Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:phagocytic vesicle
go back to main search page
Accession:GO:0045335 term browser browse the term
Definition:A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis.
Synonyms:exact_synonym: phagosome
 xref: Wikipedia:Phagosome


show annotations for term's descendants       view all columns           Sort by:
 
phagocytic vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abca1 ATP-binding cassette, sub-family A (ABC1), member 1 JBrowse link 4 53,030,789 53,159,988 RGD:2290270
G Actg1 actin, gamma, cytoplasmic 1 JBrowse link 11 120,345,687 120,348,495 RGD:2290270
G Ambra1 autophagy/beclin 1 regulator 1 JBrowse link 2 91,730,138 91,918,849 RGD:2290270
G Anxa11 annexin A11 JBrowse link 14 25,842,127 25,886,804 RGD:2290270
G Atg14 autophagy related 14 JBrowse link 14 47,540,893 47,568,434 RGD:2290270
G Becn1 beclin 1, autophagy related JBrowse link 11 101,288,258 101,302,286 RGD:2290270
G Capg capping protein (actin filament), gelsolin-like JBrowse link 6 72,538,282 72,562,983 RGD:2290270
G Cdc42 cell division cycle 42 JBrowse link 4 137,319,696 137,357,759 RGD:2290270
G Cdc42ep2 CDC42 effector protein (Rho GTPase binding) 2 JBrowse link 19 5,917,556 5,924,816 RGD:2290270
G Cdc42ep4 CDC42 effector protein (Rho GTPase binding) 4 JBrowse link 11 113,726,850 113,752,543 RGD:2290270
G Clcn3 chloride channel, voltage-sensitive 3 JBrowse link 8 60,910,389 60,983,317 RGD:2290270
G Coro1a coronin, actin binding protein 1A JBrowse link 7 126,699,774 126,704,816 RGD:2290270
G Cybb cytochrome b-245, beta polypeptide JBrowse link X 9,435,252 9,487,766 RGD:2290270
G Evl Ena-vasodilator stimulated phosphoprotein JBrowse link 12 108,554,681 108,688,516 RGD:2290270
G Flnb filamin, beta JBrowse link 14 7,817,921 7,951,588 RGD:2290270
G Fmnl1 formin-like 1 JBrowse link 11 103,171,004 103,198,902 RGD:2290270
G Gsn gelsolin JBrowse link 2 35,256,359 35,307,902 RGD:2290270
G Irgm1 immunity-related GTPase family M member 1 JBrowse link 11 48,865,245 48,871,420 RGD:2290270
G Kif16b kinesin family member 16B JBrowse link 2 142,618,340 142,901,609 RGD:2290270
G Kif5b kinesin family member 5B JBrowse link 18 6,201,005 6,241,524 RGD:2290270
G Lamp1 lysosomal-associated membrane protein 1 JBrowse link 8 13,159,161 13,175,338 RGD:2290270
G Mpeg1 macrophage expressed gene 1 JBrowse link 19 12,460,698 12,465,285 RGD:2290270
G Myo18a myosin XVIIIA JBrowse link 11 77,763,240 77,865,988 RGD:2290270
G Myo1c myosin IC JBrowse link 11 75,650,519 75,674,643 RGD:2290270
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 18 30,265,615 30,348,126 RGD:2290270
G Pld4 phospholipase D family, member 4 JBrowse link 12 112,760,446 112,768,986 RGD:2290270
G Rab11a RAB11A, member RAS oncogene family JBrowse link 9 64,715,300 64,737,756 RGD:2290270
G Rab11b RAB11B, member RAS oncogene family JBrowse link 17 33,742,484 33,760,486 RGD:2290270
G Rab11fip5 RAB11 family interacting protein 5 (class I) JBrowse link 6 85,334,962 85,374,684 RGD:2290270
G Rab12 RAB12, member RAS oncogene family JBrowse link 17 66,494,512 66,519,750 RGD:2290270
G Rab14 RAB14, member RAS oncogene family JBrowse link 2 35,180,205 35,201,120 RGD:2290270
G Rab20 RAB20, member RAS oncogene family JBrowse link 8 11,453,390 11,478,640 RGD:2290270
G Rab22a RAB22A, member RAS oncogene family JBrowse link 2 173,659,836 173,702,186 RGD:2290270
G Rab23 RAB23, member RAS oncogene family JBrowse link 1 33,719,896 33,742,564 RGD:2290270
G Rab31 RAB31, member RAS oncogene family JBrowse link 17 65,651,726 65,772,752 RGD:2290270
