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ONTOLOGY REPORT - ANNOTATIONS


Term:cell fate commitment
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Accession:GO:0045165 term browser browse the term
Definition:The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field.
Comment:Note that this term was 'cell fate determination' but the term name was changed to better match its existing definition and the child term 'cell fate determination; GO:0001709' was also created.


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cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Barhl2 BarH-like homeobox 2 JBrowse link 14 4,362,717 4,367,614 RGD:1624291
G Bmp2 bone morphogenetic protein 2 JBrowse link 3 126,335,963 126,346,771 RGD:1624291
RGD:1600115
G Bmp4 bone morphogenetic protein 4 JBrowse link 15 20,776,060 20,791,013 RGD:1624291
G Casp3 caspase 3 JBrowse link 16 48,845,011 48,863,249 RGD:1624291
RGD:1600115
G Erbb4 erb-b2 receptor tyrosine kinase 4 JBrowse link 9 75,021,790 76,178,936 RGD:1624291
RGD:1600115
G Eya1 EYA transcriptional coactivator and phosphatase 1 JBrowse link 5 4,275,728 4,495,525 RGD:1624291
G Fgf8 fibroblast growth factor 8 JBrowse link 1 265,492,949 265,498,965 RGD:1624291
G Fgfr2 fibroblast growth factor receptor 2 JBrowse link 1 200,590,951 200,696,946 RGD:1624291
G Gap43 growth associated protein 43 JBrowse link 11 58,624,198 58,717,916 RGD:1624291
RGD:1600115
G Gas1 growth arrest-specific 1 JBrowse link 17 4,846,116 4,849,350 RGD:1624291
G Gdf7 growth differentiation factor 7 JBrowse link 6 33,496,596 33,507,626 RGD:1624291
RGD:1600115
G Gfi1 growth factor independent 1 transcriptional repressor JBrowse link 14 3,058,035 3,073,332 RGD:1624291
G Hes1 hes family bHLH transcription factor 1 JBrowse link 11 74,312,837 74,315,249 RGD:1624291
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 JBrowse link 1 29,191,170 29,201,257 RGD:1624291
RGD:1600115
G Hoxa2 homeobox A2 JBrowse link 4 82,130,441 82,134,846 RGD:1624291
G Kdm6b lysine demethylase 6B JBrowse link 10 56,000,494 56,009,582 RGD:1624291
G Kdr kinase insert domain receptor JBrowse link 14 34,727,677 34,787,127 RGD:1624291
G Mef2c myocyte enhancer factor 2C JBrowse link 2 11,658,534 11,822,788 RGD:1624291
G Mitf melanocyte inducing transcription factor JBrowse link 4 130,172,484 130,425,496 RGD:1624291
RGD:1600115
G Neurod1 neuronal differentiation 1 JBrowse link 3 66,414,314 66,417,617 RGD:1624291
G Neurod4 neuronal differentiation 4 JBrowse link 7 9,699,964 9,712,067 RGD:1624291
RGD:1600115
G Neurog1 neurogenin 1 JBrowse link 17 9,154,656 9,156,175 RGD:1624291
RGD:1600115
G Neurog2 neurogenin 2 JBrowse link 2 231,962,517 231,963,441 RGD:1624291
G Nodal nodal growth differentiation factor JBrowse link 20 31,035,729 31,044,096 RGD:1624291
G Notch1 notch receptor 1 JBrowse link 3 3,905,562 3,951,015 RGD:1624291
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 JBrowse link 20 47,286,843 47,306,318 RGD:1624291
RGD:1600115
G Onecut1 one cut homeobox 1 JBrowse link 8 81,765,779 81,799,894 RGD:1624291
RGD:1600115
G Onecut2 one cut homeobox 2 JBrowse link 18 59,830,375 59,882,490 RGD:1624291
RGD:1600115
G Otx2 orthodenticle homeobox 2 JBrowse link 15 25,500,037 25,511,619 RGD:1624291
G Pax6 paired box 6 JBrowse link 3 95,700,241 95,728,682 RGD:1624291
G Pml promyelocytic leukemia JBrowse link 8 63,002,515 63,034,310 RGD:1624291
RGD:1600115
G Pou5f1 POU class 5 homeobox 1 JBrowse link 20 3,747,231 3,751,994 RGD:1624291
G Pparg peroxisome proliferator-activated receptor gamma JBrowse link 4 147,274,055 147,399,383 RGD:1624291
G Prdm1 PR/SET domain 1 JBrowse link 20 49,464,921 49,556,623 RGD:1624291
RGD:13792537
G Ptf1a pancreas associated transcription factor 1a JBrowse link 17 86,199,623 86,201,477 RGD:1624291
G Rbpj recombination signal binding protein for immunoglobulin kappa J region JBrowse link 14 59,657,738 59,865,427 RGD:1624291
G Ror2 receptor tyrosine kinase-like orphan receptor 2 JBrowse link 17 11,953,552 12,134,386 RGD:1624291
RGD:1600115
G Shh sonic hedgehog signaling molecule JBrowse link 4 718,538 727,691 RGD:1624291
G Smad2 SMAD family member 2 JBrowse link 18 72,550,107 72,612,078 RGD:1624291
RGD:1600115
G Sox12 SRY-box transcription factor 12 JBrowse link 3 147,864,374 147,865,393 RGD:1624291
RGD:1600115
G Sox13 SRY-box transcription factor 13 JBrowse link 13 50,434,702 50,479,118 RGD:13792537
G Sox2 SRY-box transcription factor 2 JBrowse link 2 121,165,137 121,167,545 RGD:1624291
RGD:13792537
G Sox5 SRY-box transcription factor 5 JBrowse link 4 178,062,267 179,031,991 RGD:1624291
RGD:13792537
G Sox6 SRY-box transcription factor 6 JBrowse link 1 185,631,702 186,186,192 RGD:1624291
RGD:13792537
G Sox8 SRY-box transcription factor 8 JBrowse link 10 14,932,348 14,937,336 RGD:1624291
RGD:1600115
G Sox9 SRY-box transcription factor 9 JBrowse link 10 101,288,528 101,294,030 RGD:1624291
G Spry2 sprouty RTK signaling antagonist 2 JBrowse link 15 90,172,769 90,177,823 RGD:1624291
RGD:1600115
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor JBrowse link 5 133,864,401 133,878,604 RGD:1624291
G Tbx19 T-box transcription factor 19 JBrowse link 13 83,403,263 83,426,305 RGD:1624291
G Tead4 TEA domain transcription factor 4 JBrowse link 4 161,542,566 161,619,848 RGD:1624291
G Tgfb1i1 transforming growth factor beta 1 induced transcript 1 JBrowse link 1 199,664,039 199,670,970 RGD:1624291
RGD:1600115
G Tlx1 T-cell leukemia, homeobox 1 JBrowse link 1 264,893,033 264,899,424 RGD:1624291
G Vsx2 visual system homeobox 2 JBrowse link 6 108,285,031 108,308,588 RGD:1624291
G Wnt1 Wnt family member 1 JBrowse link 7 140,464,999 140,469,046 RGD:13792537
G Wnt10a Wnt family member 10A JBrowse link 9 82,053,581 82,066,047 RGD:13792537
G Wnt10b Wnt family member 10B JBrowse link 7 140,448,284 140,466,159 RGD:13792537
G Wnt11 Wnt family member 11 JBrowse link 1 163,794,136 163,813,756 RGD:13792537
G Wnt16 Wnt family member 16 JBrowse link 4 49,369,246 49,388,156 RGD:13792537
G Wnt2 Wnt family member 2 JBrowse link 4 45,286,845 45,332,899 RGD:13792537
G Wnt2b Wnt family member 2B JBrowse link 2 207,433,771 207,457,094 RGD:13792537
G Wnt3 Wnt family member 3 JBrowse link 10 91,830,709 91,874,907 RGD:13792537
G Wnt3a Wnt family member 3A JBrowse link 10 45,598,898 45,643,151 RGD:13792537
G Wnt4 Wnt family member 4 JBrowse link 5 155,649,238 155,668,065 RGD:1624291
RGD:13792537
RGD:1600115
G Wnt5a Wnt family member 5A JBrowse link 16 4,469,451 4,490,271 RGD:13792537
G Wnt5b Wnt family member 5B JBrowse link 4 151,500,962 151,516,894 RGD:13792537
G Wnt6 Wnt family member 6 JBrowse link 9 82,033,543 82,047,172 RGD:13792537
G Wnt7a Wnt family member 7A JBrowse link 4 122,994,425 123,040,609 RGD:13792537
G Wnt7b Wnt family member 7B JBrowse link 7 126,423,418 126,465,724 RGD:13792537
G Wnt8a Wnt family member 8A JBrowse link 18 27,331,236 27,336,829 RGD:13792537
G Wnt8b Wnt family member 8B JBrowse link 1 264,244,150 264,266,136 RGD:13792537
