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ONTOLOGY REPORT - ANNOTATIONS


Term:alcohol biosynthetic process
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Accession:GO:0046165 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom.
Synonyms:exact_synonym: alcohol anabolism;   alcohol biosynthesis;   alcohol formation;   alcohol synthesis


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aldosterone biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cacna1h calcium voltage-gated channel subunit alpha1 H JBrowse link NW_004955442 16,047,965 16,108,862 RGD:9068941
calcitriol biosynthetic process from calciol term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC102004889 sterol 26-hydroxylase, mitochondrial JBrowse link NW_004955453 14,601,495 14,647,383 RGD:9068941
G LOC102011841 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial JBrowse link NW_004955458 5,472,404 5,477,001 RGD:9068941
G LOC102024786 vitamin D 25-hydroxylase JBrowse link NW_004955414 29,929,130 29,948,151 RGD:9068941
cholesterol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acaa2 acetyl-CoA acyltransferase 2 JBrowse link NW_004955402 34,857,317 34,885,169 RGD:9068941
G Acat2 acetyl-CoA acetyltransferase 2 JBrowse link NW_004955439 21,123,886 21,142,562 RGD:9068941
G Acly ATP citrate lyase JBrowse link NW_004955451 16,058,916 16,091,831 RGD:9068941
G Apoa1 apolipoprotein A1 JBrowse link NW_004955412 18,170,331 18,172,298 RGD:9068941
G Apoa4 apolipoprotein A4 JBrowse link NW_004955412 18,158,095 18,160,636 RGD:9068941
G Apoa5 apolipoprotein A5 JBrowse link NW_004955412 18,128,861 18,131,752 RGD:9068941
G Arv1 ARV1 homolog, fatty acid homeostasis modulator JBrowse link NW_004955492 7,669,956 7,683,293 RGD:9068941
G Cftr CF transmembrane conductance regulator JBrowse link NW_004955432 23,179,645 23,328,347 RGD:9068941
G Cnbp CCHC-type zinc finger nucleic acid binding protein JBrowse link NW_004955429 13,537,222 13,582,026 RGD:9068941
G Dhcr24 24-dehydrocholesterol reductase JBrowse link NW_004955464 4,533,928 4,557,893 RGD:9068941
G Dhcr7 7-dehydrocholesterol reductase JBrowse link NW_004955422 15,119,155 15,136,771 RGD:9068941
G Ebp EBP cholestenol delta-isomerase JBrowse link NW_004955543 92,553 98,370 RGD:9068941
G Fdft1 farnesyl-diphosphate farnesyltransferase 1 JBrowse link NW_004955403 53,068,011 53,081,499 RGD:9068941
G Fdps farnesyl diphosphate synthase JBrowse link NW_004955545 1,757,090 1,765,028 RGD:9068941
G G6pd glucose-6-phosphate dehydrogenase JBrowse link NW_004955580 1,045,294 1,058,129 RGD:9068941
G Ggps1 geranylgeranyl diphosphate synthase 1 JBrowse link NW_004955492 4,582,998 4,593,194 RGD:9068941
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase JBrowse link NW_004955425 25,362,165 25,380,611 RGD:9068941
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 JBrowse link NW_004955446 18,978,261 18,996,794 RGD:9068941
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 JBrowse link NW_004955435 22,804,484 22,820,807 RGD:9068941
G Hsd17b7 hydroxysteroid 17-beta dehydrogenase 7 JBrowse link NW_004955462 13,555,488 13,574,506 RGD:9068941
G Insig1 insulin induced gene 1 JBrowse link NW_004955491 8,333,624 8,344,658 RGD:9068941
G Insig2 insulin induced gene 2 JBrowse link NW_004955459 11,571,582 11,596,069 RGD:9068941
G Lbr lamin B receptor JBrowse link NW_004955520 401,733 418,279 RGD:9068941
G LOC102012303 NADH-cytochrome b5 reductase 3 JBrowse link NW_004955413 27,971,140 27,979,905 RGD:9068941
G LOC102027002 lanosterol 14-alpha demethylase JBrowse link NW_004955432 9,092,923 9,112,615 RGD:9068941
