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ONTOLOGY REPORT - ANNOTATIONS


Term:sphingoid biosynthetic process
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Accession:GO:0046520 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of sphingoids, any of a class of compounds comprising sphinganine and its homologues and stereoisomers, and derivatives of these compounds.
Synonyms:exact_synonym: sphingoid anabolism;   sphingoid biosynthesis;   sphingoid formation;   sphingoid synthesis


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sphingoid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sptlc3 serine palmitoyltransferase long chain base subunit 3 JBrowse link NW_004955415 22,532,193 22,686,071 RGD:9068941
phytosphingosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acer3 alkaline ceramidase 3 JBrowse link NW_004955414 14,741,027 14,846,931 RGD:9068941
sphinganine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sptlc1 serine palmitoyltransferase long chain base subunit 1 JBrowse link NW_004955515 57,711 161,012 RGD:9068941
G Sptlc2 serine palmitoyltransferase long chain base subunit 2 JBrowse link NW_004955438 1,385,431 1,491,534 RGD:9068941
sphingosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abca2 ATP binding cassette subfamily A member 2 JBrowse link NW_004955513 5,035,879 5,051,140 RGD:9068941
G Acer1 alkaline ceramidase 1 JBrowse link NW_004955495 3,247,170 3,271,417 RGD:9068941
G Acer2 alkaline ceramidase 2 JBrowse link NW_004955434 21,786,857 21,810,648 RGD:9068941
G Acer3 alkaline ceramidase 3 JBrowse link NW_004955414 14,741,027 14,846,931 RGD:9068941
G Asah1 N-acylsphingosine amidohydrolase 1 JBrowse link NW_004955552 1,623,263 1,660,285 RGD:9068941
G Asah2 N-acylsphingosine amidohydrolase 2 JBrowse link NW_004955425 5,840,355 5,931,891 RGD:9068941
G Gba glucosylceramidase beta JBrowse link NW_004955545 1,682,097 1,689,373 RGD:9068941
G Sphk1 sphingosine kinase 1 JBrowse link NW_004955506 5,902,079 5,906,639 RGD:9068941
G Sphk2 sphingosine kinase 2 JBrowse link NW_004955559 1,921,479 1,929,450 RGD:9068941
G Sptlc1 serine palmitoyltransferase long chain base subunit 1 JBrowse link NW_004955515 57,711 161,012 RGD:9068941
G Sptlc2 serine palmitoyltransferase long chain base subunit 2 JBrowse link NW_004955438 1,385,431 1,491,534 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14546
    metabolic process 9943
      nitrogen compound metabolic process 8702
        ammonium ion metabolic process 193
          sphingoid metabolic process 19
            sphingoid biosynthetic process 12
              phytosphingosine biosynthetic process 1
              sphinganine biosynthetic process 2
              sphingosine biosynthetic process 11
Path 2
Term Annotations click to browse term
  biological_process 14546
    metabolic process 9943
      primary metabolic process 9116
        lipid metabolic process 1258
          cellular lipid metabolic process 957
            membrane lipid metabolic process 204
              membrane lipid biosynthetic process 143
                sphingolipid biosynthetic process 103
                  sphingoid biosynthetic process 12
                    phytosphingosine biosynthetic process 1
                    sphinganine biosynthetic process 2
                    sphingosine biosynthetic process 11
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.