G Wnt9a Wnt family member 9A JBrowse link 10 45,659,045 45,686,103 RGD:13792537
G Wnt9b Wnt family member 9B JBrowse link 10 91,785,892 91,808,061 RGD:13792537
activation of prostate induction by androgen receptor signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ar androgen receptor JBrowse link X 67,656,253 67,828,998 RGD:1624291
RGD:1600115
alpha-beta T cell lineage commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rhoa ras homolog family member A JBrowse link 8 117,082,440 117,116,244 RGD:1624291
RGD:1600115
arterial endothelial cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rbpj recombination signal binding protein for immunoglobulin kappa J region JBrowse link 14 59,657,738 59,865,427 RGD:1624291
astrocyte fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gcm1 glial cells missing transcription factor 1 JBrowse link 8 85,355,766 85,369,002 RGD:1624291
RGD:1600115
G Sox8 SRY-box transcription factor 8 JBrowse link 10 14,932,348 14,937,336 RGD:1624291
RGD:1600115
G Sox9 SRY-box transcription factor 9 JBrowse link 10 101,288,528 101,294,030 RGD:1624291
RGD:1600115
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor JBrowse link 5 133,864,401 133,878,604 RGD:1624291
RGD:1600115
asymmetric neuroblast division term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arhgef2 Rho/Rac guanine nucleotide exchange factor 2 JBrowse link 2 187,964,100 188,022,847 RGD:1624291
RGD:1600115
G Sox5 SRY-box transcription factor 5 JBrowse link 4 178,062,267 179,031,991 RGD:1624291
RGD:1600115
G Tead3 TEA domain transcription factor 3 JBrowse link 20 7,911,562 7,930,949 RGD:1624291
asymmetric protein localization involved in cell fate determination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wnt7a Wnt family member 7A JBrowse link 4 122,994,425 123,040,609 RGD:1624291
RGD:1600115
atrioventricular node cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nkx2-5 NK2 homeobox 5 JBrowse link 10 16,635,989 16,638,758 RGD:1624291
RGD:1600115
auditory receptor cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dll1 delta like canonical Notch ligand 1 JBrowse link 1 57,318,621 57,326,732 RGD:8553270
G Jag2 jagged canonical Notch ligand 2 JBrowse link 6 137,711,144 137,733,331 RGD:1600115
RGD:8553713
RGD:1624291
G Notch1 notch receptor 1 JBrowse link 3 3,905,562 3,951,015 RGD:1624291
RGD:1600115
G Rbpj recombination signal binding protein for immunoglobulin kappa J region JBrowse link 14 59,657,738 59,865,427 RGD:1624291
auditory receptor cell fate determination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atoh1 atonal bHLH transcription factor 1 JBrowse link 4 95,498,003 95,500,098 RGD:1624291
RGD:1600115
auditory receptor cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atoh1 atonal bHLH transcription factor 1 JBrowse link 4 95,498,003 95,500,098 RGD:1624291
RGD:1600115
axial mesodermal cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nodal nodal growth differentiation factor JBrowse link 20 31,035,729 31,044,096 RGD:1624291
RGD:1600115
B cell lineage commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2 BCL2, apoptosis regulator JBrowse link 13 26,605,426 26,769,374 RGD:1624291
RGD:1600115
G Prkdc protein kinase, DNA-activated, catalytic subunit JBrowse link 11 89,293,547 89,510,948 RGD:1624291
RGD:1600115
G Rag2 recombination activating 2 JBrowse link 3 91,191,837 91,200,134 RGD:1624291
RGD:1600115
G Tcf3 transcription factor 3 JBrowse link 7 12,146,642 12,168,400 RGD:1624291
RGD:1600115
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1624291
RGD:1600115
B-1 B cell lineage commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Slamf8 SLAM family member 8 JBrowse link 13 90,967,862 90,978,752 RGD:1624291
blood vessel endothelial cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rbpj recombination signal binding protein for immunoglobulin kappa J region JBrowse link 14 59,657,738 59,865,427 RGD:1624291
BMP signaling pathway involved in mesodermal cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Etv2 ETS variant transcription factor 2 JBrowse link 1 89,091,239 89,094,570 RGD:1624291
RGD:1600115
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ihh Indian hedgehog signaling molecule JBrowse link 9 82,208,223 82,214,440 RGD:1624291
RGD:1600115
canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wnt3a Wnt family member 3A JBrowse link 10 45,598,898 45,643,151 RGD:1624291
RGD:1600115
G Wnt8a Wnt family member 8A JBrowse link 18 27,331,236 27,336,829 RGD:1624291
cardiac cell fate determination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Isl1 ISL LIM homeobox 1 JBrowse link 2 48,488,911 48,501,217 RGD:1624291
RGD:1600115
G Mesp1 mesoderm posterior bHLH transcription factor 1 JBrowse link 1 141,532,390 141,533,908 RGD:1624291
RGD:1600115
G Pou5f1 POU class 5 homeobox 1 JBrowse link 20 3,747,231 3,751,994 RGD:1624291
G Sox17 SRY-box transcription factor 17 JBrowse link 5 14,890,318 14,895,907 RGD:1624291
RGD:1600115
cardiac cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tenm4 teneurin transmembrane protein 4 JBrowse link 1 161,183,858 161,885,094 RGD:1624291
RGD:1600115
cardiac muscle cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acvr1 activin A receptor type 1 JBrowse link 3 44,432,476 44,539,680 RGD:1624291
RGD:1600115
G RGD1311744 similar to RIKEN cDNA 5830475I06 JBrowse link 8 43,315,104 43,336,357 RGD:1600115
G Tbx3 T-box transcription factor 3 JBrowse link 12 42,479,518 42,494,588 RGD:1624291
RGD:1600115
G Wnt3a Wnt family member 3A JBrowse link 10 45,598,898 45,643,151 RGD:1624291
G Wt1 WT1 transcription factor JBrowse link 3 95,133,221 95,180,574 RGD:1624291
CD4-positive or CD8-positive, alpha-beta T cell lineage commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Braf B-Raf proto-oncogene, serine/threonine kinase JBrowse link 4 67,389,331 67,520,549 RGD:1624291
RGD:1600115
G Cyld CYLD lysine 63 deubiquitinase JBrowse link 19 19,264,984 19,323,817 RGD:1624291
RGD:1600115
G Shh sonic hedgehog signaling molecule JBrowse link 4 718,538 727,691 RGD:1624291
RGD:1600115
CD8-positive, alpha-beta T cell lineage commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2 BCL2, apoptosis regulator JBrowse link 13 26,605,426 26,769,374 RGD:1624291
RGD:1600115
cell fate commitment involved in formation of primary germ layer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pou5f1 POU class 5 homeobox 1 JBrowse link 20 3,747,231 3,751,994 RGD:1624291
cell fate determination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atf3 activating transcription factor 3 JBrowse link 13 109,817,892 109,849,632 RGD:1578388
G Barhl2 BarH-like homeobox 2 JBrowse link 14 4,362,717 4,367,614 RGD:1624291
RGD:1600115
G Chrdl1 chordin-like 1 JBrowse link X 114,554,359 114,658,975 RGD:1299653
G Ctnnb1 catenin beta 1 JBrowse link 8 129,601,511 129,628,378 RGD:1624291
