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ONTOLOGY REPORT - ANNOTATIONS


Term:retinal cell programmed cell death
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Accession:GO:0046666 term browser browse the term
Definition:Programmed cell death that occurs in the developing retina.
Synonyms:exact_synonym: programmed cell death, retina cells;   programmed cell death, retinal cells;   retina cell programmed cell death;   retina programmed cell death;   retinal programmed cell death


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retinal cell programmed cell death term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator IEA
ISO
GO_REF:0000107
MGI:1857429 (MGI:2677551|PMID:14517994)
Ensembl
RGD
PMID:14517994 GO_REF:0000107, MGI:2677551 NCBI chr 1:101,451,801...101,457,207
Ensembl chr 1:101,451,802...101,457,207
JBrowse link
G Faslg Fas ligand ISO MGI:1856384 (MGI:2677551|PMID:14517994) RGD PMID:14517994 MGI:2677551 NCBI chr13:79,696,811...79,717,581
Ensembl chr13:79,698,445...79,705,705
JBrowse link
G Slc4a7 solute carrier family 4 member 7 ISO MGI:2682641 (MGI:2680888|PMID:12808454) RGD PMID:12808454 MGI:2680888 NCBI chr15:11,832,611...11,912,923
Ensembl chr15:11,836,286...11,912,916
JBrowse link
negative regulation of retinal cell programmed cell death term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator IEA
ISO
GO_REF:0000107
MGI:1857430 (MGI:1336407|PMID:10321489)
Ensembl
RGD
PMID:10321489 GO_REF:0000107, MGI:1336407 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 ISO MGI:3054837 (MGI:3054140|PMID:15363390) RGD PMID:15363390 MGI:3054140 NCBI chr 3:176,279,997...176,282,211
Ensembl chr 3:176,279,997...176,282,211
JBrowse link
positive regulation of retinal cell programmed cell death term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp6 caspase 6 IMP RGD PMID:12917395 RGD:2301324 NCBI chr 2:235,341,326...235,353,715
Ensembl chr 2:235,341,365...235,353,967
Ensembl chr 2:235,341,365...235,353,967
JBrowse link
regulation of retinal cell programmed cell death term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor ISO (MGI:2155023|PMID:11747369) RGD PMID:11747369 MGI:2155023 NCBI chr 3:100,768,637...100,819,216
Ensembl chr 3:100,768,637...100,819,210
JBrowse link
G Cntf ciliary neurotrophic factor IEA
ISO
GO_REF:0000107
(MGI:2155023|PMID:11747369)
Ensembl
RGD
PMID:11747369 GO_REF:0000107, MGI:2155023 NCBI chr 1:229,599,009...229,601,032
Ensembl chr 1:229,599,009...229,601,032
JBrowse link
G Fgf2 fibroblast growth factor 2 ISO (MGI:2155023|PMID:11747369) RGD PMID:11747369 MGI:2155023 NCBI chr 2:124,081,072...124,134,133
Ensembl chr 2:124,081,072...124,134,681
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    cellular process 18792
      cellular developmental process 4457
        programmed cell death involved in cell development 18
          retinal cell programmed cell death 9
            compound eye retinal cell programmed cell death + 0
            negative regulation of retinal cell programmed cell death + 2
            positive regulation of retinal cell programmed cell death + 1
            regulation of retinal cell programmed cell death + 6
Path 2
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure development 6268
        multicellular organism development 5743
          system development 5279
            animal organ development 4033
              animal organ morphogenesis 1151
                sensory organ morphogenesis 321
                  eye morphogenesis 187
                    retinal cell programmed cell death 9
                      compound eye retinal cell programmed cell death + 0
                      negative regulation of retinal cell programmed cell death + 2
                      positive regulation of retinal cell programmed cell death + 1
                      regulation of retinal cell programmed cell death + 6
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.