ONTOLOGY REPORT - ANNOTATIONS


Term:phenol-containing compound biosynthetic process
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Accession:GO:0046189 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring.
Synonyms:exact_synonym: phenol-containing compound anabolism;   phenol-containing compound biosynthesis;   phenol-containing compound formation;   phenol-containing compound synthesis


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catecholamine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Crhr2 corticotropin releasing hormone receptor 2 JBrowse link 4 85,286,371 85,329,374 RGD:5131263
G Ddc dopa decarboxylase JBrowse link 14 91,905,919 91,996,816 RGD:727571
G Hdc histidine decarboxylase JBrowse link 3 119,057,524 119,075,599 RGD:1600115
G Th tyrosine hydroxylase JBrowse link 1 216,073,034 216,080,287 RGD:4139888
dopamine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agtr1a angiotensin II receptor, type 1a JBrowse link 17 35,907,102 35,958,136 RGD:6903884
G Agtr2 angiotensin II receptor, type 2 JBrowse link X 119,389,480 119,393,845 RGD:6903884
G Chrna7 cholinergic receptor nicotinic alpha 7 subunit JBrowse link 1 123,897,341 124,039,263 RGD:704388
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 JBrowse link 7 123,599,264 123,608,436 RGD:5143981
G Dao D-amino-acid oxidase JBrowse link 12 48,353,691 48,373,647 RGD:1600115
RGD:1624291
G Ddc dopa decarboxylase JBrowse link 14 91,905,919 91,996,816 RGD:4139893
RGD:1600115
G Gch1 GTP cyclohydrolase 1 JBrowse link 15 23,935,011 23,968,971 RGD:1624291
RGD:1600115
G Gpr37 G protein-coupled receptor 37 JBrowse link 4 51,822,163 51,844,228 RGD:1624291
RGD:1600115
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 JBrowse link 3 43,111,258 43,128,391 RGD:1600115
RGD:1624291
G Slc6a3 solute carrier family 6 member 3 JBrowse link 1 32,323,011 32,363,983 RGD:1624291
RGD:1600115
G Snca synuclein alpha JBrowse link 4 90,782,412 90,883,236 RGD:1624291
RGD:1600115
G Tgfb2 transforming growth factor, beta 2 JBrowse link 13 105,039,639 105,142,010 RGD:1624291
RGD:1600115
G Th tyrosine hydroxylase JBrowse link 1 216,073,034 216,080,287 RGD:1624291
dopamine biosynthetic process from tyrosine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Th tyrosine hydroxylase JBrowse link 1 216,073,034 216,080,287 RGD:1580046
RGD:13792537
RGD:1624291
RGD:5129111
RGD:5130972
epinephrine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pnmt phenylethanolamine-N-methyltransferase JBrowse link 10 86,340,893 86,342,501 RGD:628457
RGD:1600115
RGD:4139902
RGD:4139901
G Th tyrosine hydroxylase JBrowse link 1 216,073,034 216,080,287 RGD:1624291
RGD:1600115
melanin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asip agouti signaling protein JBrowse link 3 150,492,010 150,579,870 RGD:1624291
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 JBrowse link X 72,128,996 72,133,692 RGD:1624291
RGD:1600115
G Dct dopachrome tautomerase JBrowse link 15 103,208,174 103,245,033 RGD:1624291
G Ddt D-dopachrome tautomerase JBrowse link 20 13,827,153 13,829,624 RGD:1600115
G Mc1r melanocortin 1 receptor JBrowse link 19 56,215,420 56,219,987 RGD:1624291
G Myo5a myosin VA JBrowse link 8 82,038,966 82,156,507 RGD:1624291
RGD:1600115
G Oca2 OCA2 melanosomal transmembrane protein JBrowse link 1 114,661,970 114,987,433 RGD:1624291
RGD:1600115
G Pmel premelanosome protein JBrowse link 7 3,133,347 3,143,827 RGD:1624291
G Trpc1 transient receptor potential cation channel, subfamily C, member 1 JBrowse link 8 103,503,982 103,554,905 RGD:1624291
RGD:1600115
G Tyr tyrosinase JBrowse link 1 151,012,598 151,106,802 RGD:1624291
RGD:13792537
melanin biosynthetic process from tyrosine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dct dopachrome tautomerase JBrowse link 15 103,208,174 103,245,033 RGD:1624291
negative regulation of melanin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rapgef2 Rap guanine nucleotide exchange factor 2 JBrowse link 2 177,836,191 178,057,378 RGD:1624291
RGD:1600115
G Slc24a5 solute carrier family 24 member 5 JBrowse link 3 117,335,212 117,354,480 RGD:1624291
G Wnt5a Wnt family member 5A JBrowse link 16 4,469,451 4,490,271 RGD:1624291
RGD:1600115
norepinephrine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp7a ATPase copper transporting alpha JBrowse link X 77,076,085 77,193,644 RGD:1624291
G Dbh dopamine beta-hydroxylase JBrowse link 3 5,709,236 5,731,895 RGD:727567
RGD:13792537
RGD:1624291
RGD:1600115
RGD:1625403
G Epas1 endothelial PAS domain protein 1 JBrowse link 6 10,306,508 10,385,239 RGD:5128877
G Gata3 GATA binding protein 3 JBrowse link 17 72,419,752 72,452,043 RGD:1624291
RGD:1600115
G Insm1 INSM transcriptional repressor 1 JBrowse link 3 140,427,961 140,430,467 RGD:1624291
G Kl Klotho JBrowse link 12 942,974 987,206 RGD:10403068
G Moxd1 monooxygenase, DBH-like 1 JBrowse link 1 22,124,498 22,206,565 RGD:13792537
G Moxd2 monooxygenase, DBH-like 2 JBrowse link 4 69,117,477 69,125,972 RGD:13792537
G Th tyrosine hydroxylase JBrowse link 1 216,073,034 216,080,287 RGD:1624291
RGD:1600115
octopamine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dbh dopamine beta-hydroxylase JBrowse link 3 5,709,236 5,731,895 RGD:13792537
G Moxd1 monooxygenase, DBH-like 1 JBrowse link 1 22,124,498 22,206,565 RGD:13792537
G Moxd2 monooxygenase, DBH-like 2 JBrowse link 4 69,117,477 69,125,972 RGD:13792537
positive regulation of dopamine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Epas1 endothelial PAS domain protein 1 JBrowse link 6 10,306,508 10,385,239 RGD:5128877
G Park7 Parkinsonism associated deglycase JBrowse link 5 167,982,438 168,004,724 RGD:1624291
RGD:1600115
G Vps35 VPS35 retromer complex component JBrowse link 19 27,464,937 27,500,636 RGD:1624291
RGD:1600115
positive regulation of melanin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Appl1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 JBrowse link 16 2,560,103 2,602,035 RGD:1600115
RGD:1624291
G Asip agouti signaling protein JBrowse link 3 150,492,010 150,579,870 RGD:1624291
G Cdh3 cadherin 3 JBrowse link 19 38,668,957 38,719,801 RGD:1624291
RGD:1600115
G Gipc1 GIPC PDZ domain containing family, member 1 JBrowse link 19 24,786,604 24,798,231 RGD:1600115
RGD:1624291
G Pmel premelanosome protein JBrowse link 7 3,133,347 3,143,827 RGD:1624291
G Tyrp1 tyrosinase-related protein 1 JBrowse link 5 98,387,291 98,406,083 RGD:1624291
RGD:1600115
positive regulation of transcription from RNA polymerase II promoter involved in norepinephrine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hand2 heart and neural crest derivatives expressed 2 JBrowse link 16 36,371,489 36,373,551 RGD:1624291
regulation of melanin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Slc7a11 solute carrier family 7 member 11 JBrowse link 2 139,453,774 139,528,479 RGD:1624291
RGD:1600115
serotonin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddc dopa decarboxylase JBrowse link 14 91,905,919 91,996,816 RGD:5129182
G Tph2 tryptophan hydroxylase 2 JBrowse link 7 58,042,279 58,149,220 RGD:1600115
serotonin biosynthetic process from tryptophan term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 JBrowse link 7 123,599,264 123,608,436 RGD:11353778
G Tph1 tryptophan hydroxylase 1 JBrowse link 1 102,669,868 102,699,442 RGD:625621

