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ONTOLOGY REPORT - ANNOTATIONS


Term:photoreceptor cell differentiation
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Accession:GO:0046530 term browser browse the term
Definition:The specialization of organization of a photoreceptor, a cell that responds to incident electromagnetic radiation, particularly visible light. An example of this process is found in Drosophila melanogaster.
Synonyms:alt_id: GO:0007467


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camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dscam DS cell adhesion molecule JBrowse link 11 37,004,776 37,599,866 RGD:1600115
G Prom1 prominin 1 JBrowse link 14 71,532,321 71,637,400 RGD:1624291
RGD:13792537
G Rom1 retinal outer segment membrane protein 1 JBrowse link 1 225,126,732 225,128,740 RGD:1624291
RGD:1600115
G Sdk2 sidekick cell adhesion molecule 2 JBrowse link 10 102,299,593 102,576,554 RGD:1624291
RGD:1600115
G Slc4a7 solute carrier family 4 member 7 JBrowse link 15 11,832,611 11,912,923 RGD:1624291
G Ttc8 tetratricopeptide repeat domain 8 JBrowse link 6 122,920,308 122,974,525 RGD:1624291
RGD:1600115
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ihh Indian hedgehog signaling molecule JBrowse link 9 82,208,223 82,214,440 RGD:1624291
RGD:1600115
eye photoreceptor cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahi1 Abelson helper integration site 1 JBrowse link 1 16,478,127 16,601,769 RGD:1624291
G Crb1 crumbs cell polarity complex component 1 JBrowse link 13 56,270,519 56,462,893 RGD:1624291
RGD:1600115
G Fscn2 fascin actin-bundling protein 2, retinal JBrowse link 10 109,528,307 109,540,675 RGD:1624291
RGD:1600115
G Gabrr2 gamma-aminobutyric acid type A receptor subunit rho 2 JBrowse link 5 48,303,366 48,341,571 RGD:1624291
G Gnat1 G protein subunit alpha transducin 1 JBrowse link 8 116,433,302 116,438,038 RGD:1624291
RGD:1600115
G Gngt1 G protein subunit gamma transducin 1 JBrowse link 4 28,972,339 28,975,419 RGD:1624291
RGD:1600115
G Mfrp membrane frizzled-related protein JBrowse link 8 48,437,720 48,443,421 RGD:1624291
RGD:1600115
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 JBrowse link 8 64,797,518 64,801,587 RGD:1624291
RGD:1600115
G Olfm3 olfactomedin 3 JBrowse link 2 217,779,983 218,005,710 RGD:633402
G Pax6 paired box 6 JBrowse link 3 95,700,241 95,728,682 RGD:1624291
RGD:1600115
G Pdgfb platelet derived growth factor subunit B JBrowse link 7 121,215,458 121,233,092 RGD:1624291
G Prdm1 PR/SET domain 1 JBrowse link 20 49,464,921 49,556,623 RGD:1624291
RGD:1600115
G Prkci protein kinase C, iota JBrowse link 2 115,941,998 116,002,550 RGD:1624291
RGD:1600115
G Psen1 presenilin 1 JBrowse link 6 107,169,514 107,221,000 RGD:724403
G Rbp3 retinol binding protein 3 JBrowse link 16 10,277,775 10,286,243 RGD:633871
G Rdh13 retinol dehydrogenase 13 JBrowse link 1 72,956,017 72,983,811 RGD:1624291
RGD:1600115
G Rorb RAR-related orphan receptor B JBrowse link 1 234,252,757 234,442,597 RGD:1624291
RGD:1600115
G Rpgr retinitis pigmentosa GTPase regulator JBrowse link X 14,271,012 14,331,745 RGD:1624291
G Rpgrip1 RPGR interacting protein 1 JBrowse link 15 28,521,287 28,575,046 RGD:1624291
G Th tyrosine hydroxylase JBrowse link 1 216,073,034 216,080,287 RGD:1624291
RGD:1600115
G Tulp1 TUB like protein 1 JBrowse link 20 7,931,673 7,943,601 RGD:1624291
RGD:1600115
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:1624291
eye photoreceptor cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agtpbp1 ATP/GTP binding protein 1 JBrowse link 17 5,510,009 5,614,416 RGD:1600115
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha JBrowse link 8 109,481,352 109,621,462 RGD:1624291
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:1624291
RGD:1600115
eye photoreceptor cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Otx2 orthodenticle homeobox 2 JBrowse link 15 25,500,037 25,511,619 RGD:1624291
negative regulation of eye photoreceptor cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dio3 iodothyronine deiodinase 3 JBrowse link 6 134,627,278 134,629,139 RGD:1624291
G Thrb thyroid hormone receptor beta JBrowse link 15 8,890,578 9,239,815 RGD:1600115
RGD:1624291
negative regulation of photoreceptor cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cntf ciliary neurotrophic factor JBrowse link 1 229,599,009 229,601,032 RGD:1624291
RGD:1600115
