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ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle transport along microtubule
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Accession:GO:0047496 term browser browse the term
Definition:The directed movement of a vesicle along a microtubule, mediated by motor proteins. This process begins with the attachment of a vesicle to a microtubule, and ends when the vesicle reaches its final destination.
Synonyms:exact_synonym: microtubule-based vesicle localization


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vesicle transport along microtubule term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BICDL1 BICD family like cargo adaptor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:15,959,077...16,060,492
Ensembl chr26:15,959,071...16,059,226
JBrowse link
G BICDL2 BICD family like cargo adaptor 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:38,151,942...38,161,462
Ensembl chr 6:38,152,952...38,161,428
JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISS UniProtKB GO_REF:0000024 NCBI chr 6:18,252,543...18,266,033
Ensembl chr 6:18,254,139...18,266,033
JBrowse link
G DYNC1I1 dynein cytoplasmic 1 intermediate chain 1 IEA Ensembl GO_REF:0000107 NCBI chr14:20,967,936...21,279,044
Ensembl chr14:20,968,011...21,278,363
JBrowse link
G FBXW11 F-box and WD repeat domain containing 11 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:40,238,695...40,363,445
Ensembl chr 4:40,238,737...40,361,125
JBrowse link
G HAP1 huntingtin associated protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:21,065,770...21,074,462
Ensembl chr 9:21,065,846...21,072,991
JBrowse link
G HTT huntingtin IEA Ensembl GO_REF:0000107 NCBI chr 3:61,076,934...61,221,462
Ensembl chr 3:61,079,904...61,330,290
JBrowse link
G KIF5B kinesin family member 5B ISO PMID:14985359
(MGI:3763812|PMID:17360972)
(PMID:28426968)
HGNC
MGI
ARUK-UCL
PMID:14985359, PMID:17360972, PMID:28426968 MGI:3763812, RGD:8553555 NCBI chr 2:14,835,906...14,880,896
Ensembl chr 2:14,835,901...14,878,251
JBrowse link
G MAP2K1 mitogen-activated protein kinase kinase 1 ISO positive regulation of bidirectional melanosome transport along microtubules RGD PMID:15753041 RGD:2293208 NCBI chr30:30,683,192...30,760,479
Ensembl chr30:30,683,107...30,760,479
JBrowse link
G NDE1 nudE neurodevelopment protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:28,143,244...28,186,069
Ensembl chr 6:28,143,244...28,186,051
JBrowse link
G NDEL1 nudE neurodevelopment protein 1 like 1 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 5:33,187,614...33,244,483
Ensembl chr 5:33,204,452...33,266,052
JBrowse link
G PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 9:46,648,057...46,731,259
Ensembl chr 9:46,648,052...46,771,400
JBrowse link
G PRKCZ protein kinase C zeta ISO Slc10a1/Ntcp-containing early endosomes RGD PMID:16734659 RGD:1642664 NCBI chr 5:57,012,020...57,113,346
Ensembl chr 5:57,012,070...57,112,664
JBrowse link
G RAB1A RAB1A, member RAS oncogene family ISS UniProtKB GO_REF:0000024 NCBI chr10:64,564,351...64,590,654
Ensembl chr10:64,564,298...64,590,705
JBrowse link
G RASGRP1 RAS guanyl releasing protein 1 ISO (MGI:3758152|PMID:17190838) MGI PMID:17190838 MGI:3758152 NCBI chr30:5,840,901...5,914,804
Ensembl chr30:5,841,738...5,914,810
JBrowse link
G TRAK1 trafficking kinesin protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr23:11,221,008...11,383,242
Ensembl chr23:11,266,216...11,381,177
JBrowse link
G TRAK2 trafficking kinesin protein 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr37:10,457,985...10,521,432
Ensembl chr37:10,461,104...10,497,820
JBrowse link
