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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of transcription by RNA polymerase I
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Accession:GO:0045943 term browser browse the term
Definition:Any process that activates or increases the frequency, rate or extent of transcription mediated by RNA polymerase I.
Synonyms:exact_synonym: positive regulation of transcription from Pol I promoter;   positive regulation of transcription from RNA polymerase I promoter;   up regulation of transcription from RNA polymerase I promoter;   upregulation of transcription from RNA polymerase I promoter
 narrow_synonym: activation of transcription from RNA polymerase I promoter;   stimulation of transcription from RNA polymerase I promoter


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positive regulation of transcription by RNA polymerase I term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf4 activating transcription factor 4 ISO (PMID:22915762) RGD PMID:22915762 NCBI chr 7:121,480,723...121,482,781
Ensembl chr 7:121,480,723...121,482,772
JBrowse link
G Bnc1 basonuclin 1 ISO (PMID:11152639) RGD PMID:11152639 NCBI chr 1:143,793,280...143,818,748
NCBI chr 1:143,869,440...143,878,077
Ensembl chr 1:143,793,064...143,818,706
JBrowse link
G Dhx33 DEAH-box helicase 33 ISO
IBA
(PMID:21930779)
PMID:21873635
(MGI:MGI:5300123|PMID:21930779)
RGD PMID:21930779, PMID:21873635 MGI:MGI:5300123, RGD:13792537 NCBI chr10:57,622,022...57,638,485
Ensembl chr10:57,622,022...57,638,485
JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 ISO (PMID:22915762)
(MGI:MGI:5607215|PMID:22915762)
RGD PMID:22915762 MGI:MGI:5607215 NCBI chr 4:98,648,513...98,709,695
Ensembl chr 4:98,648,545...98,709,694
JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 ISO
ISS
(PMID:21555369)
GO_REF:0000024
RGD
UniProt
PMID:21555369 GO_REF:0000024 NCBI chr10:86,367,596...86,391,728
Ensembl chr10:86,367,596...86,391,728
JBrowse link
G Heatr1 HEAT repeat containing 1 ISO
IBA
(PMID:17699751)
PMID:21873635
RGD PMID:17699751, PMID:21873635 RGD:13792537 NCBI chr17:66,446,135...66,488,303
Ensembl chr17:66,446,162...66,619,250
JBrowse link
G LOC108348069 HEAT repeat-containing protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:66,578,885...66,619,465
Ensembl chr17:66,446,162...66,619,250
JBrowse link
G Phf8 PHD finger protein 8 ISO (PMID:20208542) RGD PMID:20208542 NCBI chr  X:21,063,487...21,168,750
Ensembl chr  X:21,063,562...21,168,750
JBrowse link
G Ppp1r15a protein phosphatase 1, regulatory subunit 15A ISO (MGI:MGI:5751679|PMID:14635196) RGD PMID:14635196 MGI:MGI:5751679 NCBI chr 1:101,511,899...101,515,043
Ensembl chr 1:101,511,901...101,514,974
JBrowse link
G Rasl11a RAS-like family 11 member A ISO
ISS
(MGI:MGI:4441017|PMID:20168301)
GO_REF:0000024
RGD
UniProt
PMID:20168301 GO_REF:0000024, MGI:MGI:4441017 NCBI chr12:9,986,150...9,990,284
Ensembl chr12:9,985,928...9,990,284
JBrowse link
G Ubtf upstream binding transcription factor ISO
ISS
(MGI:MGI:4441017|PMID:20168301)
GO_REF:0000024
RGD
UniProt
PMID:20168301 GO_REF:0000024, MGI:MGI:4441017 NCBI chr10:90,250,275...90,265,772
Ensembl chr10:90,250,275...90,265,017
JBrowse link
G Utp15 UTP15, small subunit processome component ISO
IBA
(PMID:17699751)
PMID:21873635
RGD PMID:17699751, PMID:21873635 RGD:13792537 NCBI chr 2:28,351,925...28,370,315
Ensembl chr 2:28,353,854...28,370,261
JBrowse link
G Wdr43 WD repeat domain 43 ISO (PMID:17699751) RGD PMID:17699751 NCBI chr 6:23,433,532...23,473,179
Ensembl chr 6:23,433,532...23,473,169
JBrowse link
G Wdr75 WD repeat domain 75 ISO (PMID:17699751) RGD PMID:17699751 NCBI chr 9:52,687,845...52,717,808
