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ONTOLOGY REPORT - ANNOTATIONS


Term:monosaccharide biosynthetic process
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Accession:GO:0046364 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of monosaccharides, polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms.
Synonyms:exact_synonym: monosaccharide anabolism;   monosaccharide biosynthesis;   monosaccharide formation;   monosaccharide synthesis


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fructose biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sord sorbitol dehydrogenase JBrowse link 3 114,176,127 114,207,368 RGD:1624291
gluconeogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC094212.1 RGD:1600115
RGD:13792537
G Atf3 activating transcription factor 3 JBrowse link 13 109,817,892 109,849,632 RGD:1624291
G Atf4 activating transcription factor 4 JBrowse link 7 121,480,723 121,482,781 RGD:1624291
G Crtc2 CREB regulated transcription coactivator 2 JBrowse link 2 189,615,928 189,625,646 RGD:1624291
RGD:1600115
G Cry1 cryptochrome circadian regulator 1 JBrowse link 7 24,534,593 24,634,098 RGD:1624291
RGD:1600115
G Eno2 enolase 2 JBrowse link 4 157,285,192 157,294,090 RGD:2302795
G Fbp1 fructose-bisphosphatase 1 JBrowse link 17 396,175 417,480 RGD:2302851
RGD:13792537
RGD:1624291
RGD:1600115
RGD:2302970
G Fbp2 fructose-bisphosphatase 2 JBrowse link 17 372,554 389,918 RGD:2302851
RGD:13792537
RGD:1600115
RGD:2302970
G G6pc glucose-6-phosphatase, catalytic subunit JBrowse link 10 89,286,009 89,296,213 RGD:728661
RGD:13792537
RGD:1624291
RGD:1600115
RGD:2302970
RGD:2302851
RGD:2302850
G G6pc3 glucose 6 phosphatase catalytic subunit 3 JBrowse link 10 90,134,193 90,138,425 RGD:2302850
RGD:13792537
RGD:1600115
RGD:2302970
RGD:2302851
G Gapdh glyceraldehyde-3-phosphate dehydrogenase JBrowse link 4 157,676,336 157,680,322 RGD:2302795
RGD:13792662
G Gpd1 glycerol-3-phosphate dehydrogenase 1 JBrowse link 7 141,368,928 141,377,931 RGD:1624291
G Gpd2 glycerol-3-phosphate dehydrogenase 2 JBrowse link 3 43,223,892 43,359,069 RGD:1624291
RGD:1600115
G Gpi glucose-6-phosphate isomerase JBrowse link 1 90,063,411 90,091,287 RGD:13792537
G LOC100911515 triosephosphate isomerase-like JBrowse link 9 20,213,596 20,217,279 RGD:1600115
G Pc pyruvate carboxylase JBrowse link 1 219,759,157 219,859,854 RGD:2302851
RGD:13792537
RGD:1600115
RGD:2302971
G Pck1 phosphoenolpyruvate carboxykinase 1 JBrowse link 3 171,213,936 171,219,885 RGD:625518
RGD:13792537
RGD:1624291
RGD:8553288
RGD:1600115
RGD:2302971
RGD:2302970
RGD:2302851
RGD:2302850
G Pck2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) JBrowse link 15 34,216,735 34,224,357 RGD:2302851
RGD:1600115
RGD:2302971
RGD:2302970
G Per2 period circadian regulator 2 JBrowse link 9 98,555,154 98,597,362 RGD:1624291
RGD:1600115
G Pgam2 phosphoglycerate mutase 2 JBrowse link 14 86,045,005 86,047,116 RGD:2302795
G Pgk1 phosphoglycerate kinase 1 JBrowse link X 77,263,399 77,279,373 RGD:2302795
RGD:13792537
RGD:2302860
G Pgk2 phosphoglycerate kinase 2 JBrowse link 9 24,095,774 24,097,340 RGD:13792537
G Ppargc1a PPARG coactivator 1 alpha JBrowse link 14 63,095,291 63,190,688 RGD:9585757
G Rbp4 retinol binding protein 4 JBrowse link 1 256,806,476 256,813,678 RGD:1624291
G RGD1560402 similar to Phosphoglycerate kinase 1 JBrowse link 2 42,726,747 42,728,100 RGD:13792537
G Sds serine dehydratase JBrowse link 12 41,620,429 41,627,741 RGD:633956
RGD:1600115
G Slc39a14 solute carrier family 39 member 14 JBrowse link 15 51,982,872 52,029,841 RGD:1600115
RGD:1624291
G Tpi1 triosephosphate isomerase 1 JBrowse link 4 157,328,375 157,331,905 RGD:1600115
RGD:13792537
hexose biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chst15 carbohydrate sulfotransferase 15 JBrowse link 1 204,243,396 204,328,960 RGD:1624291
RGD:1600115