G Dlx1 distal-less homeobox 1 JBrowse link 3 58,164,931 58,169,521 RGD:1600115
RGD:1624291
G Dlx2 distal-less homeobox 2 JBrowse link 3 58,180,088 58,181,971 RGD:1600115
RGD:1624291
G Notch1 notch receptor 1 JBrowse link 3 3,905,562 3,951,015 RGD:1624291
RGD:1600115
G Sox8 SRY-box transcription factor 8 JBrowse link 10 14,932,348 14,937,336 RGD:1624291
RGD:1600115
G Sox9 SRY-box transcription factor 9 JBrowse link 10 101,288,528 101,294,030 RGD:1624291
RGD:1600115
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Casz1 castor zinc finger 1 JBrowse link 5 165,625,119 165,777,053 RGD:1624291
photoreceptor cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arl3 ADP ribosylation factor like GTPase 3 JBrowse link 1 266,287,015 266,333,099 RGD:1600115
RGD:1624291
G Dcx doublecortin JBrowse link X 115,098,675 115,175,515 RGD:13792537
G Rp1 RP1, axonemal microtubule associated JBrowse link 5 15,005,028 15,060,508 RGD:1624291
RGD:13792537
G Rp1l1 RP1 like 1 JBrowse link 15 47,344,380 47,384,461 RGD:1624291
RGD:13792537
G Tug1 taurine up-regulated 1 JBrowse link 14 83,878,757 83,885,791 RGD:1624291
photoreceptor cell morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bbs1 Bardet-Biedl syndrome 1 JBrowse link 1 220,146,084 220,165,545 RGD:1624291
RGD:1600115
G Cabp4 calcium binding protein 4 JBrowse link 1 219,383,452 219,388,009 RGD:1624291
RGD:1600115
G Cdhr1 cadherin-related family member 1 JBrowse link 16 14,328,161 14,348,049 RGD:1624291
RGD:1600115
G Grk1 G protein-coupled receptor kinase 1 JBrowse link 16 81,153,489 81,165,442 RGD:1624291
G MGC94199 similar to RIKEN cDNA 2610301B20; EST AI428449 JBrowse link 5
5
24,145,829
23,358,464
24,165,467
23,377,697
RGD:1600115
RGD:1624291
G Rabl2 RAB, member of RAS oncogene family like 2 JBrowse link 7 130,556,056 130,564,764 RGD:1624291
RGD:1600115
photoreceptor cell outer segment organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahi1 Abelson helper integration site 1 JBrowse link 1 16,478,127 16,601,769 RGD:1600115
RGD:1624291
G Bbs4 Bardet-Biedl syndrome 4 JBrowse link 8 64,115,005 64,154,432 RGD:1624291
RGD:1600115
G Cdhr1 cadherin-related family member 1 JBrowse link 16 14,328,161 14,348,049 RGD:1624291
RGD:1600115
G Cngb1 cyclic nucleotide gated channel subunit beta 1 JBrowse link 19 10,142,440 10,206,618 RGD:1624291
G Ift140 intraflagellar transport 140 JBrowse link 10 14,373,668 14,461,509 RGD:1624291
RGD:1600115
G Ift20 intraflagellar transport 20 JBrowse link 10 65,805,808 65,811,353 RGD:1624291
RGD:1600115
G Nphp1 nephrocystin 1 JBrowse link 3 120,316,048 120,370,089 RGD:1624291
G Nphp4 nephrocystin 4 JBrowse link 5 169,647,581 169,744,662 RGD:1624291
RGD:1600115
G Pcare photoreceptor cilium actin regulator JBrowse link 6 23,337,507 23,346,232 RGD:1624291
RGD:13792537
G Rp1 RP1, axonemal microtubule associated JBrowse link 5 15,005,028 15,060,508 RGD:1624291
RGD:1600115
G Tmem67 transmembrane protein 67 JBrowse link 5 25,666,138 25,721,056 RGD:11535084
positive regulation of photoreceptor cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Crx cone-rod homeobox JBrowse link 1 77,744,593 77,758,913 RGD:1600973
G Shh sonic hedgehog signaling molecule JBrowse link 4 718,538 727,691 RGD:2306313
positive regulation of rhodopsin gene expression term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 JBrowse link 8 64,797,518 64,801,587 RGD:1624291
RGD:1600115
G Nrl neural retina leucine zipper JBrowse link 15 34,197,115 34,201,408 RGD:1624291
RGD:1600115
regulation of rhodopsin gene expression term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nrl neural retina leucine zipper JBrowse link 15 34,197,115 34,201,408 RGD:1624291
RGD:13792537
G Rpe65 retinoid isomerohydrolase RPE65 JBrowse link 2 266,141,581 266,169,197 RGD:1624291
RGD:1600115
retinal cone cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahi1 Abelson helper integration site 1 JBrowse link 1 16,478,127 16,601,769 RGD:1624291
G Cabp4 calcium binding protein 4 JBrowse link 1 219,383,452 219,388,009 RGD:1624291
RGD:1600115
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 JBrowse link 9 43,807,412 43,858,225 RGD:1624291
G Dio3 iodothyronine deiodinase 3 JBrowse link 6 134,627,278 134,629,139 RGD:1624291
G Gnat2 G protein subunit alpha transducin 2 JBrowse link 2 210,880,754 210,890,765 RGD:1624291
RGD:1600115
G Hcn1 hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 JBrowse link 2 50,099,576 50,499,799 RGD:1624291
