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ONTOLOGY REPORT - ANNOTATIONS


Term:sphingoid biosynthetic process
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Accession:GO:0046520 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of sphingoids, any of a class of compounds comprising sphinganine and its homologues and stereoisomers, and derivatives of these compounds.
Synonyms:exact_synonym: sphingoid anabolism;   sphingoid biosynthesis;   sphingoid formation;   sphingoid synthesis


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sphingoid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sptlc3 serine palmitoyltransferase, long chain base subunit 3 JBrowse link 2 139,493,913 139,637,061 RGD:2290270
phytosphingosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acer3 alkaline ceramidase 3 JBrowse link 7 98,213,808 98,321,208 RGD:2290270
sphinganine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 JBrowse link 13 53,332,748 53,377,417 RGD:2290270
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 JBrowse link 12 87,305,058 87,388,355 RGD:2290270
sphingosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abca2 ATP-binding cassette, sub-family A (ABC1), member 2 JBrowse link 2 25,428,599 25,448,544 RGD:2290270
G Acer1 alkaline ceramidase 1 JBrowse link 17 56,953,490 56,982,126 RGD:2290270
G Acer2 alkaline ceramidase 2 JBrowse link 4 86,874,348 86,932,524 RGD:2290270
G Acer3 alkaline ceramidase 3 JBrowse link 7 98,213,808 98,321,208 RGD:2290270
G Asah1 N-acylsphingosine amidohydrolase 1 JBrowse link 8 41,340,646 41,397,644 RGD:2290270
G Asah2 N-acylsphingosine amidohydrolase 2 JBrowse link 19 31,984,646 32,103,140 RGD:2290270
G Gba glucosidase, beta, acid JBrowse link 3 89,202,905 89,208,873 RGD:2290270
G Sphk1 sphingosine kinase 1 JBrowse link 11 116,530,836 116,536,675 RGD:2290270
G Sphk2 sphingosine kinase 2 JBrowse link 7 45,709,463 45,718,002 RGD:2290270
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 JBrowse link 13 53,332,748 53,377,417 RGD:2290270
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 JBrowse link 12 87,305,058 87,388,355 RGD:2290270

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23015
    metabolic process 10332
      nitrogen compound metabolic process 8625
        ammonium ion metabolic process 172
          sphingoid metabolic process 17
            sphingoid biosynthetic process 12
              phytosphingosine biosynthetic process 1
              sphinganine biosynthetic process 2
              sphingosine biosynthetic process 11
Path 2
Term Annotations click to browse term
  biological_process 23015
    metabolic process 10332
      primary metabolic process 9169
        lipid metabolic process 1258
          cellular lipid metabolic process 927
            membrane lipid metabolic process 166
              membrane lipid biosynthetic process 117
                sphingolipid biosynthetic process 80
                  sphingoid biosynthetic process 12
                    phytosphingosine biosynthetic process 1
                    sphinganine biosynthetic process 2
                    sphingosine biosynthetic process 11
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.