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ONTOLOGY REPORT - ANNOTATIONS


Term:sphingoid metabolic process
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Accession:GO:0046519 term browser browse the term
Definition:The chemical reactions and pathways involving sphingoids, any of a class of compounds comprising sphinganine and its homologues and stereoisomers, and derivatives of these compounds.
Synonyms:exact_synonym: sphingoid base metabolic process;   sphingoid base metabolism;   sphingoid metabolism


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3-keto-sphinganine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kdsr 3-ketodihydrosphingosine reductase JBrowse link 13 26,779,386 26,812,271 RGD:1624291
RGD:13792537
phytosphingosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acer3 alkaline ceramidase 3 JBrowse link 1 163,160,987 163,263,621 RGD:1624291
RGD:13792537
sphinganine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 JBrowse link 17 11,856,525 11,895,566 RGD:1624291
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 JBrowse link 6 111,334,408 111,417,960 RGD:1624291
sphinganine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Degs2 delta(4)-desaturase, sphingolipid 2 JBrowse link 6 132,591,968 132,608,600 RGD:1624291
sphingoid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sptlc3 serine palmitoyltransferase, long chain base subunit 3 JBrowse link 3 132,560,437 132,689,313 RGD:1624291
sphingosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abca2 ATP binding cassette subfamily A member 2 JBrowse link 3 2,648,787 2,668,770 RGD:1624291
RGD:1600115
G Acer1 alkaline ceramidase 1 JBrowse link 9 10,061,978 10,093,588 RGD:1624291
G Acer2 alkaline ceramidase 2 JBrowse link 5 105,230,540 105,279,732 RGD:1624291
G Acer3 alkaline ceramidase 3 JBrowse link 1 163,160,987 163,263,621 RGD:1624291
G Asah1 N-acylsphingosine amidohydrolase 1 JBrowse link 16 53,998,604 54,030,006 RGD:1600115
RGD:1624291
G Asah2 N-acylsphingosine amidohydrolase 2 JBrowse link 1 250,557,042 250,665,083 RGD:13838800
RGD:13792537
RGD:1624291
RGD:13838794
RGD:13838793
G Gba glucosylceramidase beta JBrowse link 2 188,511,781 188,522,602 RGD:1624291
G Sphk1 sphingosine kinase 1 JBrowse link 10 105,498,728 105,504,401 RGD:1624291
RGD:1600115
G Sphk2 sphingosine kinase 2 JBrowse link 1 101,692,972 101,700,604 RGD:1624291
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 JBrowse link 17 11,856,525 11,895,566 RGD:1624291
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 JBrowse link 6 111,334,408 111,417,960 RGD:1624291
sphingosine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asah2 N-acylsphingosine amidohydrolase 2 JBrowse link 1 250,557,042 250,665,083 RGD:1600115
RGD:1624291
G Plpp1 phospholipid phosphatase 1 JBrowse link 2 44,664,076 44,726,820 RGD:1624291
RGD:15090855
RGD:15090857
RGD:1600115
G Plpp2 phospholipid phosphatase 2 JBrowse link 7 13,062,168 13,070,281 RGD:1624291
RGD:1600115
G Plpp3 phospholipid phosphatase 3 JBrowse link 5 124,690,214 124,765,499 RGD:1624291
RGD:1600115
G Sgpp1 sphingosine-1-phosphate phosphatase 1 JBrowse link 6 98,675,324 98,696,492 RGD:1624291
G Sgpp2 sphingosine-1-phosphate phosphatase 2 JBrowse link 9 84,203,094 84,321,269 RGD:1624291
G Sphk1 sphingosine kinase 1 JBrowse link 10 105,498,728 105,504,401 RGD:1624291
RGD:1600115
G Sphk2 sphingosine kinase 2 JBrowse link 1 101,692,972 101,700,604 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19332
    metabolic process 11554
      nitrogen compound metabolic process 9892
        ammonium ion metabolic process 185
          sphingoid metabolic process 19
            3-keto-sphinganine metabolic process 1
            phytosphingosine metabolic process + 1
            sphinganine metabolic process + 3
            sphingoid biosynthetic process + 12
            sphingoid catabolic process + 0
            sphingosine metabolic process + 16
Path 2
Term Annotations click to browse term
  biological_process 19332
    metabolic process 11554
      primary metabolic process 10411
        lipid metabolic process 1300
          cellular lipid metabolic process 987
            membrane lipid metabolic process 183
              sphingolipid metabolic process 135
                sphingoid metabolic process 19
                  3-keto-sphinganine metabolic process 1
                  phytosphingosine metabolic process + 1
                  sphinganine metabolic process + 3
                  sphingoid biosynthetic process + 12
                  sphingoid catabolic process + 0
                  sphingosine metabolic process + 16
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.