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ONTOLOGY REPORT - ANNOTATIONS


Term:purine ribonucleoside biosynthetic process
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Accession:GO:0046129 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of any purine ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule.
Synonyms:exact_synonym: purine ribonucleoside anabolism;   purine ribonucleoside biosynthesis;   purine ribonucleoside formation;   purine ribonucleoside synthesis


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adenosine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5e 5' nucleotidase, ecto ISO
IEA
MGI:MGI:3522017 (MGI:MGI:3770326|PMID:16547283)
GO_REF:0000107
RGD
Ensembl
PMID:16547283 GO_REF:0000107, MGI:MGI:3770326 NCBI chr 8:95,969,002...96,012,733
Ensembl chr 8:95,968,652...96,012,696
JBrowse link
GDP biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 IDA RGD PMID:4307347 RGD:5147877 NCBI chr10:45,535,617...45,552,455
Ensembl chr10:45,535,627...45,543,897
JBrowse link
GMP biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gmps guanine monophosphate synthase IDA
ISO
IBA
IEA
(PMID:8089153)
PMID:21873635
GO_REF:0000104
GO_REF:0000002
GO_REF:0000041
RGD
UniProt
InterPro
PMID:8089153, PMID:3436958, PMID:21873635 GO_REF:0000002, GO_REF:0000041, GO_REF:0000104, RGD:1599004, RGD:13792537 NCBI chr 2:154,555,967...154,590,662
Ensembl chr 2:154,555,871...154,590,662
JBrowse link
G Impdh1 inosine monophosphate dehydrogenase 1 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 4:56,478,383...56,493,987
Ensembl chr 4:56,478,384...56,493,923
JBrowse link
G Impdh2 inosine monophosphate dehydrogenase 2 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:117,346,983...117,351,619
Ensembl chr 8:117,347,029...117,351,610
JBrowse link
GMP salvage term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hprt1 hypoxanthine phosphoribosyltransferase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:158,196,640...158,228,815
Ensembl chr  X:158,197,149...158,228,749
JBrowse link
G LOC103689983 hypoxanthine-guanine phosphoribosyltransferase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:158,623,231...158,655,277
Ensembl chr  X:158,623,240...158,655,198
JBrowse link
GTP biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Decr2 2,4-dienoyl-CoA reductase 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,451,850...15,460,227
Ensembl chr10:15,431,638...15,465,413
JBrowse link
G Impdh1 inosine monophosphate dehydrogenase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:56,478,383...56,493,987
Ensembl chr 4:56,478,384...56,493,923
JBrowse link
G Impdh2 inosine monophosphate dehydrogenase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:117,346,983...117,351,619
Ensembl chr 8:117,347,029...117,351,610
JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:81,657,152...81,666,542
Ensembl chr10:81,657,153...81,666,523
JBrowse link
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 IDA RGD PMID:1316151 RGD:729254 NCBI chr10:81,648,216...81,653,717
Ensembl chr10:81,648,216...81,653,717
JBrowse link
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:14,258,232...14,259,365
Ensembl chr10:14,258,380...14,259,336
JBrowse link
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,461,567...15,465,422
Ensembl chr10:15,431,638...15,465,413
JBrowse link
G Nme5 NME/NM23 family member 5 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:27,357,460...27,374,641
Ensembl chr18:27,357,413...27,374,603
JBrowse link
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:117,920,912...117,928,148
Ensembl chr 8:117,920,944...117,928,195
JBrowse link
G Nme7 NME/NM23 family member 7 IEA GO_REF:0000002
GO_REF:0000104
InterPro
UniProt
GO_REF:0000002, GO_REF:0000104 NCBI chr13:82,607,844...82,737,383
Ensembl chr13:82,626,685...82,737,343
JBrowse link
inosine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISO
IBA
ISS
(PMID:8894685)
PMID:21873635
MGI:MGI:1857117|MGI:MGI:2681791|MGI:MGI:2683027 (MGI:MGI:1095761|PMID:9272950), (MGI:MGI:3531253|PMID:8663040), (MGI:MGI:3640719|PMID:10720488), (MGI:MGI:3808984|PMID:2015347), (MGI:MGI:4835158|PMID:8672487), (MGI:MGI:49990|PMID:1618849), (MGI:MGI:72798|PMID:7731963), (MGI:MGI:76875|PMID:7592575), (MGI:MGI:83255|PMID:8894685)
GO_REF:0000024
RGD
UniProt