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  biological_process 17928
    metabolic process 10678
      cellular metabolic process 9773
        cellular aromatic compound metabolic process 5091
          phenol-containing compound metabolic process 111
            phenol-containing compound biosynthetic process 47
              (+)-lariciresinol biosynthetic process 0
              (+)-pinoresinol biosynthetic process 0
              (+)-secoisolariciresinol biosynthetic process 0
              (-)-lariciresinol biosynthetic process 0
              (-)-pinoresinol biosynthetic process 0
              (-)-secoisolariciresinol biosynthetic process 0
              2-hydroxybenzoyl-CoA biosynthetic process 0
              4-hydroxyphenylacetate biosynthetic process 0
              DIF-1 biosynthetic process 0
              F-9775A biosynthetic process + 0
              F-9775B biosynthetic process + 0
              actinorhodin biosynthetic process 0
              aerobic phenol-containing compound biosynthetic process 0
              anaerobic phenol-containing compound biosynthetic process 0
              asperthecin biosynthetic process + 0
              averantin biosynthetic process 0
              catechol-containing compound biosynthetic process + 27
              diorcinol biosynthetic process + 0
              emericellin biosynthetic process + 0
              emodin biosynthetic process + 0
              endocrocin biosynthetic process + 0
              eugenol biosynthetic process 0
              ferulate biosynthetic process 0
              fonsecin biosynthetic process 0
              funalenone biosynthetic process 0
              gallate biosynthetic process 0
              melanin biosynthetic process + 18
              monodictyphenone biosynthetic process + 0
              neosartoricin biosynthetic process + 0
              novobiocin biosynthetic process 0
              o-orsellinic acid biosynthetic process + 0
              octopamine biosynthetic process 3
              olivetolic acid biosynthetic process 0
              orcinol biosynthetic process + 0
              p-cresol biosynthetic process 0
              phenol biosynthetic process 0
              phenolic phthiocerol biosynthetic process 0
              proanthocyanidin biosynthetic process + 0
              pyochelin biosynthetic process 0
              salicylic acid biosynthetic process + 0
              serotonin biosynthetic process + 4
              shamixanthone biosynthetic process 0
              sinapate biosynthetic process 0
              sinapate ester biosynthetic process + 0
              tyramine biosynthetic process 0
              vanillin biosynthetic process 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.