G Lss lanosterol synthase JBrowse link NW_004955407 42,633,658 42,653,399 RGD:9068941
G Msmo1 methylsterol monooxygenase 1 JBrowse link NW_004955403 39,991,528 40,009,047 RGD:9068941
G Mvd mevalonate diphosphate decarboxylase JBrowse link NW_004955541 2,578,584 2,581,823 RGD:9068941
G Mvk mevalonate kinase JBrowse link NW_004955455 8,933,250 8,953,883 RGD:9068941
G Npc1l1 NPC1 like intracellular cholesterol transporter 1 JBrowse link NW_004955456 7,528,452 7,547,714 RGD:9068941
G Nsdhl NAD(P) dependent steroid dehydrogenase-like JBrowse link NW_004955498 8,135,897 8,161,775 RGD:9068941
G Plpp6 phospholipid phosphatase 6 JBrowse link NW_004955434 8,953,069 8,955,866 RGD:9068941
G Pmvk phosphomevalonate kinase JBrowse link NW_004955545 1,421,562 1,440,038 RGD:9068941
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link NW_004955426 25,079,718 25,102,090 RGD:9068941
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link NW_004955464 2,996,608 3,062,197 RGD:9068941
G Sqle squalene epoxidase JBrowse link NW_004955461 121,886 143,389 RGD:9068941
G Tm7sf2 transmembrane 7 superfamily member 2 JBrowse link NW_004955422 20,086,994 20,091,707 RGD:9068941
cholesterol biosynthetic process via 24,25-dihydrolanosterol term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC102027002 lanosterol 14-alpha demethylase JBrowse link NW_004955432 9,092,923 9,112,615 RGD:9068941
cholesterol biosynthetic process via desmosterol term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhcr24 24-dehydrocholesterol reductase JBrowse link NW_004955464 4,533,928 4,557,893 RGD:9068941
G Dhcr7 7-dehydrocholesterol reductase JBrowse link NW_004955422 15,119,155 15,136,771 RGD:9068941
G Ebp EBP cholestenol delta-isomerase JBrowse link NW_004955543 92,553 98,370 RGD:9068941
G Sc5d sterol-C5-desaturase JBrowse link NW_004955412 22,274,131 22,288,870 RGD:9068941
cholesterol biosynthetic process via lathosterol term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhcr24 24-dehydrocholesterol reductase JBrowse link NW_004955464 4,533,928 4,557,893 RGD:9068941
G Dhcr7 7-dehydrocholesterol reductase JBrowse link NW_004955422 15,119,155 15,136,771 RGD:9068941
G Ebp EBP cholestenol delta-isomerase JBrowse link NW_004955543 92,553 98,370 RGD:9068941
G Sc5d sterol-C5-desaturase JBrowse link NW_004955412 22,274,131 22,288,870 RGD:9068941
cortisol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cacna1h calcium voltage-gated channel subunit alpha1 H JBrowse link NW_004955442 16,047,965 16,108,862 RGD:9068941
dolichol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nus1 NUS1 dehydrodolichyl diphosphate synthase subunit JBrowse link NW_004955436 825,387 850,558 RGD:9068941
G Srd5a3 steroid 5 alpha-reductase 3 JBrowse link NW_004955447 15,578,661 15,588,218 RGD:9068941
ergosterol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC102023166 cytochrome P450 26B1 JBrowse link NW_004955424 13,336,189 13,355,368 RGD:9068941
glycerol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Got1 glutamic-oxaloacetic transaminase 1 JBrowse link NW_004955507 5,346,937 5,370,072 RGD:9068941
G Lep leptin JBrowse link NW_004955479 9,266,604 9,276,568 RGD:9068941
G Pgp phosphoglycolate phosphatase JBrowse link NW_004955442 15,051,149 15,053,123 RGD:9068941
glycerol biosynthetic process from pyruvate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pck1 phosphoenolpyruvate carboxykinase 1 JBrowse link NW_004955445 1,909,012 1,914,032 RGD:9068941
