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ONTOLOGY REPORT - ANNOTATIONS


Term:sphingoid biosynthetic process
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Accession:GO:0046520 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of sphingoids, any of a class of compounds comprising sphinganine and its homologues and stereoisomers, and derivatives of these compounds.
Synonyms:exact_synonym: sphingoid anabolism;   sphingoid biosynthesis;   sphingoid formation;   sphingoid synthesis


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sphingoid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SPTLC3 serine palmitoyltransferase long chain base subunit 3 JBrowse link 20 13,008,972 13,169,103 RGD:2290271
phytosphingosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACER3 alkaline ceramidase 3 JBrowse link 11 76,860,888 77,026,797 RGD:2290271
sphinganine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SPTLC1 serine palmitoyltransferase long chain base subunit 1 JBrowse link 9 92,031,141 92,115,413 RGD:2290271
G SPTLC2 serine palmitoyltransferase long chain base subunit 2 JBrowse link 14 77,505,997 77,616,767 RGD:2290271
sphingosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABCA2 ATP binding cassette subfamily A member 2 JBrowse link 9 137,007,234 137,028,922 RGD:2290271
G ACER1 alkaline ceramidase 1 JBrowse link 19 6,306,142 6,360,368 RGD:2290271
G ACER2 alkaline ceramidase 2 JBrowse link 9 19,408,927 19,455,173 RGD:2290271
G ACER3 alkaline ceramidase 3 JBrowse link 11 76,860,888 77,026,797 RGD:2290271
G ASAH1 N-acylsphingosine amidohydrolase 1 JBrowse link 8 18,055,992 18,084,961 RGD:2290271
G ASAH2 N-acylsphingosine amidohydrolase 2 JBrowse link 10 50,184,861 50,251,564 RGD:2290271
G ASAH2B N-acylsphingosine amidohydrolase 2B JBrowse link 10 50,739,936 50,759,255 RGD:2290271
G GBA glucosylceramidase beta JBrowse link 1 155,234,452 155,244,627 RGD:2290271
G SPHK1 sphingosine kinase 1 JBrowse link 17 76,383,204 76,387,855 RGD:2290271
G SPHK2 sphingosine kinase 2 JBrowse link 19 48,619,291 48,630,407 RGD:2290271
G SPTLC1 serine palmitoyltransferase long chain base subunit 1 JBrowse link 9 92,031,141 92,115,413 RGD:2290271
G SPTLC2 serine palmitoyltransferase long chain base subunit 2 JBrowse link 14 77,505,997 77,616,767 RGD:2290271

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17988
    metabolic process 11592
      nitrogen compound metabolic process 10130
        ammonium ion metabolic process 213
          sphingoid metabolic process 20
            sphingoid biosynthetic process 13
              phytosphingosine biosynthetic process 1
              sphinganine biosynthetic process 2
              sphingosine biosynthetic process 12
Path 2
Term Annotations click to browse term
  biological_process 17988
    metabolic process 11592
      primary metabolic process 10618
        lipid metabolic process 1425
          cellular lipid metabolic process 1083
            membrane lipid metabolic process 213
              membrane lipid biosynthetic process 146
                sphingolipid biosynthetic process 106
                  sphingoid biosynthetic process 13
                    phytosphingosine biosynthetic process 1
                    sphinganine biosynthetic process 2
                    sphingosine biosynthetic process 12
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.