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 JBrowse link 4 116,261,796 116,278,615 RGD:1624291
RGD:1600115
G Dll1 delta like canonical Notch ligand 1 JBrowse link 1 57,318,621 57,326,732 RGD:1304491
G Dll3 delta like canonical Notch ligand 3 JBrowse link 1 85,485,875 85,493,683 RGD:1304491
G Ebf2 EBF transcription factor 2 JBrowse link 15 43,905,099 44,103,742 RGD:1624291
RGD:1600115
G Gata2 GATA binding protein 2 JBrowse link 4 120,129,028 120,142,490 RGD:1624291
RGD:1600115
G Gata3 GATA binding protein 3 JBrowse link 17 72,419,752 72,452,043 RGD:1624291
RGD:1600115
G Hoxa2 homeobox A2 JBrowse link 4 82,130,441 82,134,846 RGD:1624291
G Jag1 jagged canonical Notch ligand 1 JBrowse link 3 130,079,361 130,114,781 RGD:8553672
RGD:8553717
G Jag2 jagged canonical Notch ligand 2 JBrowse link 6 137,711,144 137,733,331 RGD:69864
G Nkx6-3 NK6 homeobox 3 JBrowse link 16 73,665,269 73,670,482 RGD:1624291
RGD:1600115
G Notch2 notch receptor 2 JBrowse link 2 200,187,184 200,320,403 RGD:69906
G Pax2 paired box 2 JBrowse link 1 264,493,579 264,585,073 RGD:1624291
RGD:1600115
G Pax6 paired box 6 JBrowse link 3 95,700,241 95,728,682 RGD:1624291
RGD:1600115
G Prox1 prospero homeobox 1 JBrowse link 13 108,382,536 108,444,107 RGD:1624291
RGD:1600115
G Ptch1 patched 1 JBrowse link 17 1,032,242 1,085,885 RGD:1624291
RGD:1600115
G Ptch2 patched 2 JBrowse link 5 135,962,252 135,983,816 RGD:1624291
cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apc APC regulator of WNT signaling pathway JBrowse link 18 27,011,710 27,106,323 RGD:13792537
G Apc2 APC regulator of WNT signaling pathway 2 JBrowse link 7 12,258,468 12,280,459 RGD:13792537
G Cdon cell adhesion associated, oncogene regulated JBrowse link 8 36,625,757 36,712,091 RGD:1624291
RGD:1600115
G Ctnnb1 catenin beta 1 JBrowse link 8 129,601,511 129,628,378 RGD:1624291
RGD:1600115
G Dhh desert hedgehog signaling molecule JBrowse link 7 140,575,288 140,580,783 RGD:13792537
G Fkbp8 FKBP prolyl isomerase 8 JBrowse link 16 20,645,956 20,652,890 RGD:1624291
RGD:1600115
G Foxa2 forkhead box A2 JBrowse link 3 142,383,084 142,387,493 RGD:1624291
RGD:1600115
G Ihh Indian hedgehog signaling molecule JBrowse link 9 82,208,223 82,214,440 RGD:1624291
RGD:13792537
G Itgb1 integrin subunit beta 1 JBrowse link 19 61,677,512 61,725,537 RGD:1624291
RGD:1600115
G Mga MAX dimerization protein MGA JBrowse link 3 111,669,645 111,760,822 RGD:13792537
G Notch1 notch receptor 1 JBrowse link 3 3,905,562 3,951,015 RGD:1624291
RGD:1600115
G Otx2 orthodenticle homeobox 2 JBrowse link 15 25,500,037 25,511,619 RGD:1624291
G Pou1f1 POU class 1 homeobox 1 JBrowse link 11 2,645,659 2,662,581 RGD:1624291
RGD:1600115
G Prdm14 PR/SET domain 14 JBrowse link 5 5,710,076 5,730,560 RGD:1624291
RGD:1600115
G Psen1 presenilin 1 JBrowse link 6 107,169,514 107,221,000 RGD:1624291
RGD:1600115
G Psen2 presenilin 2 JBrowse link 13 98,513,600 98,539,347 RGD:1624291
G Shh sonic hedgehog signaling molecule JBrowse link 4 718,538 727,691 RGD:1600115
RGD:13792537
RGD:1624291
G Smo smoothened, frizzled class receptor JBrowse link 4 57,019,941 57,041,779 RGD:1624291
RGD:1600115
G Sox2 SRY-box transcription factor 2 JBrowse link 2 121,165,137 121,167,545 RGD:1624291
G Sox9 SRY-box transcription factor 9 JBrowse link 10 101,288,528 101,294,030 RGD:1624291
RGD:1600115
G Tbr1 T-box brain transcription factor 1 JBrowse link 3 47,677,720 47,685,902 RGD:13792537
G Tbx1 T-box transcription factor 1 JBrowse link 11 86,552,022 86,561,647 RGD:1600115
RGD:13792537
RGD:1624291
G Tbx10 T-box transcription factor 10 JBrowse link 1 219,237,204 219,246,480 RGD:13792537
G Tbx15 T-box transcription factor 15 JBrowse link 2 201,289,042 201,390,752 RGD:13792537
G Tbx18 T-box transcription factor 18 JBrowse link 8 95,359,354 95,387,363 RGD:13792537
G Tbx19 T-box transcription factor 19 JBrowse link 13 83,403,263 83,426,305 RGD:13792537
G Tbx2 T-box transcription factor 2 JBrowse link 10 73,278,932 73,290,764 RGD:13792537
G Tbx20 T-box transcription factor 20 JBrowse link 8 25,849,394 25,904,570 RGD:13792537
G Tbx21 T-box transcription factor 21 JBrowse link 10 85,032,799 85,049,331 RGD:13792537
G Tbx22 T-box transcription factor 22 JBrowse link X 78,731,738 78,782,542 RGD:13792537
G Tbx3 T-box transcription factor 3 JBrowse link 12 42,479,518 42,494,588 RGD:13792537
G Tbx4 T-box transcription factor 4 JBrowse link 10 73,331,864 73,362,784 RGD:13792537
G Tbx5 T-box transcription factor 5 JBrowse link 12 42,059,688 42,148,226 RGD:13792537
G Tbx6 T-box transcription factor 6 JBrowse link 1 198,214,797 198,218,706 RGD:1624291
RGD:13792537
G Tbxt T-box transcription factor T JBrowse link 1 52,887,067 52,900,691 RGD:13792537
G Tead4 TEA domain transcription factor 4 JBrowse link 4 161,542,566 161,619,848 RGD:1624291
G Tlx3 T-cell leukemia, homeobox 3 JBrowse link 10 18,128,869 18,131,745 RGD:1624291
cerebral cortex GABAergic interneuron fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dlx1 distal-less homeobox 1 JBrowse link 3 58,164,931 58,169,521 RGD:1624291
RGD:1600115
G Dlx2 distal-less homeobox 2 JBrowse link 3 58,180,088 58,181,971 RGD:1624291
RGD:1600115
commitment of neuronal cell to specific neuron type in forebrain term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ascl1 achaete-scute family bHLH transcription factor 1 JBrowse link 7 28,038,662 28,040,504 RGD:1624291
RGD:1600115
G Bcl11b BAF chromatin remodeling complex subunit BCL11B JBrowse link 6 131,834,097 131,927,251 RGD:1624291
RGD:1600115
G Fezf2 Fez family zinc finger 2 JBrowse link 15 12,825,333 12,831,496 RGD:1624291
RGD:1600115
G Gata2 GATA binding protein 2 JBrowse link 4 120,129,028 120,142,490 RGD:1624291
RGD:1600115
G Pax6 paired box 6 JBrowse link 3 95,700,241 95,728,682 RGD:1624291
RGD:1600115
G Satb2 SATB homeobox 2 JBrowse link 9 63,456,877 63,642,193 RGD:1624291
RGD:1600115
G Tbr1 T-box brain transcription factor 1 JBrowse link 3 47,677,720 47,685,902 RGD:1624291
RGD:13792537
ectodermal cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Elf5 E74 like ETS transcription factor 5 JBrowse link 3 93,333,514 93,374,454 RGD:1624291
RGD:1600115
G Ets2 ETS proto-oncogene 2, transcription factor JBrowse link 11 36,075,709 36,092,495 RGD:1624291
RGD:1600115
G Pou5f1 POU class 5 homeobox 1 JBrowse link 20 3,747,231 3,751,994 RGD:1624291
RGD:1600115
endocardial cushion cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acvr1 activin A receptor type 1 JBrowse link 3 44,432,476 44,539,680 RGD:1624291
RGD:1600115
endodermal cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdc73 cell division cycle 73 JBrowse link 13 60,403,771 60,496,511 RGD:1600115
RGD:1624291
G Ctnnb1 catenin beta 1 JBrowse link 8 129,601,511 129,628,378 RGD:1624291
RGD:1600115
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 175,839,140 175,869,167 RGD:1624291
RGD:1600115
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component JBrowse link 8 82,380,906 82,405,293 RGD:1624291
RGD:1600115