G Pck2 phosphoenolpyruvate carboxykinase 2, mitochondrial JBrowse link NW_004955409 36,288,402 36,296,761 RGD:9068941
glycolate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Park7 Parkinsonism associated deglycase JBrowse link NW_004955486 4,974,130 4,985,927 RGD:9068941
inositol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Impa1 inositol monophosphatase 1 JBrowse link NW_004955417 14,114 40,128 RGD:9068941
G Impa2 inositol monophosphatase 2 JBrowse link NW_004955402 1,119,376 1,143,589 RGD:9068941
G Isyna1 inositol-3-phosphate synthase 1 JBrowse link NW_004955524 3,099,017 3,100,454 RGD:9068941
inositol phosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fgf2 fibroblast growth factor 2 JBrowse link NW_004955428 17,840,554 17,894,779 RGD:9068941
G Ip6k1 inositol hexakisphosphate kinase 1 JBrowse link NW_004955532 1,625,298 1,644,973 RGD:9068941
G Ip6k2 inositol hexakisphosphate kinase 2 JBrowse link NW_004955532 766,577 794,461 RGD:9068941
G Ip6k3 inositol hexakisphosphate kinase 3 JBrowse link NW_004955437 2,128,337 2,150,714 RGD:9068941
G Ipmk inositol polyphosphate multikinase JBrowse link NW_004955425 11,949,849 12,000,610 RGD:9068941
G Ippk inositol-pentakisphosphate 2-kinase JBrowse link NW_004955515 5,170,164 5,219,130 RGD:9068941
G Itpka inositol-trisphosphate 3-kinase A JBrowse link NW_004955416 8,300,059 8,310,225 RGD:9068941
G Itpkb inositol-trisphosphate 3-kinase B JBrowse link NW_004955489 726,641 814,180 RGD:9068941
G Itpkc inositol-trisphosphate 3-kinase C JBrowse link NW_004955578 597,105 614,081 RGD:9068941
G Ppip5k1 diphosphoinositol pentakisphosphate kinase 1 JBrowse link NW_004955416 10,074,239 10,113,268 RGD:9068941
G Ppip5k2 diphosphoinositol pentakisphosphate kinase 2 JBrowse link NW_004955418 10,822,220 10,898,070 RGD:9068941
inositol trisphosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Plcb1 phospholipase C beta 1 JBrowse link NW_004955415 18,210,608 18,915,099 RGD:9068941
G Plcb2 phospholipase C beta 2 JBrowse link NW_004955416 7,221,326 7,240,743 RGD:9068941
G Plcb3 phospholipase C beta 3 JBrowse link NW_004955422 20,810,871 20,827,267 RGD:9068941
G Plcb4 phospholipase C beta 4 JBrowse link NW_004955415 19,108,120 19,462,084 RGD:9068941
G Plcd1 phospholipase C delta 1 JBrowse link NW_004955421 4,856,366 4,880,309 RGD:9068941
G Plcd3 phospholipase C delta 3 JBrowse link NW_004955451 17,822,345 17,827,848 RGD:9068941
G Plcd4 phospholipase C delta 4 JBrowse link NW_004955453 14,775,119 14,812,872 RGD:9068941
G Plce1 phospholipase C epsilon 1 JBrowse link NW_004955507 555,570 825,568 RGD:9068941
G Plcg1 phospholipase C gamma 1 JBrowse link NW_004955445 15,787,496 15,823,859 RGD:9068941
G Plcg2 phospholipase C gamma 2 JBrowse link NW_004955522 4,352,890 4,480,735 RGD:9068941
G Plch1 phospholipase C eta 1 JBrowse link NW_004955448 6,588,885 6,815,087 RGD:9068941
G Plch2 phospholipase C eta 2 JBrowse link NW_004955486 8,717,799 8,785,144 RGD:9068941
G Plcl1 phospholipase C like 1 (inactive) JBrowse link NW_004955403 2,643,092 2,904,651 RGD:9068941
G Plcl2 phospholipase C like 2 JBrowse link NW_004955430 9,157,074 9,347,366 RGD:9068941
G Plcz1 phospholipase C zeta 1 JBrowse link NW_004955413 14,791,750 14,846,327 RGD:9068941
G Ptafr platelet activating factor receptor JBrowse link NW_004955452 7,309,854 7,345,579 RGD:9068941
G Scp2 sterol carrier protein 2 JBrowse link NW_004955464 6,097,241 6,224,287 RGD:9068941
negative regulation of aldosterone biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp2 bone morphogenetic protein 2 JBrowse link NW_004955415 17,048,374 17,058,172 RGD:9068941