PMID:1618849, PMID:2015347, PMID:7592575, PMID:7731963, PMID:8663040, PMID:8672487, PMID:8894685, PMID:9272950, PMID:10720488, PMID:21873635 GO_REF:0000024, MGI:MGI:1095761, MGI:MGI:3531253, MGI:MGI:3640719, MGI:MGI:3808984, MGI:MGI:4835158, MGI:MGI:49990, MGI:MGI:72798, MGI:MGI:76875, MGI:MGI:83255, RGD:13792537 NCBI chr 3:160,115,840...160,139,947
Ensembl chr 3:160,115,842...160,139,947
JBrowse link
G Adal adenosine deaminase-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:113,091,696...113,109,841
Ensembl chr 3:113,102,090...113,108,654
JBrowse link
G Ak1 adenylate kinase 1 IDA RGD PMID:19049516 RGD:5134369 NCBI chr 3:11,652,143...11,659,135 JBrowse link
purine ribonucleoside salvage term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase NAS
IEA
ISO
GO_REF:0000043
GO_REF:0000107
(MGI:MGI:3027665|PMID:14736855)
UniProt
Ensembl
RGD
PMID:14736855, PMID:8917457 GO_REF:0000043, GO_REF:0000107, MGI:MGI:3027665, RGD:631740 NCBI chr15:3,033,535...3,435,888
Ensembl chr15:3,033,495...3,435,888
JBrowse link
G Aprt adenine phosphoribosyl transferase ISO MGI:MGI:96217 (MGI:MGI:52624|PMID:8485579) RGD PMID:8485579 MGI:MGI:52624 NCBI chr19:55,387,288...55,389,256
Ensembl chr19:55,387,288...55,389,256
JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 ISO
IBA
(PMID:9824441)
PMID:21873635
MGI:MGI:1857299|MGI:MGI:88061 (MGI:MGI:1331314|PMID:10037486), (MGI:MGI:2675193|PMID:12944494), (MGI:MGI:52624|PMID:8485579), (MGI:MGI:60112|PMID:8492116)
RGD PMID:8485579, PMID:8492116, PMID:9824441, PMID:10037486, PMID:12944494, PMID:21873635 MGI:MGI:1331314, MGI:MGI:2675193, MGI:MGI:52624, MGI:MGI:60112, RGD:13792537 NCBI chr  X:158,196,640...158,228,815
Ensembl chr  X:158,197,149...158,228,749
JBrowse link
G LOC103689983 hypoxanthine-guanine phosphoribosyltransferase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:158,623,231...158,655,277
Ensembl chr  X:158,623,240...158,655,198
JBrowse link
G Mtap methylthioadenosine phosphorylase IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:107,711,077...107,777,530
Ensembl chr 5:107,711,077...107,777,530
JBrowse link
G Prtfdc1 phosphoribosyl transferase domain containing 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:87,926,242...88,037,040
Ensembl chr17:87,927,058...88,037,040
JBrowse link
S-adenosylmethioninamine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amd1 adenosylmethionine decarboxylase 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr20:45,384,000...45,399,694
Ensembl chr20:45,384,000...45,399,694
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20017
    metabolic process 12256
      small molecule metabolic process 1869
        nucleobase-containing small molecule metabolic process 590
          nucleoside metabolic process 93
            nucleoside biosynthetic process 24
              purine nucleoside biosynthetic process 23
                purine ribonucleoside biosynthetic process 23
                  S-adenosylmethioninamine biosynthetic process 1
                  adenosine biosynthetic process + 1
                  guanosine-containing compound biosynthetic process + 14
                  inosine biosynthetic process + 3
                  purine ribonucleoside salvage + 6
                  puromycin biosynthetic process 0
                  xanthosine biosynthetic process 0
Path 2
Term Annotations click to browse term
  biological_process 20017
    metabolic process 12256
      cellular metabolic process 11064
        heterocycle metabolic process 5634
          nucleobase-containing compound metabolic process 5483
            nucleobase-containing small molecule metabolic process 590
              nucleoside metabolic process 93
                nucleoside biosynthetic process 24
                  ribonucleoside biosynthetic process 24
                    purine ribonucleoside biosynthetic process 23
                      S-adenosylmethioninamine biosynthetic process 1
                      adenosine biosynthetic process + 1
                      guanosine-containing compound biosynthetic process + 14
                      inosine biosynthetic process + 3
                      purine ribonucleoside salvage + 6
                      puromycin biosynthetic process 0
                      xanthosine biosynthetic process 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.