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 85,362,421 85,367,999 RGD:1624291
RGD:1600115
G Pou5f1 POU class 5 homeobox 1 JBrowse link 20 3,747,231 3,751,994 RGD:1624291
RGD:1600115
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) JBrowse link 3 111,478,350 111,537,941 RGD:1624291
endodermal cell fate determination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gata6 GATA binding protein 6 JBrowse link 18 2,415,821 2,447,087 RGD:1624291
RGD:1600115
G Sox17 SRY-box transcription factor 17 JBrowse link 5 14,890,318 14,895,907 RGD:1624291
RGD:1600115
endodermal cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eomes eomesodermin JBrowse link 8 127,144,367 127,152,618 RGD:1624291
RGD:1600115
G Hnf1b HNF1 homeobox B JBrowse link 10 71,159,863 71,218,902 RGD:1624291
RGD:1600115
G Nanog Nanog homeobox JBrowse link 4 155,531,906 155,539,268 RGD:1624291
G Pou5f1 POU class 5 homeobox 1 JBrowse link 20 3,747,231 3,751,994 RGD:1624291
G Sox2 SRY-box transcription factor 2 JBrowse link 2 121,165,137 121,167,545 RGD:1624291
RGD:1600115
endothelial cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hoxa13 homeo box A13 RGD:1624291
endothelial tip cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dll1 delta like canonical Notch ligand 1 JBrowse link 1 57,318,621 57,326,732 RGD:1600115
RGD:1624291
eosinophil fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gata1 GATA binding protein 1 JBrowse link X 15,273,937 15,281,759 RGD:1624291
G Gata2 GATA binding protein 2 JBrowse link 4 120,129,028 120,142,490 RGD:1624291
RGD:1600115
epidermal cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ptch1 patched 1 JBrowse link 17 1,032,242 1,085,885 RGD:1624291
RGD:1600115
G Ptch2 patched 2 JBrowse link 5 135,962,252 135,983,816 RGD:1624291
G Rbpj recombination signal binding protein for immunoglobulin kappa J region JBrowse link 14 59,657,738 59,865,427 RGD:1624291
epithelial cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arx aristaless related homeobox JBrowse link X 62,363,757 62,376,139 RGD:1624291
RGD:1600115
G Fgfr3 fibroblast growth factor receptor 3 JBrowse link 14 82,272,322 82,287,739 RGD:1624291
G Gata4 GATA binding protein 4 JBrowse link 15 46,386,703 46,458,679 RGD:1624291
establishment of neuroblast polarity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dock7 dedicator of cytokinesis 7 JBrowse link 5 117,595,194 117,780,844 RGD:1624291
RGD:1600115
G Fgf13 fibroblast growth factor 13 JBrowse link X 142,053,648 142,589,274 RGD:1624291
RGD:1600115
G Rab10 RAB10, member RAS oncogene family JBrowse link 6 27,668,387 27,721,120 RGD:8553614
eye photoreceptor cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Otx2 orthodenticle homeobox 2 JBrowse link 15 25,500,037 25,511,619 RGD:1624291
forebrain neuron fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lhx6 LIM homeobox 6 JBrowse link 3 15,409,349 15,433,504 RGD:1624291
G Nkx2-1 NK2 homeobox 1 JBrowse link 6 77,418,096 77,423,383 RGD:1624291
RGD:1600115
G Tfap2c transcription factor AP-2 gamma JBrowse link 3 170,550,314 170,558,197 RGD:1624291
gamma-delta T cell lineage commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Olr292 olfactory receptor 292 JBrowse link 1 212,714,092 212,886,388 RGD:1600115
ganglion mother cell fate determination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ntf4 neurotrophin 4 JBrowse link 1 101,405,314 101,408,145 RGD:1624291
RGD:8554690
glial cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hes5 hes family bHLH transcription factor 5 JBrowse link 5 172,364,421 172,365,188 RGD:1624291
RGD:1600115
G Nfe2l1 nuclear factor, erythroid 2-like 1 JBrowse link 10 84,686,762 84,699,313 RGD:1600115
RGD:1624291
G Nrg1 neuregulin 1 JBrowse link 16 62,969,573 64,065,063 RGD:1624291
RGD:1600115
glial cell fate determination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctnnb1 catenin beta 1 JBrowse link 8 129,601,511 129,628,378 RGD:1624291
RGD:1600115
G Ntf3 neurotrophin 3 JBrowse link 4 158,636,883 158,705,886 RGD:1624291
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:1624291
inner cell mass cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lats1 large tumor suppressor kinase 1 JBrowse link 1 1,784,078 1,817,310 RGD:1624291
RGD:1600115
G Lats2 large tumor suppressor kinase 2 JBrowse link 15 37,943,609 37,995,175 RGD:1624291
G Prdm14 PR/SET domain 14 JBrowse link 5 5,710,076 5,730,560 RGD:1624291
RGD:1600115
lateral inhibition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dll1 delta like canonical Notch ligand 1 JBrowse link 1 57,318,621 57,326,732 RGD:1600115
RGD:1624291
G Hes1 hes family bHLH transcription factor 1 JBrowse link 11 74,312,837 74,315,249 RGD:1624291
RGD:1600115
lymphatic endothelial cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pdpn podoplanin JBrowse link 5 161,947,137 161,981,441 RGD:1624291
RGD:1600115
mesodermal cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nanog Nanog homeobox JBrowse link 4 155,531,906 155,539,268 RGD:1624291
G Pou5f1 POU class 5 homeobox 1 JBrowse link 20 3,747,231 3,751,994 RGD:1624291
RGD:1600115
G Smad1 SMAD family member 1 JBrowse link 19 32,182,942 32,248,694 RGD:1624291
RGD:1600115
mesodermal cell fate determination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp4 bone morphogenetic protein 4 JBrowse link 15 20,776,060 20,791,013 RGD:1624291
RGD:1600115
mesodermal cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eya1 EYA transcriptional coactivator and phosphatase 1 JBrowse link 5 4,275,728 4,495,525 RGD:1624291
RGD:1600115
G Hoxa11 homeobox A11 JBrowse link 4 82,296,888 82,301,419 RGD:1624291
G Pax2 paired box 2 JBrowse link 1 264,493,579 264,585,073 RGD:1624291
RGD:1600115
G Six2 SIX homeobox 2 JBrowse link 6 8,952,572 8,955,893 RGD:1624291
RGD:1600115
muscle cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fgf10 fibroblast growth factor 10 JBrowse link 2 51,673,480 51,747,533 RGD:1624291
RGD:1600115
G Tbx1 T-box transcription factor 1 JBrowse link 11 86,552,022 86,561,647 RGD:1624291
RGD:1600115
muscle cell fate determination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mef2c myocyte enhancer factor 2C JBrowse link 2 11,658,534 11,822,788 RGD:1624291
RGD:1600115
G Tbx2 T-box transcription factor 2 JBrowse link 10 73,278,932 73,290,764 RGD:1624291
muscle cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Myl2 myosin light chain 2 JBrowse link 12 39,951,863 39,959,065 RGD:1624291
RGD:1600115
myoblast fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Epas1 endothelial PAS domain protein 1 JBrowse link 6 10,306,508 10,385,239 RGD:1624291
RGD:1600115
G Pitx1 paired-like homeodomain 1 JBrowse link 17 8,873,184 8,884,428 RGD:1624291
RGD:1600115
G Tcf7l2 transcription factor 7 like 2 JBrowse link 1 276,686,911 276,730,517 RGD:1624291
RGD:13792537
myoblast fate determination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Myod1 myogenic differentiation 1 JBrowse link 1 102,396,538 102,399,248 RGD:1624291