G Bmp5 bone morphogenetic protein 5 JBrowse link NW_004955411 450,674 557,213 RGD:9068941
G Dkk3 dickkopf WNT signaling pathway inhibitor 3 JBrowse link NW_004955414 27,466,636 27,507,186 RGD:9068941
negative regulation of calcidiol 1-monooxygenase activity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gfi1 growth factor independent 1 transcriptional repressor JBrowse link NW_004955423 2,024,084 2,032,530 RGD:9068941
G LOC102011841 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial JBrowse link NW_004955458 5,472,404 5,477,001 RGD:9068941
G Nfkb1 nuclear factor kappa B subunit 1 JBrowse link NW_004955496 5,842,734 5,950,995 RGD:9068941
negative regulation of cholesterol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apoe apolipoprotein E JBrowse link NW_004955555 1,998,170 2,002,003 RGD:9068941
G Erlin1 ER lipid raft associated 1 JBrowse link NW_004955507 6,029,247 6,062,946 RGD:9068941
G Erlin2 ER lipid raft associated 2 JBrowse link NW_004955463 13,445,468 13,460,370 RGD:9068941
G Scap SREBF chaperone JBrowse link NW_004955420 24,813,683 24,869,602 RGD:9068941
G Sod1 superoxide dismutase 1 JBrowse link NW_004955407 31,261,451 31,267,657 RGD:9068941
negative regulation of cortisol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp2 bone morphogenetic protein 2 JBrowse link NW_004955415 17,048,374 17,058,172 RGD:9068941
G Bmp5 bone morphogenetic protein 5 JBrowse link NW_004955411 450,674 557,213 RGD:9068941
G Dkk3 dickkopf WNT signaling pathway inhibitor 3 JBrowse link NW_004955414 27,466,636 27,507,186 RGD:9068941
negative regulation of inositol phosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Plek pleckstrin JBrowse link NW_004955424 16,494,052 16,524,790 RGD:9068941
octopamine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dbh dopamine beta-hydroxylase JBrowse link NW_004955513 2,918,085 2,932,481 RGD:9068941
G Moxd1 monooxygenase DBH like 1 JBrowse link NW_004955436 12,818,375 12,872,229 RGD:9068941
phytosphingosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acer3 alkaline ceramidase 3 JBrowse link NW_004955414 14,741,027 14,846,931 RGD:9068941
polyprenol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhdds dehydrodolichyl diphosphate synthase subunit JBrowse link NW_004955452 5,811,053 5,844,992 RGD:9068941
positive regulation of aldosterone biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp6 bone morphogenetic protein 6 JBrowse link NW_004955465 6,053,600 6,201,254 RGD:9068941
G Wnt4 Wnt family member 4 JBrowse link NW_004955452 2,319,446 2,344,740 RGD:9068941
positive regulation of calcidiol 1-monooxygenase activity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ifng interferon gamma JBrowse link NW_004955458 14,643,333 14,648,020 RGD:9068941
G Il1b interleukin 1 beta JBrowse link NW_004955470 1,486,936 1,491,888 RGD:9068941
G Tnf tumor necrosis factor JBrowse link NW_004955437 117,267 119,899 RGD:9068941
positive regulation of cholesterol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcg1 ATP binding cassette subfamily G member 1 JBrowse link NW_004955407 39,410,262 39,459,383 RGD:9068941
G Fgf1 fibroblast growth factor 1 JBrowse link NW_004955415 11,151,330 11,245,554 RGD:9068941
G LOC102008593 cholesterol 7-alpha-monooxygenase JBrowse link NW_004955454 17,035,105 17,078,854 RGD:9068941
G Por P450 (cytochrome) oxidoreductase JBrowse link NW_004955456 14,698,589 14,748,520 RGD:9068941
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link NW_004955426 25,079,718 25,102,090 RGD:9068941
