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ONTOLOGY REPORT - ANNOTATIONS


Term:pore complex assembly
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Accession:GO:0046931 term browser browse the term
Definition:The aggregation, arrangement and bonding together of a set of components to form a pore complex. A pore complex is a small opening in a membrane that allows the passage of liquids and/or gases.
Comment:See also the cellular component term 'pore complex ; GO:0046930'.
Synonyms:exact_synonym: pore biosynthesis;   pore formation
 related_synonym: pore complex biogenesis;   pore-forming toxin activity


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pore complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam10 ADAM metallopeptidase domain 10 ISO (PMID:30463011)
(MGI:MGI:6316557|PMID:30463011)
RGD PMID:30463011 MGI:MGI:6316557 NCBI chr 8:77,107,355...77,237,483
Ensembl chr 8:77,107,536...77,237,483
JBrowse link
G Afdn afadin, adherens junction formation factor IEA
ISO
GO_REF:0000107
(MGI:MGI:6316557|PMID:30463011)
(PMID:30463011)
Ensembl
RGD
PMID:30463011 GO_REF:0000107, MGI:MGI:6316557 NCBI chr 1:53,713,873...53,861,918
Ensembl chr 1:53,715,693...53,802,658
JBrowse link
G Ano6 anoctamin 6 ISO (PMID:25651887) RGD PMID:25651887 NCBI chr 7:137,142,063...137,335,208
Ensembl chr 7:137,142,170...137,335,208
JBrowse link
G Atp5mc1 ATP synthase membrane subunit c locus 1 IDA RGD PMID:11588987 RGD:13800751 NCBI chr10:83,895,941...83,898,640
Ensembl chr10:83,895,947...83,898,527
JBrowse link
G Atp5mc2 ATP synthase membrane subunit c locus 2 IDA RGD PMID:11588987 RGD:13800751 NCBI chr 7:144,264,207...144,272,578
Ensembl chr 7:144,264,199...144,272,578
JBrowse link
G Atp5mc3 ATP synthase membrane subunit c locus 3 IDA RGD PMID:11588987 RGD:13800751 NCBI chr 3:60,811,218...60,813,903
Ensembl chr 3:60,811,210...60,813,869
JBrowse link
G Bad BCL2-associated agonist of cell death ISS
ISO
GO_REF:0000024
(PMID:19667065), (PMID:21081150)
UniProt
RGD
PMID:19667065, PMID:21081150 GO_REF:0000024 NCBI chr 1:222,198,516...222,207,459
Ensembl chr 1:222,198,534...222,207,453
JBrowse link
G Cct3 chaperonin containing TCP1 subunit 3 ISO (MGI:MGI:5492256|PMID:23716698) RGD PMID:23716698 MGI:MGI:5492256 NCBI chr 2:187,669,051...187,693,610
Ensembl chr 2:187,668,796...187,693,610
JBrowse link
G Cct8 chaperonin containing TCP1 subunit 8 ISO (MGI:MGI:5492256|PMID:23716698) RGD PMID:23716698 MGI:MGI:5492256 NCBI chr11:27,130,172...27,141,881
Ensembl chr11:27,130,172...27,141,881
JBrowse link
G Gsdmd gasdermin D ISO (MGI:MGI:5796057|PMID:27383986) RGD PMID:27383986 MGI:MGI:5796057 NCBI chr 7:116,889,147...116,894,134
Ensembl chr 7:116,889,572...116,894,134
JBrowse link
G P2rx7 purinergic receptor P2X 7 IDA
IEA
ISO
IMP
GO_REF:0000107
MGI:MGI:2386080|MGI:MGI:3042190 (MGI:MGI:2388453|PMID:12370338), (MGI:MGI:3589701|PMID:15937334), (MGI:MGI:3616954|PMID:16269410)
(PMID:25651887), (PMID:9038151)
Ensembl
RGD
PMID:9038151, PMID:12370338, PMID:15937334, PMID:16269410, PMID:25651887, PMID:15883745, PMID:15883745 GO_REF:0000107, MGI:MGI:2388453, MGI:MGI:3589701, MGI:MGI:3616954, RGD:1642715, RGD:1642715 NCBI chr12:39,353,613...39,396,042
Ensembl chr12:39,353,613...39,396,042
JBrowse link