RGD:8554648
RGD:1600115
negative regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 JBrowse link 1 248,952,896 248,956,579 RGD:1624291
negative regulation of cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Glis1 GLIS family zinc finger 1 JBrowse link 5 127,043,344 127,233,395 RGD:1600115
RGD:1624291
G Nanog Nanog homeobox JBrowse link 4 155,531,906 155,539,268 RGD:1624291
G Nkx6-2 NK6 homeobox 2 JBrowse link 1 211,922,389 211,923,929 RGD:1624291
RGD:1600115
G Sostdc1 sclerostin domain containing 1 JBrowse link 6 55,812,820 55,816,994 RGD:1624291
RGD:1600115
G Spdef SAM pointed domain containing ets transcription factor JBrowse link 20 7,292,823 7,308,053 RGD:1624291
RGD:1600115
negative regulation of cell fate determination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hes1 hes family bHLH transcription factor 1 JBrowse link 11 74,312,837 74,315,249 RGD:1624291
RGD:1600115
negative regulation of cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gfi1 growth factor independent 1 transcriptional repressor JBrowse link 14 3,058,035 3,073,332 RGD:1624291
negative regulation of ectodermal cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fzd7 frizzled class receptor 7 JBrowse link 9 66,305,731 66,308,550 RGD:1624291
RGD:1600115
negative regulation of endodermal cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mesp1 mesoderm posterior bHLH transcription factor 1 JBrowse link 1 141,532,390 141,533,908 RGD:1624291
RGD:1600115
negative regulation of heart induction by canonical Wnt signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wnt3a Wnt family member 3A JBrowse link 10 45,598,898 45,643,151 RGD:1624291
RGD:1600115
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 JBrowse link 1 248,952,896 248,956,579 RGD:1624291
G Mesp1 mesoderm posterior bHLH transcription factor 1 JBrowse link 1 141,532,390 141,533,908 RGD:1624291
RGD:1600115
G Sfrp2 secreted frizzled-related protein 2 JBrowse link 2 182,723,732 182,731,277 RGD:1624291
RGD:1600115
G Sox17 SRY-box transcription factor 17 JBrowse link 5 14,890,318 14,895,907 RGD:1624291
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Casz1 castor zinc finger 1 JBrowse link 5 165,625,119 165,777,053 RGD:1624291
negative regulation of T-helper 17 cell lineage commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Loxl3 lysyl oxidase-like 3 JBrowse link 4 113,866,782 113,883,713 RGD:1624291
RGD:1600115
G Tbx21 T-box transcription factor 21 JBrowse link 10 85,032,799 85,049,331 RGD:1624291
RGD:1600115
G Tnfsf18 TNF superfamily member 18 JBrowse link 13 79,378,412 79,388,687 RGD:1624291
RGD:1600115
neural crest cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sfrp1 secreted frizzled-related protein 1 JBrowse link 16 73,372,007 73,410,777 RGD:1624291
RGD:1600115
neural crest cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gsc goosecoid homeobox JBrowse link 6 128,147,181 128,149,220 RGD:1624291
RGD:1600115
neuroblast fate determination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ascl1 achaete-scute family bHLH transcription factor 1 JBrowse link 7 28,038,662 28,040,504 RGD:1624291
RGD:1600115
neuron fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ascl1 achaete-scute family bHLH transcription factor 1 JBrowse link 7 28,038,662 28,040,504 RGD:1600115
RGD:1624291
G Bmp4 bone morphogenetic protein 4 JBrowse link 15 20,776,060 20,791,013 RGD:1624291
RGD:1600115
G Epop elongin BC and polycomb repressive complex 2 associated protein JBrowse link 10 85,573,369 85,574,889 RGD:1624291
RGD:13792537
G Foxn4 forkhead box N4 JBrowse link 12 48,101,012 48,121,281 RGD:1624291
G Gata2 GATA binding protein 2 JBrowse link 4 120,129,028 120,142,490 RGD:1624291
G Gbx1 gastrulation brain homeobox 1 JBrowse link 4 7,173,961 7,200,752 RGD:1624291
RGD:1600115
G Gli3 GLI family zinc finger 3 JBrowse link 17 52,294,942 52,569,036 RGD:1624291
G Gsx1 GS homeobox 1 JBrowse link 12 9,605,873 9,607,168 RGD:1624291
RGD:1600115
G Gsx2 GS homeobox 2 JBrowse link 14 35,650,985 35,652,709 RGD:1624291
G Id2 inhibitor of DNA binding 2 JBrowse link 6 44,360,077 44,361,908 RGD:1624291
RGD:1600115
G Isl1 ISL LIM homeobox 1 JBrowse link 2 48,488,911 48,501,217 RGD:1624291
G Isl2 ISL LIM homeobox 2 JBrowse link 8 60,117,565 60,122,716 RGD:1624291
G Lbx1 ladybird homeobox 1 JBrowse link 1 264,973,315 264,975,132 RGD:1624291
G Myt1l myelin transcription factor 1-like JBrowse link 6 48,452,385 48,843,443 RGD:1600115
RGD:1624291
G Nkx2-1 NK2 homeobox 1 JBrowse link 6 77,418,096 77,423,383 RGD:1624291
G Notch1 notch receptor 1 JBrowse link 3 3,905,562 3,951,015 RGD:1624291
G Notch3 notch receptor 3 JBrowse link 7 14,138,495 14,189,688 RGD:1624291
RGD:1600115
G Nrg1 neuregulin 1 JBrowse link 16 62,969,573 64,065,063 RGD:1624291
RGD:1600115
G Olig1 oligodendrocyte transcription factor 1 JBrowse link 11 31,428,377 31,430,519 RGD:1624291
RGD:1600115
G Olig2 oligodendrocyte transcription factor 2 JBrowse link 11 31,389,514 31,392,890 RGD:1624291
RGD:1600115
G Otx2 orthodenticle homeobox 2 JBrowse link 15 25,500,037 25,511,619 RGD:1624291
G Pax3 paired box 3 JBrowse link 9 84,004,004 84,101,226 RGD:1624291
G Pax7 paired box 7 JBrowse link 5 158,211,001 158,313,510 RGD:1624291
RGD:1600115
G Pou3f2 POU class 3 homeobox 2 JBrowse link 5 36,677,452 36,683,356 RGD:1624291
RGD:1600115
G Ptf1a pancreas associated transcription factor 1a JBrowse link 17 86,199,623 86,201,477 RGD:1624291
RGD:1600115
G Runx1 RUNX family transcription factor 1 JBrowse link 11 32,765,147 33,003,061 RGD:1624291
G Shh sonic hedgehog signaling molecule JBrowse link 4 718,538 727,691 RGD:1624291
RGD:1600115
G Smad4 SMAD family member 4 JBrowse link 18 69,626,682 69,657,373 RGD:1624291
RGD:1600115
G Sox2 SRY-box transcription factor 2 JBrowse link 2 121,165,137 121,167,545 RGD:1624291
G Tgfb2 transforming growth factor, beta 2 JBrowse link 13 105,039,639 105,142,010 RGD:1624291
G Tgfbr1 transforming growth factor, beta receptor 1 JBrowse link 5 63,056,071 63,119,635 RGD:1624291
G Wnt1 Wnt family member 1 JBrowse link 7 140,464,999 140,469,046 RGD:1624291
G Zfp521 zinc finger protein 521 JBrowse link 18 5,022,042 5,315,242 RGD:1624291
RGD:1600115
neuron fate determination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdc42 cell division cycle 42 JBrowse link 5 155,690,267 155,728,385 RGD:1624291
RGD:1600115
G Fezf2 Fez family zinc finger 2 JBrowse link 15 12,825,333 12,831,496 RGD:1624291
RGD:1600115
G Foxg1 forkhead box G1 JBrowse link 6 69,971,227 69,974,037 RGD:1624291
RGD:1600115
G Lbx1 ladybird homeobox 1 JBrowse link 1 264,973,315 264,975,132 RGD:1624291
RGD:1600115
G Otx2 orthodenticle homeobox 2 JBrowse link 15 25,500,037 25,511,619 RGD:1624291
G Prrx1 paired related homeobox 1 JBrowse link 13 81,147,038 81,215,559 RGD:1624291
RGD:1600115
G Wnt1 Wnt family member 1 JBrowse link 7 140,464,999 140,469,046 RGD:1624291
RGD:1600115
