Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:nucleobase catabolic process
go back to main search page
Accession:GO:0046113 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a nucleobase, a nitrogenous base that is a constituent of a nucleic acid.
Synonyms:exact_synonym: nucleobase breakdown;   nucleobase catabolism;   nucleobase degradation


show annotations for term's descendants           Sort by:
 
guanine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gda guanine deaminase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:238,982,542...239,057,663
Ensembl chr 1:238,982,392...239,057,732
JBrowse link
hypoxanthine oxidation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xdh xanthine dehydrogenase IDA RGD PMID:232638 RGD:13210503 NCBI chr 6:25,149,570...25,211,273
Ensembl chr 6:25,149,235...25,211,494
JBrowse link
purine nucleobase catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase ISO
IEA
(PMID:11988088)
GO_REF:0000107
RGD
Ensembl
PMID:11988088 GO_REF:0000107 NCBI chr 2:221,823,692...222,694,627
Ensembl chr 2:221,823,687...222,694,627
JBrowse link
G Uox urate oxidase TAS RGD PMID:3182808 RGD:730101 NCBI chr 2:252,452,282...252,488,497
Ensembl chr 2:252,452,269...252,488,396
JBrowse link
pyrimidine nucleobase catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crmp1 collapsin response mediator protein 1 NOT IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:78,266,931...78,312,777
Ensembl chr14:78,266,931...78,308,933
JBrowse link
G Dpyd dihydropyrimidine dehydrogenase IDA
ISO
(PMID:11988088)
(MGI:MGI:2657070|PMID:12651209)
RGD PMID:11988088, PMID:12651209, PMID:1629785 MGI:MGI:2657070, RGD:1599794 NCBI chr 2:221,823,692...222,694,627
Ensembl chr 2:221,823,687...222,694,627
JBrowse link
G Dpys dihydropyrimidinase ISO
IBA
(PMID:9718352)
PMID:21873635
RGD PMID:9718352, PMID:21873635 RGD:13792537 NCBI chr 7:78,769,918...78,847,941
Ensembl chr 7:78,769,807...78,847,974
JBrowse link
G Dpysl2 dihydropyrimidinase-like 2 NOT IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:43,475,640...43,581,725
Ensembl chr15:43,477,629...43,542,939
JBrowse link
G Dpysl3 dihydropyrimidinase-like 3 NOT IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:37,716,371...37,819,347
Ensembl chr18:37,716,143...37,819,097
JBrowse link
G Dpysl4 dihydropyrimidinase-like 4 NOT IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:211,423,022...211,438,533
Ensembl chr 1:211,423,022...211,438,531
JBrowse link
G Dpysl5 dihydropyrimidinase-like 5 NOT IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:26,939,696...27,024,129
Ensembl chr 6:26,939,697...27,024,129
JBrowse link
G LOC103692570 dihydropyrimidinase-related protein 5-like NOT IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:26,423,841...26,446,080
Ensembl chr 6:26,426,869...26,445,787
JBrowse link
thymine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh6a1 aldehyde dehydrogenase 6 family, member A1 IDA
IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:23835272)
Ensembl
RGD
PMID:23835272, PMID:2768248, PMID:21873635 GO_REF:0000107, RGD:1599052, RGD:13792537 NCBI chr 6:108,146,552...108,167,185
Ensembl chr 6:108,146,582...108,167,185
JBrowse link
G Dpyd dihydropyrimidine dehydrogenase ISO
IBA
IEA
(PMID:10410956)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:10410956, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 2:221,823,692...222,694,627
Ensembl chr 2:221,823,687...222,694,627
JBrowse link
G Dpys dihydropyrimidinase IDA PMID:8307005 UniProt PMID:8307005 RGD:1624990 NCBI chr 7:78,769,918...78,847,941
Ensembl chr 7:78,769,807...78,847,974
JBrowse link
uracil catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase ISS
IBA
IEA
ISO
GO_REF:0000024
PMID:21873635
GO_REF:0000107
(PMID:1512248), (PMID:18075467)
UniProt
Ensembl
RGD
PMID:1512248, PMID:18075467, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 2:221,823,692...222,694,627
Ensembl chr 2:221,823,687...222,694,627
JBrowse link
G Dpys dihydropyrimidinase IDA
ISO
PMID:8307005
(PMID:10410956), (PMID:18075467)
RGD PMID:10410956, PMID:18075467, PMID:8307005 RGD:1624990 NCBI chr 7:78,769,918...78,847,941
Ensembl chr 7:78,769,807...78,847,974
JBrowse link
xanthine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aox1 aldehyde oxidase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:64,929,682...65,007,872
Ensembl chr 9:64,929,721...65,007,870
JBrowse link
G Aox2 aldehyde oxidase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:65,175,455...65,265,149
Ensembl chr 9:65,177,511...65,265,149
JBrowse link
G Aox3 aldehyde oxidase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:65,013,831...65,099,433
Ensembl chr 9:65,013,862...65,099,433
JBrowse link
G Aox4 aldehyde oxidase 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:65,110,330...65,167,188
Ensembl chr 9:65,110,325...65,167,192
JBrowse link
G Xdh xanthine dehydrogenase IDA
IEA
ISS
ISO
IBA
PMID:15878860
GO_REF:0000107
GO_REF:0000024
(PMID:17301077), (PMID:8670112)
PMID:21873635
Ensembl
UniProt
RGD
PMID:8670112, PMID:17301077, PMID:15878860, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:8553512, RGD:13792537 NCBI chr 6:25,149,570...25,211,273
Ensembl chr 6:25,149,235...25,211,494
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      organic substance metabolic process 11636
        organonitrogen compound metabolic process 7132
          nucleobase metabolic process 49
            nucleobase catabolic process 16
              purine nucleobase catabolic process + 8
              pyrimidine nucleobase catabolic process + 9
Path 2
Term Annotations click to browse term
  biological_process 20014
    cellular process 18788
      cellular metabolic process 11065
        cellular nitrogen compound metabolic process 6683
          nucleobase-containing compound metabolic process 5483
            nucleobase-containing small molecule metabolic process 590
              nucleobase metabolic process 49
                nucleobase catabolic process 16
                  purine nucleobase catabolic process + 8
                  pyrimidine nucleobase catabolic process + 9
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.