G Srebf1 sterol regulatory element binding transcription factor 1 JBrowse link NW_004955577 171,425 183,669 RGD:9068941
positive regulation of cortisol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wnt4 Wnt family member 4 JBrowse link NW_004955452 2,319,446 2,344,740 RGD:9068941
positive regulation of inositol phosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adcyap1r1 ADCYAP receptor type I JBrowse link NW_004955410 32,176,683 32,229,187 RGD:9068941
G Avpr1b arginine vasopressin receptor 1B JBrowse link NW_004955406 41,706,088 41,716,173 RGD:9068941
G Cd244 CD244 molecule JBrowse link NW_004955468 12,532,937 12,559,859 RGD:9068941
G Ntsr1 neurotensin receptor 1 JBrowse link NW_004955528 1,348,616 1,394,798 RGD:9068941
G Ptafr platelet activating factor receptor JBrowse link NW_004955452 7,309,854 7,345,579 RGD:9068941
G Pth parathyroid hormone JBrowse link NW_004955414 28,828,389 28,831,417 RGD:9068941
G Pth1r parathyroid hormone 1 receptor JBrowse link NW_004955420 25,274,269 25,291,984 RGD:9068941
G Snca synuclein alpha JBrowse link NW_004955405 854,011 962,741 RGD:9068941
positive regulation of inositol trisphosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gper1 G protein-coupled estrogen receptor 1 JBrowse link NW_004955460 8,790,798 8,794,902 RGD:9068941
G Hrh1 histamine receptor H1 JBrowse link NW_004955429 14,022,332 14,069,931 RGD:9068941
G Lhcgr luteinizing hormone/choriogonadotropin receptor JBrowse link NW_004955441 15,205,883 15,263,617 RGD:9068941
G P2ry1 purinergic receptor P2Y1 JBrowse link NW_004955448 4,366,706 4,372,626 RGD:9068941
G P2ry6 pyrimidinergic receptor P2Y6 JBrowse link NW_004955414 18,177,406 18,215,428 RGD:9068941
G Pou1f1 POU class 1 homeobox 1 JBrowse link NW_004955407 5,996,016 6,011,483 RGD:9068941
protein deglycation, glyoxal removal term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Park7 Parkinsonism associated deglycase JBrowse link NW_004955486 4,974,130 4,985,927 RGD:9068941
regulation of aldosterone biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clcn2 chloride voltage-gated channel 2 JBrowse link NW_004955420 23,138,558 23,152,462 RGD:9068941
regulation of calcidiol 1-monooxygenase activity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Vdr vitamin D receptor JBrowse link NW_004955500 6,745,725 6,798,052 RGD:9068941
regulation of cholesterol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abca2 ATP binding cassette subfamily A member 2 JBrowse link NW_004955513 5,035,879 5,051,140 RGD:9068941
G Acaca acetyl-CoA carboxylase alpha JBrowse link NW_004955451 679,033 909,892 RGD:9068941
G Acacb acetyl-CoA carboxylase beta JBrowse link NW_004955455 10,282,308 10,427,439 RGD:9068941
G Apob apolipoprotein B JBrowse link NW_004955469 3,437,422 3,478,408 RGD:9068941
G Dhcr7 7-dehydrocholesterol reductase JBrowse link NW_004955422 15,119,155 15,136,771 RGD:9068941
G Elovl6 ELOVL fatty acid elongase 6 JBrowse link NW_004955496 179,634 301,908 RGD:9068941
G Fasn fatty acid synthase JBrowse link NW_004955506 1,063,002 1,079,939 RGD:9068941
G Fdft1 farnesyl-diphosphate farnesyltransferase 1 JBrowse link NW_004955403 53,068,011 53,081,499 RGD:9068941
G Fdps farnesyl diphosphate synthase JBrowse link NW_004955545 1,757,090 1,765,028 RGD:9068941
G Ggps1 geranylgeranyl diphosphate synthase 1 JBrowse link NW_004955492 4,582,998 4,593,194 RGD:9068941
G Gpam glycerol-3-phosphate acyltransferase, mitochondrial JBrowse link NW_004955431 17,291,890 17,363,611 RGD:9068941