L-ascorbic acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akr1a1 aldo-keto reductase family 1 member A1 JBrowse link 5 135,482,068 135,498,693 RGD:13825440
RGD:13792537
RGD:1624291
G Gsto1 glutathione S-transferase omega 1 JBrowse link 1 267,607,437 267,617,387 RGD:70644
G Gulo gulonolactone (L-) oxidase JBrowse link 15 42,671,206 42,693,711 RGD:1600115
G Rgn regucalcin JBrowse link X 1,833,484 1,848,904 RGD:1624291
RGD:13792537
RGD:1600115
negative regulation of gluconeogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adipoq adiponectin, C1Q and collagen domain containing JBrowse link 11 81,330,845 81,344,488 RGD:1624291
RGD:1600115
G C1qtnf12 C1q and TNF related 12 JBrowse link 5 173,390,901 173,395,276 RGD:1624291
RGD:13792537
G C1qtnf3 C1q and TNF related 3 JBrowse link 2 60,920,160 60,942,586 RGD:1624291
G Clk2 CDC-like kinase 2 JBrowse link 2 188,476,789 188,488,809 RGD:1624291
G Cry1 cryptochrome circadian regulator 1 JBrowse link 7 24,534,593 24,634,098 RGD:1600115
RGD:1624291
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:1624291
G Erfe erythroferrone JBrowse link 9 98,505,136 98,513,005 RGD:13792537
G Fam3a FAM3 metabolism regulating signaling molecule A JBrowse link X 156,319,687 156,328,974 RGD:1600115
G Fam3c FAM3 metabolism regulating signaling molecule C JBrowse link 4 49,388,962 49,439,892 RGD:1600115
G Gck glucokinase JBrowse link 14 86,149,146 86,191,589 RGD:1600115
RGD:1624291
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:2306940
G Ins2 insulin 2 JBrowse link 1 215,856,967 215,858,034 RGD:1624291
G Lepr leptin receptor JBrowse link 5 120,503,475 120,682,281 RGD:1624291
G LOC259246 alpha-2u globulin PGCL1 RGD:1600115
G Maea macrophage erythroblast attacher JBrowse link 14 82,664,248 82,697,673 RGD:1600115
G Mst1 macrophage stimulating 1 JBrowse link 8 116,857,716 116,862,286 RGD:1624291
G Pgp phosphoglycolate phosphatase JBrowse link 10 13,836,105 13,838,731 RGD:10679995
RGD:1624291
G Serpina12 serpin family A member 12 JBrowse link 6 127,696,501 127,711,238 RGD:1624291
RGD:1600115
G Sik1 salt-inducible kinase 1 JBrowse link 20 10,670,747 10,680,279 RGD:1624291
RGD:1600115
G Soga1 suppressor of glucose, autophagy associated 1 JBrowse link 3 153,130,268 153,188,909 RGD:1624291
pentose biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G G6pd glucose-6-phosphate dehydrogenase JBrowse link X 156,274,800 156,293,935 RGD:1624291
G Pgd phosphogluconate dehydrogenase JBrowse link 5 165,966,128 165,982,327 RGD:1624291
positive regulation of gluconeogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arpp19 cAMP-regulated phosphoprotein 19 JBrowse link 8 81,949,577 81,972,054 RGD:1624291
G Ddb1 damage-specific DNA binding protein 1 JBrowse link 1 226,657,561 226,683,356 RGD:1600115
RGD:1624291
G Dgat2 diacylglycerol O-acyltransferase 2 JBrowse link 1 164,113,459 164,143,818 RGD:10400884
G Foxo1 forkhead box O1 JBrowse link 2 141,451,234 141,527,016 RGD:1624291
G Gcg glucagon JBrowse link 3 48,442,635 48,451,650 RGD:1600115
RGD:1624291
G Gpt glutamic--pyruvic transaminase JBrowse link 7 117,759,083 117,761,932 RGD:11342811
G Gpt2 glutamic--pyruvic transaminase 2 JBrowse link 19 22,599,003 22,633,529 RGD:11342811
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link 6 96,810,868 96,856,303 RGD:10445837
G Hnf4a hepatocyte nuclear factor 4, alpha JBrowse link 3 159,902,441 159,965,003 RGD:1624992
RGD:10445837
G Kat2a lysine acetyltransferase 2A JBrowse link 10 88,611,586 88,619,558 RGD:1600115
RGD:1624291
G Kat2b lysine acetyltransferase 2B JBrowse link 9 4,440,982 4,492,949 RGD:1624291
G Ppara peroxisome proliferator activated receptor alpha JBrowse link 7 126,618,872 126,687,282 RGD:1624291
G Ppp4r3a protein phosphatase 4, regulatory subunit 3A JBrowse link 6 125,040,803 125,083,496 RGD:1624291
G Ppp4r3b protein phosphatase 4, regulatory subunit 3B JBrowse link 14 113,570,150 113,618,138 RGD:1624291
