh sonic hedgehog signaling molecule ISO (MGI:1929969|PMID:11171399) MGI PMID:11171399 MGI:1929969 NCBI chrNW_004936527:10,033,095...10,042,713 JBrowse link
G Vim vimentin ISO (MGI:3719550|PMID:11487638)
(MGI:6414994|PMID:27559293)
MGI
UniProt
PMID:11487638, PMID:27559293 MGI:3719550, MGI:6414994 NCBI chrNW_004936520:10,051,692...10,059,324 JBrowse link
intermediate filament polymerization or depolymerization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nefl neurofilament light ISO RGD PMID:10362553 RGD:9698446 NCBI chrNW_004936757:1,642,122...1,646,499 JBrowse link
G Nefm neurofilament medium ISO RGD PMID:10362553 RGD:9698446 NCBI chrNW_004936757:1,662,905...1,668,707 JBrowse link
neurofilament bundle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nefh neurofilament heavy ISO (PMID:7536898) BHF-UCL PMID:7536898 NCBI chrNW_004936657:3,443,406...3,453,096 JBrowse link
G Nefl neurofilament light ISO (PMID:15857389)
(PMID:12432080)
RGD
UniProtKB
PMID:7721944, PMID:12432080, PMID:15857389 RGD:9743935 NCBI chrNW_004936757:1,642,122...1,646,499 JBrowse link
G Nefm neurofilament medium ISO RGD PMID:7721944 RGD:9743935 NCBI chrNW_004936757:1,662,905...1,668,707 JBrowse link
neurofilament cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef28 Rho guanine nucleotide exchange factor 28 ISO (MGI:3619625|PMID:16236762) MGI PMID:16236762 MGI:3619625 NCBI chrNW_004936549:2,685,953...2,977,754 JBrowse link
G Cln8 CLN8 transmembrane ER and ERGIC protein ISO (MGI:3709684|PMID:2061715) MGI PMID:2061715 MGI:3709684 NCBI chrNW_004936615:993,092...999,976 JBrowse link
G Ina internexin neuronal intermediate filament protein alpha ISO (MGI:1339419|PMID:10350642) MGI PMID:10350642 MGI:1339419 NCBI chrNW_004936600:2,747,649...2,760,517 JBrowse link
G Ndel1 nudE neurodevelopment protein 1 like 1 ISO (MGI:3047464|PMID:15208636) MGI PMID:15208636 MGI:3047464 NCBI chrNW_004936595:1,656,956...1,692,775 JBrowse link
G Nefh neurofilament heavy ISO (MGI:1342909|PMID:10461886)
(MGI:4836441|PMID:20633607)
MGI PMID:10461886, PMID:20633607 MGI:1342909, MGI:4836441 NCBI chrNW_004936657:3,443,406...3,453,096 JBrowse link
G Nefl neurofilament light ISO (MGI:1100197|PMID:9398473), (MGI:1347434|PMID:15132161), (MGI:2148377|PMID:11487626), (MGI:2679157|PMID:14561875), (MGI:3664358|PMID:16920084)
(MGI:1339419|PMID:10350642)
(MGI:1342909|PMID:10461886)
(MGI:1934092|PMID:11343650)
MGI PMID:9398473, PMID:10350642, PMID:10461886, PMID:11343650, PMID:11487626, PMID:14561875, PMID:15132161, PMID:16920084 MGI:1100197, MGI:1339419, MGI:1342909, MGI:1347434, MGI:1934092, MGI:2148377, MGI:2679157, MGI:3664358 NCBI chrNW_004936757:1,642,122...1,646,499 JBrowse link
G Nefm neurofilament medium ISO (MGI:1203441|PMID:9566972)
(MGI:1342909|PMID:10461886)
MGI PMID:9566972, PMID:10461886 MGI:1203441, MGI:1342909 NCBI chrNW_004936757:1,662,905...1,668,707 JBrowse link
G Sod1 superoxide dismutase 1 ISO (MGI:1934092|PMID:11343650) MGI PMID:11343650 MGI:1934092 NCBI chrNW_004936500:10,345,154...10,352,873 JBrowse link
G Vps54 VPS54 subunit of GARP complex ISO (MGI:2149279|PMID:11493023) MGI PMID:11493023 MGI:2149279 NCBI chrNW_004936491:8,835,397...8,922,403 JBrowse link
positive regulation of intermediate filament depolymerization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nes nestin ISO PMID:12686602 UniProt PMID:12686602 RGD:633505 NCBI chrNW_004936580:5,837,949...5,847,499 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12002
    cellular process 11179
      intermediate filament-based process 40
        intermediate filament cytoskeleton organization 39
          intermediate filament organization + 23
          intermediate filament polymerization or depolymerization + 3
          neurofilament cytoskeleton organization 9
          postsynaptic intermediate filament cytoskeleton organization 0
Path 2
Term Annotations click to browse term
  biological_process 12002
    cellular process 11179
      cellular component organization or biogenesis 4923
        cellular component organization 4845
          organelle organization 3004
            cytoskeleton organization 1085
              intermediate filament cytoskeleton organization 39
                intermediate filament organization + 23
                intermediate filament polymerization or depolymerization + 3
                neurofilament cytoskeleton organization 9
                postsynaptic intermediate filament cytoskeleton organization 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.