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ONTOLOGY REPORT - ANNOTATIONS


Term:alcohol biosynthetic process
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Accession:GO:0046165 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom.
Synonyms:exact_synonym: alcohol anabolism;   alcohol biosynthesis;   alcohol formation;   alcohol synthesis


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aldosterone biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CACNA1H calcium voltage-gated channel subunit alpha1 H JBrowse link 6 39,510,129 39,533,129 RGD:13508589
G CYP11B2 cytochrome P450, family 11, subfamily B, polypeptide 2 JBrowse link 13 36,866,476 36,880,625 RGD:13508589
calcitriol biosynthetic process from calciol term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CYP27A1 cytochrome P450 family 27 subfamily A member 1 JBrowse link 37 25,366,475 25,401,978 RGD:13508589
G CYP27B1 cytochrome P450 family 27 subfamily B member 1 JBrowse link 10 1,825,224 1,830,845 RGD:13508589
G CYP2R1 cytochrome P450 family 2 subfamily R member 1 JBrowse link 21 37,553,883 37,579,744 RGD:13508589
cholesterol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G APOA1 apolipoprotein A1 JBrowse link 5 16,740,071 16,742,081 RGD:13508589
G APOA4 apolipoprotein A4 JBrowse link 5 16,751,588 16,754,215 RGD:13508589
G APOA5 apolipoprotein A5 JBrowse link 5 16,774,117 16,777,535 RGD:13508589
G CFTR CF transmembrane conductance regulator JBrowse link 14 56,290,417 56,452,919 RGD:13508589
G CYB5R3 cytochrome b5 reductase 3 JBrowse link 10 22,829,898 22,848,284 RGD:13508589
G DHCR24 24-dehydrocholesterol reductase JBrowse link 5 54,294,055 54,324,389 RGD:13508589
G DHCR7 7-dehydrocholesterol reductase JBrowse link 18 47,257,750 47,277,436 RGD:13508589
G FDFT1 farnesyl-diphosphate farnesyltransferase 1 JBrowse link 25 26,060,031 26,093,515 RGD:13508589
G G6PD glucose-6-phosphate dehydrogenase JBrowse link X 122,217,317 122,231,862 RGD:13508589
G HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase JBrowse link 3 30,970,037 30,988,987 RGD:13508589
G HSD17B7 hydroxysteroid 17-beta dehydrogenase 7 JBrowse link 38 19,975,935 19,999,077 RGD:13508589
G INSIG1 insulin induced gene 1 JBrowse link 16 18,260,456 18,271,855 RGD:13508589
G LBR lamin B receptor JBrowse link 7 39,289,517 39,309,026 RGD:13508589
G LSS lanosterol synthase JBrowse link 31 39,479,255 39,502,439 RGD:13508589
G MVD mevalonate diphosphate decarboxylase JBrowse link 5 64,683,146 64,691,576 RGD:13508589
G MVK mevalonate kinase JBrowse link 26 17,497,516 17,519,015 RGD:13508589
G PMVK phosphomevalonate kinase JBrowse link 7 42,532,968 42,563,618 RGD:13508589
G TM7SF2 transmembrane 7 superfamily member 2 JBrowse link 18 52,079,367 52,083,762 RGD:13508589
cholesterol biosynthetic process via 24,25-dihydrolanosterol term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CYP51A1 cytochrome P450 family 51 subfamily A member 1 JBrowse link 14 17,746,654 17,767,019 RGD:13508589
cholesterol biosynthetic process via lathosterol term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SC5D sterol-C5-desaturase JBrowse link 5 12,760,591 12,774,484 RGD:13508589
cortisol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CACNA1H calcium voltage-gated channel subunit alpha1 H JBrowse link 6 39,510,129 39,533,129 RGD:13508589
dolichol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NUS1 NUS1 dehydrodolichyl diphosphate synthase subunit JBrowse link 1 57,866,760 57,895,505 RGD:13508589
G SRD5A3 steroid 5 alpha-reductase 3 JBrowse link 13 47,627,854 47,643,116 RGD:13508589
ergosterol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 JBrowse link 28 7,423,955 7,432,359 RGD:13508589
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 JBrowse link 17 50,633,397 50,653,882 RGD:13508589
glycerol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GOT1 glutamic-oxaloacetic transaminase 1 JBrowse link 28 12,352,658 12,377,960 RGD:13508589