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase JBrowse link NW_004955425 25,362,165 25,380,611 RGD:9068941
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 JBrowse link NW_004955446 18,978,261 18,996,794 RGD:9068941
G Kpnb1 karyopherin subunit beta 1 JBrowse link NW_004955451 13,365,881 13,398,491 RGD:9068941
G LOC102027002 lanosterol 14-alpha demethylase JBrowse link NW_004955432 9,092,923 9,112,615 RGD:9068941
G Lss lanosterol synthase JBrowse link NW_004955407 42,633,658 42,653,399 RGD:9068941
G Mbtps1 membrane bound transcription factor peptidase, site 1 JBrowse link NW_004955564 176,230 226,555 RGD:9068941
G Mbtps2 membrane bound transcription factor peptidase, site 2 JBrowse link NW_004955509 2,185,054 2,222,497 RGD:9068941
G Mvd mevalonate diphosphate decarboxylase JBrowse link NW_004955541 2,578,584 2,581,823 RGD:9068941
G Mvk mevalonate kinase JBrowse link NW_004955455 8,933,250 8,953,883 RGD:9068941
G Nfya nuclear transcription factor Y subunit alpha JBrowse link NW_004955437 7,745,182 7,770,348 RGD:9068941
G Nfyb nuclear transcription factor Y subunit beta JBrowse link NW_004955405 38,773,690 38,789,534 RGD:9068941
G Nfyc nuclear transcription factor Y subunit gamma JBrowse link NW_004955537 544,534 611,459 RGD:9068941
G Pmvk phosphomevalonate kinase JBrowse link NW_004955545 1,421,562 1,440,038 RGD:9068941
G Ran RAN, member RAS oncogene family JBrowse link NW_004955482 1,222,944 1,223,891 RGD:9068941
G Sc5d sterol-C5-desaturase JBrowse link NW_004955412 22,274,131 22,288,870 RGD:9068941
G Sec14l2 SEC14 like lipid binding 2 JBrowse link NW_004955455 4,637,062 4,660,064 RGD:9068941
G Sp1 Sp1 transcription factor JBrowse link NW_004955458 644,435 677,360 RGD:9068941
G Sqle squalene epoxidase JBrowse link NW_004955461 121,886 143,389 RGD:9068941
G Srebf1 sterol regulatory element binding transcription factor 1 JBrowse link NW_004955577 171,425 183,669 RGD:9068941
G Srebf2 sterol regulatory element binding transcription factor 2 JBrowse link NW_004955413 27,271,717 27,326,655 RGD:9068941
G Tm7sf2 transmembrane 7 superfamily member 2 JBrowse link NW_004955422 20,086,994 20,091,707 RGD:9068941
regulation of cortisol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dgkq diacylglycerol kinase theta JBrowse link NW_004955514 452,548 475,240 RGD:9068941
G H6pd hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase JBrowse link NW_004955486 4,088,354 4,115,077 RGD:9068941
regulation of inositol trisphosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ptk2b protein tyrosine kinase 2 beta JBrowse link NW_004955403 49,856,056 49,970,800 RGD:9068941
sphinganine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sptlc1 serine palmitoyltransferase long chain base subunit 1 JBrowse link NW_004955515 57,711 161,012 RGD:9068941
G Sptlc2 serine palmitoyltransferase long chain base subunit 2 JBrowse link NW_004955438 1,385,431 1,491,534 RGD:9068941
sphingosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abca2 ATP binding cassette subfamily A member 2 JBrowse link NW_004955513 5,035,879 5,051,140 RGD:9068941
G Acer1 alkaline ceramidase 1 JBrowse link NW_004955495 3,247,170 3,271,417 RGD:9068941
G Acer2 alkaline ceramidase 2 JBrowse link NW_004955434 21,786,857 21,810,648 RGD:9068941
G Acer3 alkaline ceramidase 3 JBrowse link NW_004955414 14,741,027 14,846,931 RGD:9068941
G Asah1 N-acylsphingosine amidohydrolase 1 JBrowse link NW_004955552 1,623,263 1,660,285 RGD:9068941
G Asah2 N-acylsphingosine amidohydrolase 2 JBrowse link NW_004955425 5,840,355 5,931,891 RGD:9068941
