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ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle transport along microtubule
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Accession:GO:0047496 term browser browse the term
Definition:The directed movement of a vesicle along a microtubule, mediated by motor proteins. This process begins with the attachment of a vesicle to a microtubule, and ends when the vesicle reaches its final destination.
Synonyms:exact_synonym: microtubule-based vesicle localization


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vesicle transport along microtubule term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISO (PMID:22261744) UniProtKB PMID:22261744 NCBI chrNW_004955493:6,696,520...6,707,849 JBrowse link
G Dync1i1 dynein cytoplasmic 1 intermediate chain 1 ISO (PMID:24561039)
PMID:14985359
UniProtKB
HGNC
PMID:14985359, PMID:24561039 RGD:8553555 NCBI chrNW_004955432:12,383,582...12,657,491
Ensembl chrNW_004955432:12,353,993...12,658,157
JBrowse link
G Htt huntingtin ISO (PMID:20515468)
(MGI:3046393|PMID:15242649)
UniProtKB
MGI
PMID:15242649, PMID:20515468 MGI:3046393 NCBI chrNW_004955514:1,906,189...2,042,357
Ensembl chrNW_004955514:1,906,502...2,038,889
JBrowse link
G Kif5b kinesin family member 5B ISO PMID:14985359
(MGI:3763812|PMID:17360972)
(PMID:28426968)
HGNC
MGI
ARUK-UCL
PMID:14985359, PMID:17360972, PMID:28426968 MGI:3763812, RGD:8553555 NCBI chrNW_004955429:23,632,246...23,678,797
Ensembl chrNW_004955429:23,631,282...23,678,562
JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 ISO positive regulation of bidirectional melanosome transport along microtubules RGD PMID:15753041 RGD:2293208 NCBI chrNW_004955450:9,181,851...9,205,277
Ensembl chrNW_004955450:9,181,851...9,239,648
JBrowse link
G Nde1 nudE neurodevelopment protein 1 ISO (MGI:3588829|PMID:16107726) MGI PMID:16107726 MGI:3588829 NCBI chrNW_004955442:495,704...530,296
Ensembl chrNW_004955442:495,704...542,976
JBrowse link
G Ndel1 nudE neurodevelopment protein 1 like 1 ISO (MGI:3588829|PMID:16107726) MGI PMID:16107726 MGI:3588829 NCBI chrNW_004955467:8,432,806...8,486,563
Ensembl chrNW_004955467:8,432,806...8,468,155
JBrowse link
G Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 ISO (MGI:3588829|PMID:16107726) MGI PMID:16107726 MGI:3588829 NCBI chrNW_004955481:608,897...686,454
Ensembl chrNW_004955481:608,897...686,452
JBrowse link
G Prkcz protein kinase C zeta ISO Slc10a1/Ntcp-containing early endosomes RGD PMID:16734659 RGD:1642664 NCBI chrNW_004955486:8,947,579...9,021,702
Ensembl chrNW_004955486:8,947,579...9,021,702
JBrowse link
G Rab1a RAB1A, member RAS oncogene family ISO PMID:21303926
(PMID:21303926)
UniProt
UniProtKB
PMID:21303926 RGD:8554665 NCBI chrNW_004955424:19,393,589...19,421,373
Ensembl chrNW_004955424:19,393,589...19,421,373
JBrowse link
G Rasgrp1 RAS guanyl releasing protein 1 ISO (MGI:3758152|PMID:17190838) MGI PMID:17190838 MGI:3758152 NCBI chrNW_004955416:5,494,030...5,561,608
Ensembl chrNW_004955416:5,494,030...5,561,614
JBrowse link
G Vamp7 vesicle associated membrane protein 7 ISO PMID:22705394 UniProt PMID:22705394 RGD:10047362 NCBI chrNW_004955594:20,496...72,648
Ensembl chrNW_004955594:18,727...72,654
JBrowse link
anterograde neuronal dense core vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif1a kinesin family member 1A ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004955542:756,834...832,805
Ensembl chrNW_004955542:756,835...832,889
JBrowse link
G Kif1b kinesin family member 1B ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004955486:3,366,791...3,503,845
Ensembl chrNW_004955486:3,370,596...3,489,052
JBrowse link
G Kif1c kinesin family member 1C ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004955467:10,399,768...10,423,249
Ensembl chrNW_004955467:10,399,768...10,422,712
JBrowse link
G Sybu syntabulin ISO RGD PMID:17611281 RGD:13217407 NCBI chrNW_004955417:16,971,394...17,036,925