neuron fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ascl1 achaete-scute family bHLH transcription factor 1 JBrowse link 7 28,038,662 28,040,504 RGD:1600115
RGD:1624291
G Dll1 delta like canonical Notch ligand 1 JBrowse link 1 57,318,621 57,326,732 RGD:1600115
RGD:1624291
G Dmrta2 DMRT-like family A2 JBrowse link 5 129,754,295 129,760,045 RGD:1624291
G Ehmt2 euchromatic histone lysine methyltransferase 2 JBrowse link 20 4,576,033 4,592,980 RGD:1624291
RGD:1600115
G Eya1 EYA transcriptional coactivator and phosphatase 1 JBrowse link 5 4,275,728 4,495,525 RGD:1624291
RGD:1600115
G Fev FEV transcription factor, ETS family member JBrowse link 9 82,142,981 82,146,855 RGD:1624291
G Foxa1 forkhead box A1 JBrowse link 6 78,516,579 78,549,669 RGD:1624291
RGD:1600115
G Foxa2 forkhead box A2 JBrowse link 3 142,383,084 142,387,493 RGD:1624291
G Gsx2 GS homeobox 2 JBrowse link 14 35,650,985 35,652,709 RGD:1624291
RGD:1600115
G Isl1 ISL LIM homeobox 1 JBrowse link 2 48,488,911 48,501,217 RGD:1624291
RGD:13792537
G Isl2 ISL LIM homeobox 2 JBrowse link 8 60,117,565 60,122,716 RGD:13792537
G Myt1l myelin transcription factor 1-like JBrowse link 6 48,452,385 48,843,443 RGD:1600115
RGD:1624291
G Nkx2-2 NK2 homeobox 2 JBrowse link 3 141,408,460 141,419,083 RGD:1624291
RGD:1600115
G Ntrk3 neurotrophic receptor tyrosine kinase 3 JBrowse link 1 139,890,537 140,262,503 RGD:2325628
G Pou3f2 POU class 3 homeobox 2 JBrowse link 5 36,677,452 36,683,356 RGD:1600115
RGD:1624291
G Pou4f1 POU class 4 homeobox 1 JBrowse link 15 88,618,255 88,622,712 RGD:1624291
RGD:1600115
G Six1 SIX homeobox 1 JBrowse link 6 95,929,060 95,934,296 RGD:1624291
RGD:1600115
G Tlx3 T-cell leukemia, homeobox 3 JBrowse link 10 18,128,869 18,131,745 RGD:1624291
RGD:1600115
noradrenergic neuron fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ascl1 achaete-scute family bHLH transcription factor 1 JBrowse link 7 28,038,662 28,040,504 RGD:1624291
RGD:1600115
Notch signaling pathway involved in arterial endothelial cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dll1 delta like canonical Notch ligand 1 JBrowse link 1 57,318,621 57,326,732 RGD:1600115
RGD:1624291
oligodendrocyte cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ascl1 achaete-scute family bHLH transcription factor 1 JBrowse link 7 28,038,662 28,040,504 RGD:1624291
oligodendrocyte cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pax6 paired box 6 JBrowse link 3 95,700,241 95,728,682 RGD:1624291
RGD:1600115
G Sox6 SRY-box transcription factor 6 JBrowse link 1 185,631,702 186,186,192 RGD:1624291
RGD:1600115
osteoblast fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Men1 menin 1 JBrowse link 1 221,704,394 221,710,343 RGD:1624291
G Runx2 RUNX family transcription factor 2 JBrowse link 9 18,564,743 18,773,092 RGD:1624291
RGD:1600115
G Sh3pxd2b SH3 and PX domains 2B JBrowse link 10 17,209,152 17,296,449 RGD:1624291
RGD:1600115
G Smad1 SMAD family member 1 JBrowse link 19 32,182,942 32,248,694 RGD:1624291
RGD:1600115
G Smad5 SMAD family member 5 JBrowse link 17 8,307,448 8,336,996 RGD:1624291
RGD:1600115
pancreatic A cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Neurod1 neuronal differentiation 1 JBrowse link 3 66,414,314 66,417,617 RGD:1624291
RGD:1600115
G Nkx2-2 NK2 homeobox 2 JBrowse link 3 141,408,460 141,419,083 RGD:1624291
RGD:1600115
pancreatic PP cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Neurod1 neuronal differentiation 1 JBrowse link 3 66,414,314 66,417,617 RGD:1624291
RGD:1600115
G Nkx2-2 NK2 homeobox 2 JBrowse link 3 141,408,460 141,419,083 RGD:1624291
RGD:1600115
paraxial mesodermal cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Foxc2 forkhead box C2 JBrowse link 19 53,044,379 53,047,081 RGD:1624291
RGD:1600115
G Wnt3a Wnt family member 3A JBrowse link 10 45,598,898 45,643,151 RGD:1624291
RGD:1600115
positive regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rbpj recombination signal binding protein for immunoglobulin kappa J region JBrowse link 14 59,657,738 59,865,427 RGD:1624291
positive regulation of cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nkx6-2 NK6 homeobox 2 JBrowse link 1 211,922,389 211,923,929 RGD:1624291
RGD:1600115
G Spdef SAM pointed domain containing ets transcription factor JBrowse link 20 7,292,823 7,308,053 RGD:1624291
RGD:1600115
positive regulation of cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fgf2 fibroblast growth factor 2 JBrowse link 2 124,081,072 124,134,133 RGD:1624291
G Gfi1 growth factor independent 1 transcriptional repressor JBrowse link 14 3,058,035 3,073,332 RGD:1624291
G Pax6 paired box 6 JBrowse link 3 95,700,241 95,728,682 RGD:729590
positive regulation of heart induction by negative regulation of canonical Wnt signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 JBrowse link 1 248,952,896 248,956,579 RGD:1624291
G Mesp1 mesoderm posterior bHLH transcription factor 1 JBrowse link 1 141,532,390 141,533,908 RGD:1624291
RGD:1600115
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wnt3a Wnt family member 3A JBrowse link 10 45,598,898 45,643,151 RGD:1624291
RGD:1600115
positive regulation of T-helper 17 cell lineage commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il23a interleukin 23 subunit alpha JBrowse link 7 2,710,609 2,712,723 RGD:1624291
RGD:13792537
regulation of cardiac cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sox17 SRY-box transcription factor 17 JBrowse link 5 14,890,318 14,895,907 RGD:1624291
RGD:1600115
regulation of cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp4 bone morphogenetic protein 4 JBrowse link 15 20,776,060 20,791,013 RGD:1600115
RGD:1624291
G Gdf3 growth differentiation factor 3 JBrowse link 4 155,417,667 155,422,014 RGD:1624291
RGD:1600115
G Pax7 paired box 7 JBrowse link 5 158,211,001 158,313,510 RGD:1624291
RGD:1600115
G Zfp157 zinc finger protein 157 JBrowse link 12 18,461,283 18,495,871 RGD:1624291
RGD:1600115
regulation of cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lmo4 LIM domain only 4 JBrowse link 2 250,218,635 250,235,435 RGD:1624291
RGD:1600115
regulation of endodermal cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 JBrowse link 1 248,952,896 248,956,579 RGD:1624291
regulation of heart induction by regulation of canonical Wnt signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pou5f1 POU class 5 homeobox 1 JBrowse link 20 3,747,231 3,751,994 RGD:1624291
regulation of inner ear auditory receptor cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Esrp1 epithelial splicing regulatory protein 1 JBrowse link 5 24,576,988 24,631,758 RGD:1600115
RGD:1624291
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmpr1a bone morphogenetic protein receptor type 1A JBrowse link 16 10,758,278 10,852,170 RGD:1624291
RGD:1600115
G Fgfr1 Fibroblast growth factor receptor 1 JBrowse link 16 71,265,390 71,319,046 RGD:1624291
RGD:1600115
regulation of mesodermal cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sox17 SRY-box transcription factor 17 JBrowse link 5 14,890,318 14,895,907 RGD:1624291