G Gba glucosylceramidase beta JBrowse link NW_004955545 1,682,097 1,689,373 RGD:9068941
G Sphk1 sphingosine kinase 1 JBrowse link NW_004955506 5,902,079 5,906,639 RGD:9068941
G Sphk2 sphingosine kinase 2 JBrowse link NW_004955559 1,921,479 1,929,450 RGD:9068941
G Sptlc1 serine palmitoyltransferase long chain base subunit 1 JBrowse link NW_004955515 57,711 161,012 RGD:9068941
G Sptlc2 serine palmitoyltransferase long chain base subunit 2 JBrowse link NW_004955438 1,385,431 1,491,534 RGD:9068941
tetrahydrobiopterin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhfr dihydrofolate reductase JBrowse link NW_004955418 29,274,170 29,283,028 RGD:9068941
G Gch1 GTP cyclohydrolase 1 JBrowse link NW_004955409 8,624,225 8,670,436 RGD:9068941
G Pcbd1 pterin-4 alpha-carbinolamine dehydratase 1 JBrowse link NW_004955437 20,482,589 20,487,337 RGD:9068941
G Pcbd2 pterin-4 alpha-carbinolamine dehydratase 2 JBrowse link NW_004955408 30,090,808 30,137,894 RGD:9068941
G Pts 6-pyruvoyltetrahydropterin synthase JBrowse link NW_004955412 13,880,937 13,888,562 RGD:9068941
G Qdpr quinoid dihydropteridine reductase JBrowse link NW_004955480 6,646,088 6,666,866 RGD:9068941
G Spr sepiapterin reductase JBrowse link NW_004955424 12,711,064 12,716,000 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14568
    metabolic process 9957
      small molecule metabolic process 1795
        alcohol metabolic process 331
          alcohol biosynthetic process 158
            amino acid catabolic process to alcohol via Ehrlich pathway + 0
            cellular alcohol biosynthetic process + 4
            cyclopentanol biosynthetic process 0
            fatty alcohol biosynthetic process + 0
            fonsecin biosynthetic process 0
            monensin A biosynthetic process 0
            negative regulation of alcohol biosynthetic process + 12
            octopamine biosynthetic process 2
            polyol biosynthetic process + 72
            polyprenol biosynthetic process + 3
            positive regulation of alcohol biosynthetic process + 25
            prenol biosynthetic process 0
            primary alcohol biosynthetic process + 10
            regulation of alcohol biosynthetic process + 73
            secondary alcohol biosynthetic process + 66
            tertiary alcohol biosynthetic process + 7
Path 2
Term Annotations click to browse term
  biological_process 14568
    metabolic process 9957
      organic substance metabolic process 9462
        organic substance biosynthetic process 5391
          organic hydroxy compound biosynthetic process 247
            alcohol biosynthetic process 158
              amino acid catabolic process to alcohol via Ehrlich pathway + 0
              cellular alcohol biosynthetic process + 4
              cyclopentanol biosynthetic process 0
              fatty alcohol biosynthetic process + 0
              fonsecin biosynthetic process 0
              monensin A biosynthetic process 0
              negative regulation of alcohol biosynthetic process + 12
              octopamine biosynthetic process 2
              polyol biosynthetic process + 72
              polyprenol biosynthetic process + 3
              positive regulation of alcohol biosynthetic process + 25
              prenol biosynthetic process 0
              primary alcohol biosynthetic process + 10
              regulation of alcohol biosynthetic process + 73
              secondary alcohol biosynthetic process + 66
              tertiary alcohol biosynthetic process + 7
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.