Ensembl chrNW_004955417:16,971,394...17,036,940
JBrowse link
anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004955425:22,792,616...23,051,509
Ensembl chrNW_004955425:22,792,616...23,051,737
JBrowse link
G Ap3b2 adaptor related protein complex 3 subunit beta 2 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004955416:13,927,655...13,956,589
Ensembl chrNW_004955416:13,927,545...13,957,207
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004955495:5,972,177...6,012,525
Ensembl chrNW_004955495:5,972,433...6,012,433
JBrowse link
G Ap3m1 adaptor related protein complex 3 subunit mu 1 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004955437:17,786,419...17,810,678
Ensembl chrNW_004955437:17,786,419...17,810,678
JBrowse link
G Ap3m2 adaptor related protein complex 3 subunit mu 2 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004955536:767,470...900,268
Ensembl chrNW_004955536:767,306...812,204
JBrowse link
G Ap3s1 adaptor related protein complex 3 subunit sigma 1 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004955408:35,621,062...35,680,620
Ensembl chrNW_004955408:35,621,062...35,680,683
JBrowse link
G Bloc1s1 biogenesis of lysosomal organelles complex 1 subunit 1 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004955458:3,352,442...3,356,224
Ensembl chrNW_004955458:3,352,012...3,365,080
JBrowse link
G Bloc1s2 biogenesis of lysosomal organelles complex 1 subunit 2 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004955507:6,138,511...6,144,823
Ensembl chrNW_004955507:6,138,071...6,144,823
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004955555:2,183,752...2,186,154
Ensembl chrNW_004955555:2,184,490...2,185,138
JBrowse link
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004955514:3,698,644...3,699,227 JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004955465:5,910,095...5,943,996 JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004955409:7,902,125...7,913,966
Ensembl chrNW_004955409:7,899,601...7,913,966
JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004955590:276,143...382,812
Ensembl chrNW_004955590:281,704...386,189
JBrowse link
G Madd MAP kinase activating death domain ISO (MGI:6189386|PMID:18849981) SynGO PMID:18849981 MGI:6189386 NCBI chrNW_004955422:902,969...940,201
Ensembl chrNW_004955422:902,969...940,201
JBrowse link
G Snapin SNAP associated protein ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004955545:306,546...308,229
Ensembl chrNW_004955545:306,546...308,229
JBrowse link
G Trim46 tripartite motif containing 46 ISO (MGI:5708763|PMID:26671463) MGI PMID:26671463 MGI:5708763 NCBI chrNW_004955545:1,646,244...1,656,825
Ensembl chrNW_004955545:1,646,244...1,656,825
JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnih2 cornichon family AMPA receptor auxiliary protein 2 ISO PMID:24094107 UniProt PMID:24094107 RGD:10400859 NCBI chrNW_004955422:19,033,201...19,035,135
Ensembl chrNW_004955422:19,033,201...19,035,138
JBrowse link
plus-end-directed vesicle transport along microtubule term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 ISO (PMID:20100911) UniProtKB PMID:20100911 NCBI chrNW_004955420:26,019,621...26,076,846
Ensembl chrNW_004955420:26,019,514...26,074,492
JBrowse link
G Kif13a kinesin family member 13A ISO (MGI:5142383|PMID:11106728) UniProt PMID:11106728 MGI:5142383 NCBI chrNW_004955483:8,191,514...8,366,645
Ensembl chrNW_004955483:8,191,514...8,366,645
JBrowse link
G Kif5b kinesin family member 5B ISO (MGI:3763812|PMID:17360972) MGI PMID:17360972 MGI:3763812 NCBI chrNW_004955429:23,632,246...23,678,797
Ensembl chrNW_004955429:23,631,282...23,678,562
JBrowse link
positive regulation of anterograde dense core granule transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Map2 microtubule associated protein 2 ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004955457:5,678,826...5,816,114
Ensembl chrNW_004955457:5,678,436...5,875,024
JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chrNW_004955580:674,014...737,586