regulation of neural crest cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmpr1a bone morphogenetic protein receptor type 1A JBrowse link 16 10,758,278 10,852,170 RGD:1624291
regulation of transcription from RNA polymerase II promoter involved in definitive endodermal cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sox17 SRY-box transcription factor 17 JBrowse link 5 14,890,318 14,895,907 RGD:1624291
RGD:1600115
regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dlx1 distal-less homeobox 1 JBrowse link 3 58,164,931 58,169,521 RGD:1624291
RGD:1600115
G Dlx2 distal-less homeobox 2 JBrowse link 3 58,180,088 58,181,971 RGD:1624291
RGD:1600115
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 JBrowse link 7 2,875,898 2,905,463 RGD:1624291
RGD:1600115
regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pax6 paired box 6 JBrowse link 3 95,700,241 95,728,682 RGD:1624291
RGD:1600115
regulation of transcription from RNA polymerase II promoter involved in spinal cord association neuron specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lbx1 ladybird homeobox 1 JBrowse link 1 264,973,315 264,975,132 RGD:1624291
RGD:1600115
regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nkx6-1 NK6 homeobox 1 JBrowse link 14 9,555,264 9,562,197 RGD:1624291
RGD:1600115
G Nkx6-2 NK6 homeobox 2 JBrowse link 1 211,922,389 211,923,929 RGD:1624291
RGD:1600115
G Pax6 paired box 6 JBrowse link 3 95,700,241 95,728,682 RGD:1624291
RGD:1600115
regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Evx1 even-skipped homeobox 1 JBrowse link 4 82,370,829 82,374,313 RGD:1624291
G Nkx6-1 NK6 homeobox 1 JBrowse link 14 9,555,264 9,562,197 RGD:1624291
RGD:1600115
G Nkx6-2 NK6 homeobox 2 JBrowse link 1 211,922,389 211,923,929 RGD:1624291
RGD:1600115
G Pax6 paired box 6 JBrowse link 3 95,700,241 95,728,682 RGD:1624291
RGD:1600115
regulation of transcription involved in cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cebpb CCAAT/enhancer binding protein beta JBrowse link 3 164,424,502 164,425,933 RGD:1624291
RGD:1600115
G Chd5 chromodomain helicase DNA binding protein 5 JBrowse link 5 169,519,212 169,572,059 RGD:1600115
RGD:1624291
G Pparg peroxisome proliferator-activated receptor gamma JBrowse link 4 147,274,055 147,399,383 RGD:1624291
RGD:1600115
G Rora RAR-related orphan receptor A JBrowse link 8 75,515,886 75,616,477 RGD:1624291
RGD:1600115
G Rorc RAR-related orphan receptor C JBrowse link 2 195,612,471 195,636,797 RGD:1624291
G Zbtb7b zinc finger and BTB domain containing 7B JBrowse link 2 188,704,989 188,719,674 RGD:1600115
RGD:1624291
regulation of transcription involved in lymphatic endothelial cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nr2f2 nuclear receptor subfamily 2, group F, member 2 JBrowse link 1 131,447,671 131,465,749 RGD:1624291
RGD:1600115
G Prox1 prospero homeobox 1 JBrowse link 13 108,382,536 108,444,107 RGD:1624291
RGD:1600115
retinal rod cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Casz1 castor zinc finger 1 JBrowse link 5 165,625,119 165,777,053 RGD:1624291
Sertoli cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rara retinoic acid receptor, alpha JBrowse link 10 86,838,819 86,884,224 RGD:1624291
RGD:1600115
site-specific DNA replication termination at RTS1 barrier term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rtfdc1 replication termination factor 2 domain containing 1 JBrowse link 3 170,443,895 170,473,456 RGD:13792537
skeletal muscle satellite cell commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pax7 paired box 7 JBrowse link 5 158,211,001 158,313,510 RGD:1624291
RGD:1600115
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gli2 GLI family zinc finger 2 JBrowse link 13 34,829,021 35,049,172 RGD:1624291
G Gli3 GLI family zinc finger 3 JBrowse link 17 52,294,942 52,569,036 RGD:1624291
RGD:1600115
G Sufu SUFU negative regulator of hedgehog signaling JBrowse link 1 266,143,766 266,241,742 RGD:1624291
RGD:1600115
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gli2 GLI family zinc finger 2 JBrowse link 13 34,829,021 35,049,172 RGD:1624291
G Gli3 GLI family zinc finger 3 JBrowse link 17 52,294,942 52,569,036 RGD:1624291
RGD:1600115
G Sufu SUFU negative regulator of hedgehog signaling JBrowse link 1 266,143,766 266,241,742 RGD:1624291
RGD:1600115
spinal cord motor neuron cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hoxc10 homeo box C10 JBrowse link 7 144,577,578 144,582,802 RGD:1624291
RGD:1600115
G Hoxd10 homeo box D10 JBrowse link 3 61,614,133 61,617,342 RGD:1624291
RGD:1600115
G Isl1 ISL LIM homeobox 1 JBrowse link 2 48,488,911 48,501,217 RGD:1624291
RGD:1600115
G Isl2 ISL LIM homeobox 2 JBrowse link 8 60,117,565 60,122,716 RGD:1624291
RGD:1600115
G Lhx3 LIM homeobox 3 JBrowse link 3 3,653,861 3,662,509 RGD:1624291
RGD:1600115
G Mnx1 motor neuron and pancreas homeobox 1 JBrowse link 4 2,376,350 2,381,308 RGD:1624291
RGD:13792537
G Olig3 oligodendrocyte transcription factor 3 JBrowse link 1 14,797,766 14,799,835 RGD:1624291
RGD:1600115
spinal cord oligodendrocyte cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ascl1 achaete-scute family bHLH transcription factor 1 JBrowse link 7 28,038,662 28,040,504 RGD:1624291
RGD:1600115
G Nkx2-2 NK2 homeobox 2 JBrowse link 3 141,408,460 141,419,083 RGD:1624291
RGD:1600115
G Olig2 oligodendrocyte transcription factor 2 JBrowse link 11 31,389,514 31,392,890 RGD:1624291
RGD:1600115
stem cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sox17 SRY-box transcription factor 17 JBrowse link 5 14,890,318 14,895,907 RGD:1624291
RGD:1600115
G Sox18 SRY-box transcription factor 18 JBrowse link 3 177,177,237 177,179,039 RGD:1624291
RGD:1600115
subpallium neuron fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ascl1 achaete-scute family bHLH transcription factor 1 JBrowse link 7 28,038,662 28,040,504 RGD:1624291
RGD:1600115
G Gsx2 GS homeobox 2 JBrowse link 14 35,650,985 35,652,709 RGD:1624291
RGD:1600115
T cell lineage commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2 BCL2, apoptosis regulator JBrowse link 13 26,605,426 26,769,374 RGD:1624291
G Foxn1 forkhead box N1 JBrowse link 10 65,621,142 65,634,666 RGD:1624291
G Il7 interleukin 7 JBrowse link 2 96,427,884 96,474,979 RGD:1624291
RGD:1600115
G Prkdc protein kinase, DNA-activated, catalytic subunit JBrowse link 11 89,293,547 89,510,948 RGD:1624291
RGD:1600115
G Rag2 recombination activating 2 JBrowse link 3 91,191,837 91,200,134 RGD:1624291
RGD:1600115
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1624291
RGD:1600115
T-helper 1 cell lineage commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il4 interleukin 4 JBrowse link 10 38,963,979 38,969,531 RGD:1624291
G Mtor mechanistic target of rapamycin kinase JBrowse link 5 165,263,813 165,373,967 RGD:1600115
RGD:1624291
G Spn sialophorin JBrowse link 1 198,572,999 198,585,664 RGD:1600115