Ensembl chr 9:52,687,868...52,717,809
JBrowse link
positive regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx11 DEAD/H-box helicase 11 ISO (PMID:26089203) RGD PMID:26089203 NCBI chr 9:114,113,642...114,133,908
Ensembl chr 9:114,111,580...114,132,492
JBrowse link
G Ippk inositol-pentakisphosphate 2-kinase IEA
ISO
GO_REF:0000107
(PMID:23203802)
Ensembl
RGD
PMID:23203802 GO_REF:0000107 NCBI chr17:15,604,148...15,643,312
Ensembl chr17:15,604,145...15,643,489
JBrowse link
G Mars1 methionyl-tRNA synthetase 1 ISO (PMID:10791971) RGD PMID:10791971 NCBI chr 7:70,585,011...70,602,425
Ensembl chr 7:70,585,013...70,602,310
JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO (PMID:24036451) RGD PMID:24036451 NCBI chr 5:165,263,813...165,373,967
Ensembl chr 5:165,263,800...165,373,967
JBrowse link
G Ncl nucleolin IEA
ISO
GO_REF:0000107
(PMID:24071584)
Ensembl
RGD
PMID:24071584 GO_REF:0000107 NCBI chr 9:93,369,119...93,377,643
Ensembl chr 9:93,368,932...93,377,643
JBrowse link
G Nol11 nucleolar protein 11 ISO (PMID:22916032) RGD PMID:22916032 NCBI chr10:95,388,223...95,408,053
Ensembl chr10:95,388,888...95,407,997
JBrowse link
G Pih1d1 PIH1 domain containing 1 ISO UniProtKB:P42345|UniProtKB:Q12824 (PMID:22368283), (PMID:24036451) RGD PMID:22368283, PMID:24036451 NCBI chr 1:101,151,240...101,156,806
Ensembl chr 1:101,152,734...101,156,805
JBrowse link
G Pwp1 PWP1 homolog, endonuclein ISO (PMID:29065309) RGD PMID:29065309 NCBI chr 7:23,988,776...24,004,774
Ensembl chr 7:23,988,776...24,004,774
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO
IEA
(PMID:22368283)
GO_REF:0000107
RGD
Ensembl
PMID:22368283 GO_REF:0000107 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 ISO UniProtKB:Q9NWS0 (PMID:22368283) RGD PMID:22368283 NCBI chr20:13,679,955...13,702,821
Ensembl chr20:13,680,716...13,704,931
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      positive regulation of metabolic process 4083
        positive regulation of macromolecule metabolic process 3765
          positive regulation of gene expression 2524
            positive regulation of transcription, DNA-templated 1698
              positive regulation of transcription by RNA polymerase I 24
                positive regulation of termination of RNA polymerase I transcription 0
                positive regulation of transcription elongation from RNA polymerase I promoter 0
                positive regulation of transcription of nucleolar large rRNA by RNA polymerase I 10
Path 2
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      cellular metabolic process 11065
        cellular aromatic compound metabolic process 5708
          nucleobase-containing compound metabolic process 5483
            nucleic acid metabolic process 4980
              RNA metabolic process 4470
                regulation of RNA metabolic process 3616
                  regulation of RNA biosynthetic process 3343
                    regulation of nucleic acid-templated transcription 3338
                      regulation of transcription, DNA-templated 3289
                        positive regulation of transcription, DNA-templated 1698
                          positive regulation of transcription by RNA polymerase I 24
                            positive regulation of termination of RNA polymerase I transcription 0
                            positive regulation of transcription elongation from RNA polymerase I promoter 0
                            positive regulation of transcription of nucleolar large rRNA by RNA polymerase I 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.