Ensembl chrNW_004955580:679,109...735,288
JBrowse link
G Trim46 tripartite motif containing 46 ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004955545:1,646,244...1,656,825
Ensembl chrNW_004955545:1,646,244...1,656,825
JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Map2 microtubule associated protein 2 ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004955457:5,678,826...5,816,114
Ensembl chrNW_004955457:5,678,436...5,875,024
JBrowse link
positive regulation of retrograde dense core granule transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chrNW_004955580:674,014...737,586
Ensembl chrNW_004955580:679,109...735,288
JBrowse link
positive regulation of vesicle transport along microtubule term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stk11 serine/threonine kinase 11 ISO (PMID:24643070)
(MGI:5604606|PMID:24643070)
UniProt PMID:24643070 MGI:5604606, RGD:30309925 NCBI chrNW_004955495:6,678,195...6,699,408
Ensembl chrNW_004955495:6,678,195...6,699,058
JBrowse link
retrograde neuronal dense core vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif1a kinesin family member 1A ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004955542:756,834...832,805
Ensembl chrNW_004955542:756,835...832,889
JBrowse link
G Kif1b kinesin family member 1B ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004955486:3,366,791...3,503,845
Ensembl chrNW_004955486:3,370,596...3,489,052
JBrowse link
G Kif1c kinesin family member 1C ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004955467:10,399,768...10,423,249
Ensembl chrNW_004955467:10,399,768...10,422,712
JBrowse link
G Kif5a kinesin family member 5A ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004955458:5,264,274...5,310,962
Ensembl chrNW_004955458:5,287,111...5,310,962
JBrowse link
G Kif5b kinesin family member 5B ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004955429:23,632,246...23,678,797
Ensembl chrNW_004955429:23,631,282...23,678,562
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11892
    localization 4745
      establishment of localization 3390
        establishment of organelle localization 328
          organelle transport along microtubule 72
            vesicle transport along microtubule 39
              anterograde neuronal dense core vesicle transport + 7
              minus-end-directed vesicle transport along microtubule 0
              negative regulation of vesicle transport along microtubule + 1
              plus-end-directed vesicle transport along microtubule + 3
              positive regulation of vesicle transport along microtubule + 4
              regulation of vesicle transport along microtubule + 5
              retrograde neuronal dense core vesicle transport + 6
              synaptic vesicle transport along microtubule + 18
Path 2
Term Annotations click to browse term
  biological_process 11892
    cellular process 11098
      cellular localization 2321
        establishment of localization in cell 1644
          intracellular transport 1054
            cytoskeleton-dependent intracellular transport 146
              transport along microtubule 137
                organelle transport along microtubule 72
                  vesicle transport along microtubule 39
                    anterograde neuronal dense core vesicle transport + 7
                    minus-end-directed vesicle transport along microtubule 0
                    negative regulation of vesicle transport along microtubule + 1
                    plus-end-directed vesicle transport along microtubule + 3
                    positive regulation of vesicle transport along microtubule + 4
                    regulation of vesicle transport along microtubule + 5
                    retrograde neuronal dense core vesicle transport + 6
                    synaptic vesicle transport along microtubule + 18
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.