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ONTOLOGY REPORT - ANNOTATIONS


Term:phagocytic vesicle
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Accession:GO:0045335 term browser browse the term
Definition:A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis.
Synonyms:exact_synonym: phagosome
 xref: Wikipedia:Phagosome


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phagocytic vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABCA1 ATP binding cassette subfamily A member 1 JBrowse link 1 246,144,277 246,278,492 RGD:14298760
G AMBRA1 autophagy and beclin 1 regulator 1 JBrowse link 2 15,935,354 16,119,082 RGD:14298760
G ANXA11 annexin A11 JBrowse link 14 81,835,205 81,879,565 RGD:14298760
G ATG14 autophagy related 14 JBrowse link 1 184,701,020 184,743,752 RGD:14298760
G BECN1 beclin 1 JBrowse link 12 20,041,914 20,054,249 RGD:14298760
G CDC42EP2 CDC42 effector protein 2 JBrowse link 2 6,897,497 6,904,040 RGD:14298760
G CDC42EP4 CDC42 effector protein 4 JBrowse link 12 7,637,797 7,660,189 RGD:14298760
G CLCN3 chloride voltage-gated channel 3 JBrowse link 14 20,037,628 20,127,160 RGD:14298760
G CORO1A coronin 1A JBrowse link 3 18,336,813 18,342,381 RGD:14298760
G EVL Enah/Vasp-like JBrowse link 7 120,911,814 121,056,556 RGD:14298760
G FLNB filamin B JBrowse link 13 39,789,259 39,938,751 RGD:14298760
G FMNL1 formin like 1 JBrowse link 12 18,198,764 18,225,621 RGD:14298760
G GSN gelsolin JBrowse link 1 261,295,711 261,372,848 RGD:14298760
G KIF5B kinesin family member 5B JBrowse link 10 42,637,105 42,693,551 RGD:14298760
G MYO1C myosin IC JBrowse link 12 47,691,252 47,715,670 RGD:14298760
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 6 125,890,598 126,038,753 RGD:14298760
G PLD4 phospholipase D family member 4 RGD:14298760
G RAB11A RAB11A, member RAS oncogene family JBrowse link 1 163,858,254 163,887,741 RGD:14298760
G RAB11B RAB11B, member RAS oncogene family JBrowse link 2 70,884,457 70,896,169 RGD:14298760
G RAB12 RAB12, member RAS oncogene family JBrowse link 6 99,216,225 99,244,627 RGD:14298760
G RAB14 RAB14, member RAS oncogene family JBrowse link 1 261,228,112 261,256,913 RGD:14298760
G RAB20 RAB20, member RAS oncogene family JBrowse link 11 77,167,052 77,188,893 RGD:14298760
G RAB22A RAB22A, member RAS oncogene family JBrowse link 17 58,514,985 58,572,421 RGD:14298760
G RAB23 RAB23, member RAS oncogene family JBrowse link 7 28,632,065 28,658,958 RGD:14298760
G RAB31 RAB31, member RAS oncogene family JBrowse link 6 98,278,644 98,385,857 RGD:14298760
G RAB32 RAB32, member RAS oncogene family JBrowse link 1 19,076,301 19,097,647 RGD:14298760
G RAB34 RAB34, member RAS oncogene family JBrowse link 12 44,951,989 44,956,458 RGD:14298760
G RAB38 RAB38, member RAS oncogene family JBrowse link 9 21,577,083 21,640,637 RGD:14298760
G RAB39A RAB39A, member RAS oncogene family JBrowse link 9 36,341,339 36,403,690 RGD:14298760
G RAB43 RAB43, member RAS oncogene family JBrowse link 13 71,564,250 71,596,318 RGD:14298760
G RAB5A RAB5A, member RAS oncogene family JBrowse link 13 6,905,302 6,940,165 RGD:14298760
G RAB7A RAB7A, member RAS oncogene family JBrowse link 13 71,777,422 71,886,758 RGD:14298760
G RAB7B RAB7B, member RAS oncogene family JBrowse link 9 66,635,636 66,666,034 RGD:14298760
G RAB8A RAB8A, member RAS oncogene family JBrowse link 2 61,430,680 61,450,351 RGD:14298760
G RAB8B RAB8B, member RAS oncogene family JBrowse link 1 108,772,851 108,840,222 RGD:14298760
G RAB9A RAB9A, member RAS oncogene family JBrowse link X 10,328,085 10,349,399 RGD:14298760
G RAB9B RAB9B, member RAS oncogene family JBrowse link X 84,721,269 84,733,000 RGD:14298760
G SCIMP SLP adaptor and CSK interacting membrane protein JBrowse link 12 51,772,635 51,794,107 RGD:14298760
G SLAMF1 signaling lymphocytic activation molecule family member 1 JBrowse link 4 89,870,359 89,907,114 RGD:14298760
G SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 JBrowse link 9 66,838,062 67,117,315 RGD:14298760
G STX12 syntaxin 12 JBrowse link 6 84,918,827 84,960,235 RGD:14298760