glycerol biosynthetic process from pyruvate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PCK1 phosphoenolpyruvate carboxykinase 1 JBrowse link 24 42,538,858 42,544,200 RGD:13508589
G PCK2 phosphoenolpyruvate carboxykinase 2, mitochondrial JBrowse link 8 4,099,016 4,107,870 RGD:13508589
inositol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ELL elongation factor for RNA polymerase II JBrowse link 20 44,512,665 44,592,156 RGD:13508589
G FKBP8 FKBP prolyl isomerase 8 JBrowse link 20 44,494,856 44,504,084 RGD:13508589
G IMPA1 inositol monophosphatase 1 JBrowse link 29 28,772,044 28,799,170 RGD:13508589
G IMPA2 inositol monophosphatase 2 JBrowse link 7 77,604,620 77,648,416 RGD:13508589
G ISYNA1 inositol-3-phosphate synthase 1 JBrowse link 20 44,594,816 44,598,495 RGD:13508589
inositol phosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IP6K1 inositol hexakisphosphate kinase 1 JBrowse link 20 39,484,487 39,550,199 RGD:13508589
G IP6K2 inositol hexakisphosphate kinase 2 JBrowse link 20 40,403,260 40,437,863 RGD:13508589
G IP6K3 inositol hexakisphosphate kinase 3 JBrowse link 12 3,072,052 3,095,659 RGD:13508589
G IPPK inositol-pentakisphosphate 2-kinase JBrowse link 1 98,760,104 98,800,891 RGD:13508589
G ITPKA inositol-trisphosphate 3-kinase A JBrowse link 30 8,532,191 8,541,273 RGD:13508589
G ITPKB inositol-trisphosphate 3-kinase B JBrowse link 7 38,253,257 38,346,400 RGD:13508589
G ITPKC inositol-trisphosphate 3-kinase C JBrowse link 1 113,037,833 113,053,877 RGD:13508589
G PPIP5K1 diphosphoinositol pentakisphosphate kinase 1 JBrowse link 30 10,383,733 10,436,423 RGD:13508589
G PPIP5K2 diphosphoinositol pentakisphosphate kinase 2 JBrowse link 3 8,013,879 8,083,177 RGD:13508589
inositol trisphosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PLCB1 phospholipase C beta 1 JBrowse link 24 13,337,285 13,996,218 RGD:13508589
G PLCB2 phospholipase C beta 2 JBrowse link 30 7,472,208 7,493,106 RGD:13508589
G PLCB3 phospholipase C beta 3 JBrowse link 18 52,793,848 52,809,065 RGD:13508589
G PLCB4 phospholipase C beta 4 JBrowse link 24 12,750,631 13,169,697 RGD:13508589
G PLCD1 phospholipase C delta 1 JBrowse link 23 7,782,495 7,804,969 RGD:13508589
G PLCD3 phospholipase C delta 3 JBrowse link 9 18,399,946 18,419,630 RGD:13508589
G PLCD4 phospholipase C delta 4 JBrowse link 37 25,221,329 25,244,492 RGD:13508589
G PLCE1 phospholipase C epsilon 1 JBrowse link 28 8,209,707 8,484,427 RGD:13508589
G PLCG1 phospholipase C gamma 1 JBrowse link 24 29,198,536 29,213,899 RGD:13508589
G PLCG2 phospholipase C gamma 2 JBrowse link 5 70,054,683 70,233,459 RGD:13508589
G PLCH1 phospholipase C eta 1 JBrowse link 23 49,280,314 49,483,210 RGD:13508589
G PLCH2 phospholipase C eta 2 JBrowse link 5 57,303,160 57,368,568 RGD:13508589
G PLCL1 phospholipase C like 1 (inactive) JBrowse link 37 7,235,403 7,575,429 RGD:13508589
G PLCL2 phospholipase C like 2 JBrowse link 23 25,814,392 25,999,666 RGD:13508589
G PLCZ1 phospholipase C zeta 1 JBrowse link 27 28,363,207 28,446,377 RGD:13508589
G PTAFR platelet activating factor receptor JBrowse link 2 72,225,386 72,256,353 RGD:13508589
negative regulation of aldosterone biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP5 bone morphogenetic protein 5 JBrowse link 12 23,089,429 23,202,176 RGD:13508589
G REST RE1 silencing transcription factor JBrowse link 13 49,041,082 49,062,596 RGD:13508589
negative regulation of calcidiol 1-monooxygenase activity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CYP27B1 cytochrome P450 family 27 subfamily B member 1 JBrowse link 10 1,825,224 1,830,845 RGD:13508589
G GFI1 growth factor independent 1 transcriptional repressor JBrowse link 6 56,473,032 56,484,422 RGD:13508589
negative regulation of cholesterol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ERLIN1 ER lipid raft associated 1 JBrowse link 28 12,924,942 12,962,016 RGD:13508589
G ERLIN2 ER lipid raft associated 2 JBrowse link 16 27,622,549 27,639,807 RGD:13508589
