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ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle transport along microtubule
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Accession:GO:0047496 term browser browse the term
Definition:The directed movement of a vesicle along a microtubule, mediated by motor proteins. This process begins with the attachment of a vesicle to a microtubule, and ends when the vesicle reaches its final destination.
Synonyms:exact_synonym: microtubule-based vesicle localization


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vesicle transport along microtubule term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISO (PMID:22261744) UniProtKB PMID:22261744
G DYNC1I1 dynein cytoplasmic 1 intermediate chain 1 ISO (PMID:24561039)
PMID:14985359
UniProtKB
HGNC
PMID:14985359, PMID:24561039 RGD:8553555 NCBI chr 7:87,724,604...88,050,624
Ensembl chr 7:101,344,053...101,648,607
JBrowse link
G HAP1 huntingtin associated protein 1 ISO (MGI:3046393|PMID:15242649) MGI PMID:15242649 MGI:3046393 NCBI chr17:15,578,658...15,596,313
Ensembl chr17:15,797,949...15,810,299
JBrowse link
G HTT huntingtin ISO (PMID:20515468)
(MGI:3046393|PMID:15242649)
UniProtKB
MGI
PMID:15242649, PMID:20515468 MGI:3046393 NCBI chr 4:3,215,081...3,388,587
Ensembl chr 4:3,128,718...3,283,730
JBrowse link
G KIF5B kinesin family member 5B ISO (PMID:28426968)
(MGI:3763812|PMID:17360972)
PMID:14985359
ARUK-UCL
MGI
HGNC
PMID:14985359, PMID:17360972, PMID:28426968 MGI:3763812, RGD:8553555 NCBI chr10:32,138,964...32,186,448
Ensembl chr10:32,731,150...32,778,242
JBrowse link
G MAP2K1 mitogen-activated protein kinase kinase 1 ISO positive regulation of bidirectional melanosome transport along microtubules RGD PMID:15753041 RGD:2293208 NCBI chr15:45,337,117...45,438,826
Ensembl chr15:63,613,961...63,714,161
JBrowse link
G NDE1 nudE neurodevelopment protein 1 ISO (MGI:3588829|PMID:16107726) MGI PMID:16107726 MGI:3588829 Ensembl chr16:15,948,881...16,027,986 JBrowse link
G NDEL1 nudE neurodevelopment protein 1 like 1 ISO (MGI:3588829|PMID:16107726) MGI PMID:16107726 MGI:3588829 NCBI chr17:43,186,255...43,218,436 JBrowse link
G PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 ISO (MGI:3588829|PMID:16107726) MGI PMID:16107726 MGI:3588829 NCBI chr17:2,584,349...2,676,928
Ensembl chr17:2,590,007...2,680,994
JBrowse link
G PRKCZ protein kinase C zeta ISO Slc10a1/Ntcp-containing early endosomes RGD PMID:16734659 RGD:1642664 NCBI chr 1:763,942...901,531
Ensembl chr 1:1,920,219...2,045,855
JBrowse link
G RAB1A RAB1A, member RAS oncogene family ISO PMID:21303926
(PMID:21303926)
UniProt
UniProtKB
PMID:21303926 RGD:8554665 NCBI chr2A:65,149,922...65,193,305
Ensembl chr2A:66,274,809...66,318,290
JBrowse link
G RASGRP1 RAS guanyl releasing protein 1 ISO (MGI:3758152|PMID:17190838) MGI PMID:17190838 MGI:3758152 NCBI chr15:17,417,684...17,494,333
Ensembl chr15:35,675,348...35,750,315
JBrowse link
G VAMP7 vesicle associated membrane protein 7 ISO PMID:22705394 UniProt PMID:22705394 RGD:10047362 NCBI chr  X:145,362,432...145,425,097
Ensembl chr  X:155,257,185...155,320,215
JBrowse link
anterograde neuronal dense core vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIF1A kinesin family member 1A ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr2B:127,969,494...128,078,282
Ensembl chr2B:246,778,679...246,860,326
JBrowse link
G KIF1B kinesin family member 1B ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 1:8,969,910...9,141,964
Ensembl chr 1:10,198,997...10,364,577
JBrowse link
G KIF1C kinesin family member 1C ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr17:5,046,488...5,073,220
Ensembl chr17:5,035,014...5,061,957
JBrowse link
G SYBU syntabulin ISO RGD PMID:17611281 RGD:13217407 NCBI chr 8:106,223,046...106,340,418
Ensembl chr 8:108,368,117...108,483,927
JBrowse link
anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP3B1 adaptor related protein complex 3 subunit beta 1 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr 5:37,015,518...37,305,769
Ensembl chr 5:37,503,162...37,840,205
JBrowse link
G AP3B2 adaptor related protein complex 3 subunit beta 2 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr15:62,888,359...62,938,758
Ensembl chr15:80,557,967...80,607,475
JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr19:1,110,419...1,161,826
Ensembl chr19:2,085,540...2,137,593
JBrowse link
G AP3M1 adaptor related protein complex 3 subunit mu 1 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr10:70,643,520...70,672,821
Ensembl chr10:73,312,906...73,342,382
JBrowse link
G AP3M2 adaptor related protein complex 3 subunit mu 2 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr 8:41,397,123...41,415,379
Ensembl chr 8:38,842,811...38,861,030
JBrowse link
G AP3S1 adaptor related protein complex 3 subunit sigma 1 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr 5:111,195,900...111,268,129
Ensembl chr 5:116,992,049...117,063,727
JBrowse link
G AP3S2 adaptor related protein complex 3 subunit sigma 2 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr15:68,524,982...68,583,917 JBrowse link
G BLOC1S1 biogenesis of lysosomal organelles complex 1 subunit 1 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr12:33,191,882...33,195,566
Ensembl chr12:33,911,309...33,920,506
JBrowse link
G BLOC1S2 biogenesis of lysosomal organelles complex 1 subunit 2 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr10:96,878,280...96,887,830
Ensembl chr10:100,358,095...100,368,640
JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr19:42,100,227...42,128,636 JBrowse link
G BLOC1S4 biogenesis of lysosomal organelles complex 1 subunit 4 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 Ensembl chr 4:6,787,943...6,788,596 JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr 6:7,852,340...7,902,880
Ensembl chr 6:8,133,721...8,184,194
JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr15:24,469,225...24,553,163
Ensembl chr15:42,862,112...42,882,316
JBrowse link
G DTNBP1 dystrobrevin binding protein 1 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr 6:15,377,263...15,523,317
Ensembl chr 6:15,741,698...15,887,256
JBrowse link
G MADD MAP kinase activating death domain ISO (MGI:6189386|PMID:18849981) SynGO PMID:18849981 MGI:6189386 NCBI chr11:47,216,006...47,276,422
Ensembl chr11:47,773,733...47,828,360
JBrowse link
G SNAPIN SNAP associated protein ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr 1:129,014,668...129,018,428
Ensembl chr 1:132,644,320...132,647,095
JBrowse link
G TRIM46 tripartite motif containing 46 ISO (MGI:5708763|PMID:26671463) MGI PMID:26671463 MGI:5708763 NCBI chr 1:130,521,472...130,532,636
Ensembl chr 1:134,129,984...134,142,362
JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNIH2 cornichon family AMPA receptor auxiliary protein 2 ISO PMID:24094107 UniProt PMID:24094107 RGD:10400859 NCBI chr11:61,643,633...61,649,646
Ensembl chr11:64,969,447...64,975,156
JBrowse link
plus-end-directed vesicle transport along microtubule term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FYCO1 FYVE and coiled-coil domain autophagy adaptor 1 ISO (PMID:20100911) UniProtKB PMID:20100911 NCBI chr 3:45,825,670...45,903,595
Ensembl chr 3:46,932,148...47,009,676
JBrowse link
G KIF13A kinesin family member 13A ISO (MGI:5142383|PMID:11106728) UniProt PMID:11106728 MGI:5142383 NCBI chr 6:17,593,535...17,836,915
Ensembl chr 6:17,966,994...18,190,286
JBrowse link
G KIF5B kinesin family member 5B ISO (MGI:3763812|PMID:17360972) MGI PMID:17360972 MGI:3763812 NCBI chr10:32,138,964...32,186,448
Ensembl chr10:32,731,150...32,778,242
JBrowse link
positive regulation of anterograde dense core granule transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAP2 microtubule associated protein 2 ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr2B:96,681,268...96,991,650
