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ONTOLOGY REPORT - ANNOTATIONS


Term:sphingoid biosynthetic process
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Accession:GO:0046520 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of sphingoids, any of a class of compounds comprising sphinganine and its homologues and stereoisomers, and derivatives of these compounds.
Synonyms:exact_synonym: sphingoid anabolism;   sphingoid biosynthesis;   sphingoid formation;   sphingoid synthesis


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sphingoid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SPTLC3 serine palmitoyltransferase long chain base subunit 3 JBrowse link 20 12,952,501 13,111,347 RGD:9068941
phytosphingosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACER3 alkaline ceramidase 3 JBrowse link 11 75,557,846 75,717,627 RGD:9068941
sphinganine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SPTLC1 serine palmitoyltransferase long chain base subunit 1 JBrowse link 9 91,185,574 91,213,003 RGD:9068941
G SPTLC2 serine palmitoyltransferase long chain base subunit 2 JBrowse link 14 77,266,545 77,370,663 RGD:9068941
sphingosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABCA2 ATP binding cassette subfamily A member 2 JBrowse link 9 137,039,264 137,057,527 RGD:9068941
G ACER1 alkaline ceramidase 1 JBrowse link 19 6,252,300 6,281,016 RGD:9068941
G ACER2 alkaline ceramidase 2 JBrowse link 9 19,706,716 19,751,057 RGD:9068941
G ACER3 alkaline ceramidase 3 JBrowse link 11 75,557,846 75,717,627 RGD:9068941
G ASAH1 N-acylsphingosine amidohydrolase 1 JBrowse link 8 14,226,156 14,254,155 RGD:9068941
G ASAH2 N-acylsphingosine amidohydrolase 2 JBrowse link 10 48,970,524 49,025,245 RGD:9068941
G SPHK1 sphingosine kinase 1 JBrowse link 17 75,875,530 75,886,481 RGD:9068941
G SPHK2 sphingosine kinase 2 JBrowse link 19 54,213,166 54,224,033 RGD:9068941
G SPTLC1 serine palmitoyltransferase long chain base subunit 1 JBrowse link 9 91,185,574 91,213,003 RGD:9068941
G SPTLC2 serine palmitoyltransferase long chain base subunit 2 JBrowse link 14 77,266,545 77,370,663 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15679
    metabolic process 10517
      nitrogen compound metabolic process 9204
        ammonium ion metabolic process 201
          sphingoid metabolic process 18
            sphingoid biosynthetic process 11
              phytosphingosine biosynthetic process 1
              sphinganine biosynthetic process 2
              sphingosine biosynthetic process 10
Path 2
Term Annotations click to browse term
  biological_process 15679
    metabolic process 10517
      primary metabolic process 9641
        lipid metabolic process 1313
          cellular lipid metabolic process 998
            membrane lipid metabolic process 204
              membrane lipid biosynthetic process 140
                sphingolipid biosynthetic process 100
                  sphingoid biosynthetic process 11
                    phytosphingosine biosynthetic process 1
                    sphinganine biosynthetic process 2
                    sphingosine biosynthetic process 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.