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ONTOLOGY REPORT - ANNOTATIONS


Term:farnesyl diphosphate metabolic process
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Accession:GO:0045338 term browser browse the term
Definition:The chemical reactions and pathways involving farnesyl diphosphate, an intermediate in carotenoid, sesquiterpene, squalene and sterol biosynthesis, as well as a substrate in protein farnesylation.
Synonyms:exact_synonym: farnesyl diphosphate metabolism


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farnesyl diphosphate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fdft1 farnesyl diphosphate farnesyl transferase 1 JBrowse link 15 46,339,248 46,367,302 RGD:1626611
RGD:13792537
farnesyl diphosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fdps farnesyl diphosphate synthase JBrowse link 2 188,403,595 188,413,219 RGD:2316305
RGD:13792537
RGD:1600115
G Ggps1 geranylgeranyl diphosphate synthase 1 JBrowse link 17 53,956,185 53,971,039 RGD:1600115
farnesyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase JBrowse link 2 27,480,224 27,500,654 RGD:1300058
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 JBrowse link 2 52,427,351 52,445,082 RGD:13792537
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 JBrowse link 2 200,452,623 200,480,785 RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19578
    cellular process 18362
      cellular metabolic process 10737
        cellular lipid metabolic process 1025
          phospholipid metabolic process 389
            farnesyl diphosphate metabolic process 6
              farnesyl diphosphate biosynthetic process + 5
              farnesyl diphosphate catabolic process 0
Path 2
Term Annotations click to browse term
  biological_process 19578
    metabolic process 11901
      primary metabolic process 10563
        lipid metabolic process 1343
          cellular lipid metabolic process 1025
            isoprenoid metabolic process 114
              terpenoid metabolic process 88
                farnesyl diphosphate metabolic process 6
                  farnesyl diphosphate biosynthetic process + 5
                  farnesyl diphosphate catabolic process 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.