G SOD1 superoxide dismutase 1 JBrowse link 31 26,540,291 26,544,212 RGD:13508589
negative regulation of cortisol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP5 bone morphogenetic protein 5 JBrowse link 12 23,089,429 23,202,176 RGD:13508589
G REST RE1 silencing transcription factor JBrowse link 13 49,041,082 49,062,596 RGD:13508589
octopamine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DBH dopamine beta-hydroxylase JBrowse link 9 50,004,806 50,024,130 RGD:13508589
G LOC482755 putative DBH-like monooxygenase protein 2 JBrowse link 16 7,019,646 7,042,005 RGD:13508589
G MOXD1 monooxygenase DBH like 1 JBrowse link 1 25,018,452 25,114,028 RGD:13508589
phytosphingosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACER3 alkaline ceramidase 3 JBrowse link 21 21,711,315 21,863,409 RGD:13508589
polyprenol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DHDDS dehydrodolichyl diphosphate synthase subunit JBrowse link 2 73,583,927 73,611,321 RGD:13508589
positive regulation of aldosterone biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP6 bone morphogenetic protein 6 JBrowse link 35 7,780,763 7,833,095 RGD:13508589
G WNT4 Wnt family member 4 JBrowse link 2 77,112,045 77,129,702 RGD:13508589
positive regulation of calcidiol 1-monooxygenase activity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IFNG interferon gamma JBrowse link 10 10,406,866 10,411,698 RGD:13508589
G TNF tumor necrosis factor JBrowse link 12 1,074,561 1,076,425 RGD:13508589
positive regulation of cholesterol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABCG1 ATP binding cassette subfamily G member 1 JBrowse link 31 36,574,406 36,627,598 RGD:13508589
G FGF1 fibroblast growth factor 1 JBrowse link 2 37,467,431 37,554,770 RGD:13508589
G SREBF1 sterol regulatory element binding transcription factor 1 JBrowse link 5 41,663,809 41,686,764 RGD:13508589
positive regulation of cortisol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G WNT4 Wnt family member 4 JBrowse link 2 77,112,045 77,129,702 RGD:13508589
positive regulation of inositol phosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AVPR1B arginine vasopressin receptor 1B JBrowse link 38 2,440,574 2,446,037 RGD:13508589
G PTH parathyroid hormone JBrowse link 21 36,417,062 36,419,967 RGD:13508589
positive regulation of inositol trisphosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GPER1 G protein-coupled estrogen receptor 1 JBrowse link 6 15,792,072 15,796,922 RGD:13508589
G LHCGR luteinizing hormone/choriogonadotropin receptor JBrowse link 10 50,540,706 50,594,336 RGD:13508589
G P2RY6 pyrimidinergic receptor P2Y6 JBrowse link 21 24,929,502 24,966,857 RGD:13508589
G POU1F1 POU class 1 homeobox 1 JBrowse link 31 769,454 788,761 RGD:13508589
protein deglycation, glyoxal removal term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PARK7 Parkinsonism associated deglycase JBrowse link 5 61,576,219 61,592,325 RGD:13508589
regulation of aldosterone biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLCN2 chloride voltage-gated channel 2 JBrowse link 34 17,224,136 17,238,755 RGD:13508589
regulation of calcidiol 1-monooxygenase activity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G VDR vitamin D receptor JBrowse link 27 6,852,915 6,909,466 RGD:13508589
regulation of cholesterol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G APOB apolipoprotein B JBrowse link 17 15,877,937 15,916,032 RGD:13508589
G SCAP SREBF chaperone JBrowse link 20 41,418,507 41,485,681 RGD:13508589
regulation of inositol trisphosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PTK2B protein tyrosine kinase 2 beta JBrowse link 25 30,137,546 30,264,221 RGD:13508589
sphinganine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SPTLC1 serine palmitoyltransferase long chain base subunit 1 JBrowse link 1 94,997,240 95,062,424 RGD:13508589
G SPTLC2 serine palmitoyltransferase long chain base subunit 2 JBrowse link 8 50,291,797 50,401,202 RGD:13508589
sphingosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACER1 alkaline ceramidase 1 JBrowse link 20 53,819,224 53,838,183 RGD:13508589
G ACER2 alkaline ceramidase 2 JBrowse link 11 39,190,873 39,223,590 RGD:13508589
G ACER3 alkaline ceramidase 3 JBrowse link 21 21,711,315 21,863,409 RGD:13508589
G ASAH1 N-acylsphingosine amidohydrolase 1 JBrowse link 16 41,297,215 41,335,521 RGD:13508589
G ASAH2 N-acylsphingosine amidohydrolase 2 JBrowse link 26 37,136,601 37,228,215 RGD:13508589
G GBA glucosylceramidase beta JBrowse link 7 42,317,704 42,322,285 RGD:13508589
G SPHK1 sphingosine kinase 1 JBrowse link 9 4,311,698 4,314,773 RGD:13508589
G SPHK2 sphingosine kinase 2 JBrowse link 1 107,681,425 107,689,790 RGD:13508589
G SPTLC1 serine palmitoyltransferase long chain base subunit 1 JBrowse link 1 94,997,240 95,062,424 RGD:13508589
G SPTLC2 serine palmitoyltransferase long chain base subunit 2 JBrowse link 8 50,291,797 50,401,202 RGD:13508589
tetrahydrobiopterin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GCH1 GTP cyclohydrolase 1 JBrowse link 8 30,733,422 30,784,067 RGD:13508589
G PCBD1 pterin-4 alpha-carbinolamine dehydratase 1 JBrowse link 4 21,719,863 21,723,493 RGD:13508589
G PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 JBrowse link 11 22,998,005 23,015,572 RGD:13508589
G PTS 6-pyruvoyltetrahydropterin synthase JBrowse link 5 20,883,128 20,912,318 RGD:13508589
G QDPR quinoid dihydropteridine reductase JBrowse link 3 62,970,850 62,987,512 RGD:13508589
G SPR sepiapterin reductase JBrowse link 17 49,950,192 49,957,455 RGD:13508589

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14250
    metabolic process 8826
      small molecule metabolic process 1241
        alcohol metabolic process 214
          alcohol biosynthetic process 107
            amino acid catabolic process to alcohol via Ehrlich pathway + 0
            cellular alcohol biosynthetic process + 5
            cyclopentanol biosynthetic process 0
            fatty alcohol biosynthetic process + 0
            fonsecin biosynthetic process 0
            monensin A biosynthetic process 0
            negative regulation of alcohol biosynthetic process + 7
            octopamine biosynthetic process 3
            polyol biosynthetic process + 59
            polyprenol biosynthetic process + 3
            positive regulation of alcohol biosynthetic process + 13
            prenol biosynthetic process 0
            primary alcohol biosynthetic process + 8
            regulation of alcohol biosynthetic process + 25
            secondary alcohol biosynthetic process + 30
            tertiary alcohol biosynthetic process + 4
Path 2
Term Annotations click to browse term
  biological_process 14250
    metabolic process 8826
      organic substance metabolic process 8337
        organic substance biosynthetic process 4235
          organic hydroxy compound biosynthetic process 157
            alcohol biosynthetic process 107
              amino acid catabolic process to alcohol via Ehrlich pathway + 0
              cellular alcohol biosynthetic process + 5
              cyclopentanol biosynthetic process 0
              fatty alcohol biosynthetic process + 0
              fonsecin biosynthetic process 0
              monensin A biosynthetic process 0
              negative regulation of alcohol biosynthetic process + 7
              octopamine biosynthetic process 3
              polyol biosynthetic process + 59
              polyprenol biosynthetic process + 3
              positive regulation of alcohol biosynthetic process + 13
              prenol biosynthetic process 0
              primary alcohol biosynthetic process + 8
              regulation of alcohol biosynthetic process + 25
              secondary alcohol biosynthetic process + 30
              tertiary alcohol biosynthetic process + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.