Ensembl chr2B:215,314,857...215,391,728
JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chr  X:143,571,864...143,647,192
Ensembl chr  X:153,465,204...153,527,854
JBrowse link
G TRIM46 tripartite motif containing 46 ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 1:130,521,472...130,532,636
Ensembl chr 1:134,129,984...134,142,362
JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAP2 microtubule associated protein 2 ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr2B:96,681,268...96,991,650
Ensembl chr2B:215,314,857...215,391,728
JBrowse link
positive regulation of retrograde dense core granule transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chr  X:143,571,864...143,647,192
Ensembl chr  X:153,465,204...153,527,854
JBrowse link
positive regulation of vesicle transport along microtubule term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STK11 serine/threonine kinase 11 ISO (PMID:24643070)
(MGI:5604606|PMID:24643070)
UniProt PMID:24643070 MGI:5604606, RGD:30309925 Ensembl chr19:1,188,537...1,210,677 JBrowse link
retrograde neuronal dense core vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIF1A kinesin family member 1A ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr2B:127,969,494...128,078,282
Ensembl chr2B:246,778,679...246,860,326
JBrowse link
G KIF1B kinesin family member 1B ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 1:8,969,910...9,141,964
Ensembl chr 1:10,198,997...10,364,577
JBrowse link
G KIF1C kinesin family member 1C ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr17:5,046,488...5,073,220
Ensembl chr17:5,035,014...5,061,957
JBrowse link
G KIF5A kinesin family member 5A ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr12:31,340,201...31,376,849
Ensembl chr12:31,599,376...31,635,327
JBrowse link
G KIF5B kinesin family member 5B ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr10:32,138,964...32,186,448
Ensembl chr10:32,731,150...32,778,242
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12566
    localization 4923
      establishment of localization 3510
        establishment of organelle localization 341
          organelle transport along microtubule 74
            vesicle transport along microtubule 41
              anterograde neuronal dense core vesicle transport + 7
              minus-end-directed vesicle transport along microtubule 0
              negative regulation of vesicle transport along microtubule + 1
              plus-end-directed vesicle transport along microtubule + 3
              positive regulation of vesicle transport along microtubule + 4
              regulation of vesicle transport along microtubule + 5
              retrograde neuronal dense core vesicle transport + 6
              synaptic vesicle transport along microtubule + 19
Path 2
Term Annotations click to browse term
  biological_process 12566
    cellular process 11671
      cellular localization 2365
        establishment of localization in cell 1681
          intracellular transport 1072
            cytoskeleton-dependent intracellular transport 148
              transport along microtubule 138
                organelle transport along microtubule 74
                  vesicle transport along microtubule 41
                    anterograde neuronal dense core vesicle transport + 7
                    minus-end-directed vesicle transport along microtubule 0
                    negative regulation of vesicle transport along microtubule + 1
                    plus-end-directed vesicle transport along microtubule + 3
                    positive regulation of vesicle transport along microtubule + 4
                    regulation of vesicle transport along microtubule + 5
                    retrograde neuronal dense core vesicle transport + 6
                    synaptic vesicle transport along microtubule + 19
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.