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 2 54,857,688 54,893,404 RGD:8554594
G Ptpn2 protein tyrosine phosphatase, non-receptor type 2 JBrowse link 18 63,415,298 63,489,240 RGD:1624291
RGD:1600115
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:9585757
RGD:1600115
RGD:1624291
G Stk11 serine/threonine kinase 11 JBrowse link 7 12,440,751 12,457,513 RGD:2291956
G Supt20h SPT20 homolog, SAGA complex component JBrowse link 2 143,892,609 143,925,733 RGD:1624291
G Tcf7l2 transcription factor 7 like 2 JBrowse link 1 276,686,911 276,730,517 RGD:1624291
G Wdr5 WD repeat domain 5 JBrowse link 3 6,061,892 6,080,724 RGD:1600115
RGD:1624291
regulation of gluconeogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acadm acyl-CoA dehydrogenase medium chain JBrowse link 2 260,124,418 260,148,589 RGD:1624291
RGD:1600115
G Dgkq diacylglycerol kinase, theta JBrowse link 14 2,069,409 2,083,370 RGD:1624291
G Fbp1 fructose-bisphosphatase 1 JBrowse link 17 396,175 417,480 RGD:1600115
RGD:1624291
G Foxo1 forkhead box O1 JBrowse link 2 141,451,234 141,527,016 RGD:1624291
G Gnmt glycine N-methyltransferase JBrowse link 9 16,565,274 16,568,626 RGD:1624291
RGD:13792537
G Insr insulin receptor JBrowse link 12 1,682,527 1,816,414 RGD:14700925
G Lep leptin JBrowse link 4 56,337,695 56,351,818 RGD:1624291
G LOC100911564 glycine N-methyltransferase-like JBrowse link 9 16,314,136 16,317,575 RGD:13792537
G Nln neurolysin JBrowse link 2 34,086,970 34,185,835 RGD:1624291
RGD:1600115
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 JBrowse link 18 31,728,373 32,704,022 RGD:1624291
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase JBrowse link X 71,540,870 71,585,906 RGD:1624291
RGD:1600115
G Pdk2 pyruvate dehydrogenase kinase 2 JBrowse link 10 82,838,270 82,852,758 RGD:1600115
RGD:1624291
G Ranbp2 RAN binding protein 2 JBrowse link 20
20
28,027,054
28,365,538
28,076,664
28,375,676
RGD:1624291
G Sesn2 sestrin 2 JBrowse link 5 150,684,891 150,703,846 RGD:1624291
G Sirt7 sirtuin 7 JBrowse link 10 109,796,046 109,802,821 RGD:1600115
RGD:1624291
G Slc35b4 solute carrier family 35 member B4 JBrowse link 4 61,550,995 61,573,003 RGD:1624291
G Tcf7l2 transcription factor 7 like 2 JBrowse link 1 276,686,911 276,730,517 RGD:1624291
G Usp7 ubiquitin specific peptidase 7 JBrowse link 10 6,930,462 7,019,910 RGD:1600115
RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19439
    metabolic process 11641
      biosynthetic process 5989
        small molecule biosynthetic process 620
          monosaccharide biosynthetic process 91
            1,5-anhydro-D-fructose biosynthetic process 0
            2-dehydro-3-deoxy-D-gluconic acid biosynthetic process 0
            L-ascorbic acid biosynthetic process + 4
            galacturonate biosynthetic process + 0
            glucuronate biosynthetic process + 0
            hexose biosynthetic process + 85
            keto-3-deoxy-D-manno-octulosonic acid biosynthetic process 0
            pentose biosynthetic process + 2
            tetrose biosynthetic process + 0
Path 2
Term Annotations click to browse term
  biological_process 19439
    metabolic process 11641
      primary metabolic process 10482
        carbohydrate metabolic process 617
          monosaccharide metabolic process 286
            monosaccharide biosynthetic process 91
              1,5-anhydro-D-fructose biosynthetic process 0
              2-dehydro-3-deoxy-D-gluconic acid biosynthetic process 0
              L-ascorbic acid biosynthetic process + 4
              galacturonate biosynthetic process + 0
              glucuronate biosynthetic process + 0
              hexose biosynthetic process + 85
              keto-3-deoxy-D-manno-octulosonic acid biosynthetic process 0
              pentose biosynthetic process + 2
              tetrose biosynthetic process + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.