G STX4 syntaxin 4 JBrowse link 3 17,422,266 17,431,377 RGD:14298760
G STX6 syntaxin 6 JBrowse link 9 122,533,737 122,580,631 RGD:14298760
G STX8 syntaxin 8 JBrowse link 12 54,296,988 54,544,668 RGD:14298760
G STXBP1 syntaxin binding protein 1 JBrowse link 1 268,116,124 268,205,805 RGD:14298760
G STXBP2 syntaxin binding protein 2 JBrowse link 2 71,504,575 71,513,446 RGD:14298760
G STXBP4 syntaxin binding protein 4 JBrowse link 12 31,277,116 31,478,828 RGD:14298760
G UVRAG UV radiation resistance associated JBrowse link 9 10,088,779 10,370,857 RGD:14298760
G VAMP7 vesicle associated membrane protein 7 JBrowse link X 125,863,266 125,917,232 RGD:14298760
G VIM vimentin JBrowse link 10 43,516,441 43,526,172 RGD:14298760
G VPS26B VPS26, retromer complex component B JBrowse link 9 60,786,192 60,802,507 RGD:14298760
G WAS WASP actin nucleation promoting factor JBrowse link X 42,774,597 42,793,055 RGD:14298760
G ZYX zyxin JBrowse link 18 6,861,072 6,870,256 RGD:14298760
early phagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G APPL1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 JBrowse link 13 39,089,157 39,124,969 RGD:14298760
G PRPS2 phosphoribosyl pyrophosphate synthetase 2 JBrowse link X 9,505,034 9,531,044 RGD:14298760
G RAB5A RAB5A, member RAS oncogene family JBrowse link 13 6,905,302 6,940,165 RGD:14298760
G SNX3 sorting nexin 3 JBrowse link 1 74,306,450 74,349,735 RGD:14298760
G SYK spleen associated tyrosine kinase JBrowse link 14 2,103,706 2,160,886 RGD:14298760
G SYT11 synaptotagmin 11 JBrowse link 4 94,139,345 94,163,091 RGD:14298760
G SYT7 synaptotagmin 7 JBrowse link 2 9,947,962 10,012,713 RGD:14298760
G TLR9 toll like receptor 9 JBrowse link 13 34,353,444 34,370,990 RGD:14298760
phagocytic vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LAMP2 lysosomal associated membrane protein 2 JBrowse link X 98,586,718 98,623,939 RGD:14298760
G PIP4P1 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 JBrowse link 7 78,447,323 78,451,761 RGD:14298760
G PIP4P2 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 JBrowse link 4 45,825,415 45,891,192 RGD:14298760
G RAB32 RAB32, member RAS oncogene family JBrowse link 1 19,076,301 19,097,647 RGD:14298760
G RAB34 RAB34, member RAS oncogene family JBrowse link 12 44,951,989 44,956,458 RGD:14298760
G RAB5A RAB5A, member RAS oncogene family JBrowse link 13 6,905,302 6,940,165 RGD:14298760
G SLC11A1 solute carrier family 11 member 1 JBrowse link 15 120,434,100 120,446,396 RGD:14298760
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 JBrowse link 2 4,844,627 4,860,562 RGD:14298760
phagolysosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADAM8 ADAM metallopeptidase domain 8 JBrowse link 14 141,221,177 141,233,728 RGD:14298760
phagolysosome membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LAMP1 lysosomal associated membrane protein 1 JBrowse link 11 78,600,818 78,617,587 RGD:14298760

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 14676
    intracellular 10251
      cytoplasm 7357
        cytoplasmic vesicle 1107
          endocytic vesicle 117
            phagocytic vesicle 67
              clathrin-coated phagocytic vesicle + 0
              early phagosome + 8
              pexophagosome 0
              phagocytic vesicle lumen + 0
              phagocytic vesicle membrane + 9
              phagolysosome + 2
Path 2
Term Annotations click to browse term
  cellular_component 14676
    cellular anatomical entity 14529
      organelle 9206
        membrane-bounded organelle 8091
          vesicle 1189
            intracellular vesicle 1110
              cytoplasmic vesicle 1107
                endocytic vesicle 117
                  phagocytic vesicle 67
                    clathrin-coated phagocytic vesicle + 0
                    early phagosome + 8
                    pexophagosome 0
                    phagocytic vesicle lumen + 0
                    phagocytic vesicle membrane + 9
                    phagolysosome + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.