G Pdzd11 PDZ domain containing 11 ISO (PMID:30463011)
(MGI:MGI:6316557|PMID:30463011)
RGD PMID:30463011 MGI:MGI:6316557 NCBI chr  X:70,458,601...70,461,635
Ensembl chr  X:70,458,603...70,461,635
JBrowse link
G Plekha7 pleckstrin homology domain containing A7 ISO
IBA
(PMID:30463011)
PMID:21873635
(MGI:MGI:6316557|PMID:30463011)
RGD PMID:30463011, PMID:21873635 MGI:MGI:6316557, RGD:13792537 NCBI chr 1:185,427,600...185,493,985
Ensembl chr 1:185,356,975...185,538,694
JBrowse link
G Tspan33 tetraspanin 33 ISO (PMID:30463011)
(MGI:MGI:6316557|PMID:30463011)
RGD PMID:30463011 MGI:MGI:6316557 NCBI chr 4:56,981,283...57,005,866
Ensembl chr 4:56,981,283...57,004,792
JBrowse link
nuclear pore complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahctf1 AT hook containing transcription factor 1 ISO (PMID:17098863) RGD PMID:17098863 NCBI chr13:98,023,528...98,079,138
Ensembl chr13:98,023,430...98,078,946
JBrowse link
G Ndc1 NDC1 transmembrane nucleoporin IEA
ISO
GO_REF:0000107
(PMID:16600873)
Ensembl
RGD
PMID:16600873 GO_REF:0000107 NCBI chr 5:126,976,636...127,022,941
Ensembl chr 5:126,976,456...127,022,939
JBrowse link
G Nup107 nucleoporin 107 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:15229283)
Ensembl
UniProt
RGD
PMID:15229283 GO_REF:0000024, GO_REF:0000107 NCBI chr 7:60,781,724...60,825,225
Ensembl chr 7:60,781,729...60,825,242
JBrowse link
G Nup153 nucleoporin 153 IEA
ISO
ISS
GO_REF:0000107
(PMID:12802065), (PMID:15229283)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:12802065, PMID:15229283 GO_REF:0000024, GO_REF:0000107 NCBI chr17:18,358,712...18,411,368
Ensembl chr17:18,358,712...18,411,368
JBrowse link
G Nup205 nucleoporin 205 ISO (PMID:15229283) RGD PMID:15229283 NCBI chr 4:62,703,779...62,773,931
Ensembl chr 4:62,703,779...62,773,923
JBrowse link
G Nup93 nucleoporin 93 ISS
ISO
GO_REF:0000024
(PMID:15229283), (PMID:26878725)
UniProt
RGD
PMID:15229283, PMID:26878725 GO_REF:0000024 NCBI chr19:11,159,769...11,263,980
Ensembl chr19:11,159,774...11,263,980
JBrowse link
G Nup98 nucleoporin 98 and 96 precursor ISO
ISS
(PMID:15229283)
GO_REF:0000024
RGD
UniProt
PMID:15229283 GO_REF:0000024 NCBI chr 1:167,213,866...167,308,851
Ensembl chr 1:167,213,866...167,308,851
JBrowse link
G Rtn4 reticulon 4 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:26906412)
Ensembl
UniProt
RGD
PMID:26906412 GO_REF:0000024, GO_REF:0000107 NCBI chr14:114,126,931...114,174,459
Ensembl chr14:114,126,943...114,174,458
JBrowse link
G Tmem170a transmembrane protein 170A ISO (PMID:26906412) RGD PMID:26906412 NCBI chr19:44,090,418...44,101,365
Ensembl chr19:44,088,612...44,101,365
JBrowse link
G Tpr translocated promoter region, nuclear basket protein NOT IMP
ISO
PMID:11839768
(PMID:12802065)
RGD PMID:12802065, PMID:11839768 RGD:8553300 NCBI chr13:67,611,685...67,672,833
Ensembl chr13:67,611,708...67,672,827
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    cellular process 18798
      cellular component organization or biogenesis 6789
        cellular component organization 6534
          cellular component assembly 2983
            protein-containing complex assembly 1608
              pore complex assembly 24
                nuclear pore complex assembly + 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.