Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:sphingoid biosynthetic process
go back to main search page
Accession:GO:0046520 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of sphingoids, any of a class of compounds comprising sphinganine and its homologues and stereoisomers, and derivatives of these compounds.
Synonyms:exact_synonym: sphingoid anabolism;   sphingoid biosynthesis;   sphingoid formation;   sphingoid synthesis


show annotations for term's descendants       view all columns           Sort by:
 
sphingoid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sptlc3 serine palmitoyltransferase, long chain base subunit 3 JBrowse link 3 132,560,437 132,689,313 RGD:1624291
phytosphingosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acer3 alkaline ceramidase 3 JBrowse link 1 163,160,987 163,263,621 RGD:1624291
RGD:13792537
sphinganine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 JBrowse link 17 11,856,525 11,895,566 RGD:1624291
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 JBrowse link 6 111,334,408 111,417,960 RGD:1624291
sphingosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abca2 ATP binding cassette subfamily A member 2 JBrowse link 3 2,648,787 2,668,770 RGD:1624291
RGD:1600115
G Acer1 alkaline ceramidase 1 JBrowse link 9 10,061,978 10,093,588 RGD:1624291
G Acer2 alkaline ceramidase 2 JBrowse link 5 105,230,540 105,279,732 RGD:1624291
G Acer3 alkaline ceramidase 3 JBrowse link 1 163,160,987 163,263,621 RGD:1624291
G Asah1 N-acylsphingosine amidohydrolase 1 JBrowse link 16 53,998,604 54,030,006 RGD:1600115
RGD:1624291
G Asah2 N-acylsphingosine amidohydrolase 2 JBrowse link 1 250,557,042 250,665,083 RGD:13838800
RGD:13792537
RGD:1624291
RGD:13838794
RGD:13838793
G Gba glucosylceramidase beta JBrowse link 2 188,511,781 188,522,602 RGD:1624291
G Sphk1 sphingosine kinase 1 JBrowse link 10 105,498,728 105,504,401 RGD:1624291
RGD:1600115
G Sphk2 sphingosine kinase 2 JBrowse link 1 101,692,972 101,700,604 RGD:1624291
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 JBrowse link 17 11,856,525 11,895,566 RGD:1624291
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 JBrowse link 6 111,334,408 111,417,960 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19332
    metabolic process 11554
      nitrogen compound metabolic process 9892
        ammonium ion metabolic process 185
          sphingoid metabolic process 19
            sphingoid biosynthetic process 12
              phytosphingosine biosynthetic process 1
              sphinganine biosynthetic process 2
              sphingosine biosynthetic process 11
Path 2
Term Annotations click to browse term
  biological_process 19332
    metabolic process 11554
      primary metabolic process 10411
        lipid metabolic process 1300
          cellular lipid metabolic process 987
            membrane lipid metabolic process 183
              membrane lipid biosynthetic process 124
                sphingolipid biosynthetic process 83
                  sphingoid biosynthetic process 12
                    phytosphingosine biosynthetic process 1
                    sphinganine biosynthetic process 2
                    sphingosine biosynthetic process 11
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.