G Rab32 RAB32, member RAS oncogene family JBrowse link 10 10,545,039 10,558,207 RGD:2290270
G Rab34 RAB34, member RAS oncogene family JBrowse link 11 78,188,427 78,192,193 RGD:2290270
G Rab38 RAB38, member RAS oncogene family JBrowse link 7 88,430,273 88,491,572 RGD:2290270
G Rab39 RAB39, member RAS oncogene family JBrowse link 9 53,684,110 53,706,232 RGD:2290270
G Rab43 RAB43, member RAS oncogene family JBrowse link 6 87,788,853 87,812,164 RGD:2290270
G Rab5a RAB5A, member RAS oncogene family JBrowse link 17 53,479,234 53,507,678 RGD:2290270
G Rab7 RAB7, member RAS oncogene family JBrowse link 6 87,999,106 88,045,270 RGD:2290270
G Rab7b RAB7B, member RAS oncogene family JBrowse link 1 131,688,681 131,715,443 RGD:2290270
G Rab8a RAB8A, member RAS oncogene family JBrowse link 8 72,161,200 72,181,366 RGD:2290270
G Rab8b RAB8B, member RAS oncogene family JBrowse link 9 66,843,609 66,919,705 RGD:2290270
G Rab9 RAB9, member RAS oncogene family JBrowse link X 166,457,251 166,479,867 RGD:2290270
G Rab9b RAB9B, member RAS oncogene family JBrowse link X 136,858,147 136,868,556 RGD:2290270
G Rap1a RAS-related protein 1a JBrowse link 3 105,727,260 105,801,394 RGD:2290270
G Scimp SLP adaptor and CSK interacting membrane protein JBrowse link 11 70,790,932 70,812,561 RGD:2290270
G Slamf1 signaling lymphocytic activation molecule family member 1 JBrowse link 1 171,767,131 171,801,184 RGD:2290270
G Srgap2 SLIT-ROBO Rho GTPase activating protein 2 JBrowse link 1 131,285,251 131,527,531 RGD:2290270
G Stx11 syntaxin 11 JBrowse link 10 12,938,217 12,964,498 RGD:2290270
G Stx12 syntaxin 12 JBrowse link 4 132,854,064 132,884,458 RGD:2290270
G Stx4a syntaxin 4A (placental) JBrowse link 7 127,840,643 127,850,988 RGD:2290270
G Stx6 syntaxin 6 JBrowse link 1 155,158,628 155,207,567 RGD:2290270
G Stx8 syntaxin 8 JBrowse link 11 67,966,411 68,207,148 RGD:2290270
G Stxbp1 syntaxin binding protein 1 JBrowse link 2 32,787,607 32,847,237 RGD:2290270
G Stxbp2 syntaxin binding protein 2 JBrowse link 8 3,630,960 3,643,998 RGD:2290270
G Stxbp3 syntaxin binding protein 3 JBrowse link 3 108,793,180 108,840,502 RGD:2290270
G Stxbp4 syntaxin binding protein 4 JBrowse link 11 90,476,492 90,638,136 RGD:2290270
G Syt11 synaptotagmin XI JBrowse link 3 88,744,699 88,775,159 RGD:2290270
G Tcirg1 T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 JBrowse link 19 3,896,050 3,907,133 RGD:2290270
G Tlr1 toll-like receptor 1 JBrowse link 5 64,924,680 64,933,600 RGD:2290270
G Tlr9 toll-like receptor 9 JBrowse link 9 106,222,598 106,226,876 RGD:2290270
G Uvrag UV radiation resistance associated gene JBrowse link 7 98,886,742 99,141,167 RGD:2290270
G Vamp3 vesicle-associated membrane protein 3 JBrowse link 4 151,047,305 151,057,953 RGD:2290270
G Vamp4 vesicle-associated membrane protein 4 JBrowse link 1 162,570,515 162,599,082 RGD:2290270
G Vamp7 vesicle-associated membrane protein 7 RGD:2290270
G Vamp8 vesicle-associated membrane protein 8 JBrowse link 6 72,385,221 72,390,667 RGD:2290270
G Vim vimentin JBrowse link 2 13,574,311 13,582,826 RGD:2290270
G Vps26b VPS26 retromer complex component B JBrowse link 9 27,004,502 27,030,094 RGD:2290270
G Was Wiskott-Aldrich syndrome JBrowse link X 8,081,466 8,090,491 RGD:2290270
G Zyx zyxin JBrowse link 6 42,349,511 42,360,213 RGD:2290270
early phagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Appl1 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1 JBrowse link 14 26,918,986 26,970,611 RGD:2290270