RGD:1600115
G Mir124-1 microRNA 124-1 JBrowse link 15 47,964,298 47,964,382 RGD:1624291
G Mir124-2 microRNA 124-2 JBrowse link 2 102,311,603 102,311,711 RGD:1624291
G Mir183 microRNA 183 JBrowse link 4 57,463,569 57,463,678 RGD:1624291
G Mir96 microRNA 96 JBrowse link 4 57,463,366 57,463,471 RGD:1624291
G Pde6c phosphodiesterase 6C JBrowse link 1 256,822,099 256,885,879 RGD:1624291
RGD:1600115
G Rorb RAR-related orphan receptor B JBrowse link 1 234,252,757 234,442,597 RGD:1600115
RGD:1624291
G Rp1 RP1, axonemal microtubule associated JBrowse link 5 15,005,028 15,060,508 RGD:1624291
RGD:1600115
G Thrb thyroid hormone receptor beta JBrowse link 15 8,890,578 9,239,815 RGD:1600115
RGD:1624291
G Thy1 Thy-1 cell surface antigen JBrowse link 8 48,382,121 48,387,271 RGD:1624291
RGD:13792537
RGD:1600115
G Ush1c USH1 protein network component harmonin JBrowse link 1 102,207,096 102,256,779 RGD:13792537
retinal rod cell development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahi1 Abelson helper integration site 1 JBrowse link 1 16,478,127 16,601,769 RGD:1624291
G Alms1 ALMS1, centrosome and basal body associated protein JBrowse link 4 117,371,544 117,472,310 RGD:1624291
G Bbs4 Bardet-Biedl syndrome 4 JBrowse link 8 64,115,005 64,154,432 RGD:1624291
RGD:1600115
G Bhlhe23 basic helix-loop-helix family, member e23 JBrowse link 3 176,279,997 176,282,211 RGD:1624291
RGD:1600115
G Ccdc66 coiled-coil domain containing 66 JBrowse link 16 3,107,119 3,139,188 RGD:1624291
RGD:1600115
G Miat myocardial infarction associated transcript JBrowse link 12 50,447,251 50,461,859 RGD:1624291
G Naglu N-acetyl-alpha-glucosaminidase JBrowse link 10 88,979,363 88,986,879 RGD:1624291
RGD:1600115
G Nrl neural retina leucine zipper JBrowse link 15 34,197,115 34,201,408 RGD:1624291
RGD:13792537
G Ntrk2 neurotrophic receptor tyrosine kinase 2 JBrowse link 17 5,934,651 6,245,778 RGD:1624291
RGD:1600115
G Rorb RAR-related orphan receptor B JBrowse link 1 234,252,757 234,442,597 RGD:1600115
RGD:1624291
G Rp1 RP1, axonemal microtubule associated JBrowse link 5 15,005,028 15,060,508 RGD:1624291
RGD:1600115
G Trpm1 transient receptor potential cation channel, subfamily M, member 1 JBrowse link 1 124,983,391 125,101,759 RGD:1624291
RGD:1600115
retinal rod cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ptn pleiotrophin JBrowse link 4 64,239,156 64,330,996 RGD:9831439
G Sox8 SRY-box transcription factor 8 JBrowse link 10 14,932,348 14,937,336 RGD:1624291
RGD:1600115
G Sox9 SRY-box transcription factor 9 JBrowse link 10 101,288,528 101,294,030 RGD:1624291
RGD:1600115
retinal rod cell fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Casz1 castor zinc finger 1 JBrowse link 5 165,625,119 165,777,053 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19317
    cellular process 17226
      cellular developmental process 4428
        cell differentiation 4205
          neuron differentiation 1574
            photoreceptor cell differentiation 83
              eye photoreceptor cell differentiation + 60
              negative regulation of photoreceptor cell differentiation + 9
              ocellus photoreceptor cell differentiation + 0
              photoreceptor cell development + 62
              photoreceptor cell fate commitment + 3
              positive regulation of photoreceptor cell differentiation + 2
              regulation of photoreceptor cell differentiation + 11
Path 2
Term Annotations click to browse term
  biological_process 19317
    developmental process 6647
      anatomical structure development 6113
        multicellular organism development 5583
          system development 5101
            nervous system development 2597
              neurogenesis 1882
                generation of neurons 1747
                  neuron differentiation 1574
                    photoreceptor cell differentiation 83
                      eye photoreceptor cell differentiation + 60
                      negative regulation of photoreceptor cell differentiation + 9
                      ocellus photoreceptor cell differentiation + 0
                      photoreceptor cell development + 62
                      photoreceptor cell fate commitment + 3
                      positive regulation of photoreceptor cell differentiation + 2
                      regulation of photoreceptor cell differentiation + 11
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.