RGD:1624291
G Stat6 signal transducer and activator of transcription 6 JBrowse link 7 70,946,228 70,963,542 RGD:1624291
RGD:1600115
T-helper 17 cell lineage commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Batf basic leucine zipper ATF-like transcription factor JBrowse link 6 109,562,415 109,584,541 RGD:1600115
RGD:1624291
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:1624291
RGD:1600115
G Irf4 interferon regulatory factor 4 JBrowse link 17 34,886,746 34,905,191 RGD:1624291
RGD:1600115
G Ly9 lymphocyte antigen 9 JBrowse link 13 90,002,779 90,022,346 RGD:1624291
RGD:1600115
G Otud5 OTU deubiquitinase 5 JBrowse link X 15,471,212 15,504,372 RGD:1624291
G Slamf6 SLAM family member 6 JBrowse link 13 90,300,160 90,321,781 RGD:1624291
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:1624291
RGD:1600115
trophectodermal cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Prickle2 prickle planar cell polarity protein 2 JBrowse link 4 124,238,167 124,584,176 RGD:1624291
G Tead4 TEA domain transcription factor 4 JBrowse link 4 161,542,566 161,619,848 RGD:1624291
type B pancreatic cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nkx2-2 NK2 homeobox 2 JBrowse link 3 141,408,460 141,419,083 RGD:1624291
RGD:1600115
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ascl1 achaete-scute family bHLH transcription factor 1 JBrowse link 7 28,038,662 28,040,504 RGD:1624291
RGD:1600115
G Dll4 delta like canonical Notch ligand 4 JBrowse link 3 111,135,011 111,146,746 RGD:1624291
RGD:1600115
G Foxn4 forkhead box N4 JBrowse link 12 48,101,012 48,121,281 RGD:1624291
RGD:1600115
ventral spinal cord interneuron fate determination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nkx2-2 NK2 homeobox 2 JBrowse link 3 141,408,460 141,419,083 RGD:1624291
RGD:1600115
ventral spinal cord interneuron specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dbx1 developing brain homeobox 1 JBrowse link 1 104,969,218 104,973,648 RGD:1624291
RGD:1600115
G Dmrt3 doublesex and mab-3 related transcription factor 3 JBrowse link 1 243,589,607 243,602,926 RGD:1624291
RGD:1600115
G Lhx3 LIM homeobox 3 JBrowse link 3 3,653,861 3,662,509 RGD:1624291
RGD:1600115
G Shh sonic hedgehog signaling molecule JBrowse link 4 718,538 727,691 RGD:8553789
G Sox1 SRY-box transcription factor 1 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19245
    cellular process 17125
      cellular developmental process 4400
        cell fate commitment 282
          B cell lineage commitment + 6
          DCT cell fate commitment + 0
          T cell lineage commitment + 26
          apical cell fate commitment 0
          asymmetric neuroblast division + 6
          cardiac cell fate commitment + 14
          cell fate commitment involved in formation of primary germ layer + 31
          cell fate commitment involved in pattern specification + 16
          cell fate determination + 44
          cell fate specification + 102
          cell-cell signaling involved in cell fate commitment + 2
          compound eye cone cell fate commitment + 0
          determination of imaginal disc primordium + 0
          eosinophil fate commitment + 2
          epithelial cell fate commitment + 17
          glial cell fate commitment + 15
          guard cell fate commitment 0
          hypothalamus gonadotrophin-releasing hormone neuron fate commitment 0
          inner cell mass cell fate commitment 3
          juxtaglomerulus cell fate commitment + 0
          lens fiber cell fate commitment 0
          mating type determination + 1
          mesangial cell fate commitment + 0
          mesenchymal cell fate commitment 0
          muscle cell fate commitment + 14
          myoblast fate commitment + 4
          negative regulation of cell fate commitment + 17
          neuron fate commitment + 78
          oocyte fate commitment 0
          osteoblast fate commitment 5
          pancreatic E cell fate commitment 0
          positive regulation of cell fate commitment + 8
          pro-T cell lineage commitment 0
          proximal convoluted tubule segment 1 cell fate commitment 0
          regulation of cell fate commitment + 32
          regulation of transcription involved in cell fate commitment + 18
          renal interstitial fibroblast fate commitment + 0
          seed trichome initiation 0
          skeletal muscle satellite cell commitment + 1
          stem cell fate commitment + 7
          trophectodermal cell fate commitment 2
          vulval cell fate commitment + 0
Path 2
Term Annotations click to browse term
  biological_process 19245
    cellular process 17125
      cellular developmental process 4400
        cell differentiation 4180
          cell fate commitment 282
            B cell lineage commitment + 6
            DCT cell fate commitment + 0
            T cell lineage commitment + 26
            apical cell fate commitment 0
            asymmetric neuroblast division + 6
            cardiac cell fate commitment + 14
            cell fate commitment involved in formation of primary germ layer + 31
            cell fate commitment involved in pattern specification + 16
            cell fate determination + 44
            cell fate specification + 102
            cell-cell signaling involved in cell fate commitment + 2
            compound eye cone cell fate commitment + 0
            determination of imaginal disc primordium + 0
            eosinophil fate commitment + 2
            epithelial cell fate commitment + 17
            glial cell fate commitment + 15
            guard cell fate commitment 0
            hypothalamus gonadotrophin-releasing hormone neuron fate commitment 0
            inner cell mass cell fate commitment 3
            juxtaglomerulus cell fate commitment + 0
            lens fiber cell fate commitment 0
            mating type determination + 1
            mesangial cell fate commitment + 0
            mesenchymal cell fate commitment 0
            muscle cell fate commitment + 14
            myoblast fate commitment + 4
            negative regulation of cell fate commitment + 17
            neuron fate commitment + 78
            oocyte fate commitment 0
            osteoblast fate commitment 5
            pancreatic E cell fate commitment 0
            positive regulation of cell fate commitment + 8
            pro-T cell lineage commitment 0
            proximal convoluted tubule segment 1 cell fate commitment 0
            regulation of cell fate commitment + 32
            regulation of transcription involved in cell fate commitment + 18
            renal interstitial fibroblast fate commitment + 0
            seed trichome initiation 0
            skeletal muscle satellite cell commitment + 1
            stem cell fate commitment + 7
            trophectodermal cell fate commitment 2
            vulval cell fate commitment + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.