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ONTOLOGY REPORT - ANNOTATIONS


Term:sphingoid biosynthetic process
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Accession:GO:0046520 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of sphingoids, any of a class of compounds comprising sphinganine and its homologues and stereoisomers, and derivatives of these compounds.
Synonyms:exact_synonym: sphingoid anabolism;   sphingoid biosynthesis;   sphingoid formation;   sphingoid synthesis


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phytosphingosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACER3 alkaline ceramidase 3 JBrowse link 21 21,711,315 21,863,409 RGD:13508589
sphinganine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SPTLC1 serine palmitoyltransferase long chain base subunit 1 JBrowse link 1 94,997,240 95,062,424 RGD:13508589
G SPTLC2 serine palmitoyltransferase long chain base subunit 2 JBrowse link 8 50,291,797 50,401,202 RGD:13508589
sphingosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACER1 alkaline ceramidase 1 JBrowse link 20 53,819,224 53,838,183 RGD:13508589
G ACER2 alkaline ceramidase 2 JBrowse link 11 39,190,873 39,223,590 RGD:13508589
G ACER3 alkaline ceramidase 3 JBrowse link 21 21,711,315 21,863,409 RGD:13508589
G ASAH1 N-acylsphingosine amidohydrolase 1 JBrowse link 16 41,297,215 41,335,521 RGD:13508589
G ASAH2 N-acylsphingosine amidohydrolase 2 JBrowse link 26 37,136,601 37,228,215 RGD:13508589
G GBA glucosylceramidase beta JBrowse link 7 42,317,704 42,322,285 RGD:13508589
G SPHK1 sphingosine kinase 1 JBrowse link 9 4,311,698 4,314,773 RGD:13508589
G SPHK2 sphingosine kinase 2 JBrowse link 1 107,681,425 107,689,790 RGD:13508589
G SPTLC1 serine palmitoyltransferase long chain base subunit 1 JBrowse link 1 94,997,240 95,062,424 RGD:13508589
G SPTLC2 serine palmitoyltransferase long chain base subunit 2 JBrowse link 8 50,291,797 50,401,202 RGD:13508589

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 13313
    metabolic process 8295
      nitrogen compound metabolic process 7115
        ammonium ion metabolic process 98
          sphingoid metabolic process 12
            sphingoid biosynthetic process 10
              phytosphingosine biosynthetic process 1
              sphinganine biosynthetic process 2
              sphingosine biosynthetic process 10
Path 2
Term Annotations click to browse term
  biological_process 13313
    metabolic process 8295
      primary metabolic process 7521
        lipid metabolic process 837
          cellular lipid metabolic process 622
            membrane lipid metabolic process 134
              membrane lipid biosynthetic process 96
                sphingolipid biosynthetic process 61
                  sphingoid biosynthetic process 10
                    phytosphingosine biosynthetic process 1
                    sphinganine biosynthetic process 2
                    sphingosine biosynthetic process 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.