G Appl2 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2 JBrowse link 10 83,600,033 83,648,877 RGD:2290270
G Rab5a RAB5A, member RAS oncogene family JBrowse link 17 53,479,234 53,507,678 RGD:2290270
G Snx3 sorting nexin 3 JBrowse link 10 42,502,054 42,535,369 RGD:2290270
G Syk spleen tyrosine kinase JBrowse link 13 52,582,610 52,648,792 RGD:2290270
G Syt11 synaptotagmin XI JBrowse link 3 88,744,699 88,775,159 RGD:2290270
G Syt7 synaptotagmin VII JBrowse link 19 10,388,802 10,453,181 RGD:2290270
G Tlr7 toll-like receptor 7 JBrowse link X 167,303,380 167,330,574 RGD:2290270
G Tlr9 toll-like receptor 9 JBrowse link 9 106,222,598 106,226,876 RGD:2290270
G Unc13b unc-13 homolog B JBrowse link 4 43,046,193 43,264,873 RGD:2290270
G Unc93b1 unc-93 homolog B1, TLR signaling regulator JBrowse link 19 3,935,158 3,949,340 RGD:2290270
early phagosome membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Appl2 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2 JBrowse link 10 83,600,033 83,648,877 RGD:2290270
G Rab31 RAB31, member RAS oncogene family JBrowse link 17 65,651,726 65,772,752 RGD:2290270
phagocytic vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Anxa3 annexin A3 JBrowse link 5 96,793,385 96,845,968 RGD:2290270
G Dmbt1 deleted in malignant brain tumors 1 JBrowse link 7 131,032,057 131,121,628 RGD:2290270
G Lamp2 lysosomal-associated membrane protein 2 JBrowse link X 38,399,647 38,456,460 RGD:2290270
G Pip4p1 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 JBrowse link 14 50,927,215 50,931,010 RGD:2290270
G Pip4p2 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 JBrowse link 4 14,864,219 14,915,260 RGD:2290270
G Rapgef1 Rap guanine nucleotide exchange factor (GEF) 1 JBrowse link 2 29,619,720 29,740,364 RGD:2290270
G Slc11a1 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1 JBrowse link 1 74,375,014 74,386,057 RGD:2290270
G Tcirg1 T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 JBrowse link 19 3,896,050 3,907,133 RGD:2290270
phagolysosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adam8 a disintegrin and metallopeptidase domain 8 JBrowse link 7 139,978,932 139,995,207 RGD:2290270
phagolysosome membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hrg histidine-rich glycoprotein JBrowse link 16 22,951,072 22,961,659 RGD:2290270
G Lamp1 lysosomal-associated membrane protein 1 JBrowse link 8 13,159,161 13,175,338 RGD:2290270

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 23108
    intracellular 13697
      cytoplasm 10896
        cytoplasmic vesicle 1839
          endocytic vesicle 171
            phagocytic vesicle 90
              clathrin-coated phagocytic vesicle + 0
              early phagosome + 12
              pexophagosome 0
              phagocytic vesicle lumen + 0
              phagocytic vesicle membrane + 12
              phagolysosome + 3
Path 2
Term Annotations click to browse term
  cellular_component 23108
    cellular anatomical entity 18607
      organelle 12323
        membrane-bounded organelle 11046
          vesicle 1977
            intracellular vesicle 1844
              cytoplasmic vesicle 1839
                endocytic vesicle 171
                  phagocytic vesicle 90
                    clathrin-coated phagocytic vesicle + 0
                    early phagosome + 12
                    pexophagosome 0
                    phagocytic vesicle lumen + 0
                    phagocytic vesicle membrane + 12
                    phagolysosome + 3
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.