G VAMP7 vesicle associated membrane protein 7 ISO PMID:22705394 UniProt PMID:22705394 RGD:10047362 NCBI chr  X:123,717,524...123,783,781
Ensembl chr  X:123,717,446...123,783,014
JBrowse link
anterograde neuronal dense core vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIF1A kinesin family member 1A ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr25:50,855,703...50,945,014
Ensembl chr25:50,858,698...50,944,964
JBrowse link
G KIF1B kinesin family member 1B ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 5:63,367,294...63,516,388
Ensembl chr 5:63,376,820...63,513,476
JBrowse link
G KIF1C kinesin family member 1C ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 5:31,613,335...31,635,313
Ensembl chr 5:31,613,398...31,633,736
JBrowse link
G SYBU syntabulin ISO RGD PMID:17611281 RGD:13217407 NCBI chr13:10,110,183...10,179,514
Ensembl chr13:10,111,091...10,180,056
JBrowse link
anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP3B1 adaptor related protein complex 3 subunit beta 1 ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr 3:28,481,974...28,748,095
Ensembl chr 3:28,481,038...28,751,258
JBrowse link
G AP3B2 adaptor related protein complex 3 subunit beta 2 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 3:54,509,753...54,539,520
Ensembl chr 3:54,508,627...54,539,505
JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:56,893,479...56,932,460
Ensembl chr20:56,893,535...56,931,830
JBrowse link
G AP3M1 adaptor related protein complex 3 subunit mu 1 IEA Ensembl GO_REF:0000107 NCBI chr 4:24,521,655...24,540,232
Ensembl chr 4:24,516,758...24,540,232
JBrowse link
G AP3M2 adaptor related protein complex 3 subunit mu 2 IEA Ensembl GO_REF:0000107 NCBI chr16:23,500,988...23,518,193
Ensembl chr16:23,454,325...23,518,193
JBrowse link
G AP3S1 adaptor related protein complex 3 subunit sigma 1 IEA Ensembl GO_REF:0000107 NCBI chr11:5,543,140...5,611,322
Ensembl chr11:5,543,222...5,610,930
JBrowse link
G AP3S2 adaptor related protein complex 3 subunit sigma 2 IEA Ensembl GO_REF:0000107 NCBI chr 3:52,807,462...52,865,290
Ensembl chr 3:52,807,462...52,865,245
JBrowse link
G BLOC1S1 biogenesis of lysosomal organelles complex 1 subunit 1 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr10:116,993...120,244 JBrowse link
G BLOC1S2 biogenesis of lysosomal organelles complex 1 subunit 2 IEA Ensembl GO_REF:0000107 NCBI chr28:13,040,016...13,044,364
Ensembl chr28:13,040,573...13,044,323
JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 IEA Ensembl GO_REF:0000107 NCBI chr 1:110,325,351...110,328,226
Ensembl chr 1:110,326,843...110,327,442
JBrowse link
G BLOC1S4 biogenesis of lysosomal organelles complex 1 subunit 4 IEA Ensembl GO_REF:0000107 NCBI chr 3:58,822,405...58,823,770
Ensembl chr 3:58,822,482...58,823,138
JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 IEA Ensembl GO_REF:0000107 NCBI chr35:7,860,336...7,998,461
Ensembl chr35:7,955,923...7,998,505
JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 IEA Ensembl GO_REF:0000107 NCBI chr30:11,861,119...11,949,451
Ensembl chr30:11,811,339...11,937,353
JBrowse link
G DTNBP1 dystrobrevin binding protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:14,738,025...14,862,609
Ensembl chr35:14,738,029...14,864,169
JBrowse link
G MADD MAP kinase activating death domain ISO (MGI:6189386|PMID:18849981) SynGO PMID:18849981 MGI:6189386 NCBI chr18:42,290,226...42,332,237
Ensembl chr18:42,290,754...42,328,586
JBrowse link
G SNAPIN SNAP associated protein ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr 7:43,410,554...43,411,929
Ensembl chr 7:43,410,998...43,412,323
JBrowse link
G TRIM46 tripartite motif containing 46 IEA Ensembl GO_REF:0000107 NCBI chr 7:42,345,506...42,354,667
Ensembl chr 7:42,345,523...42,354,557
JBrowse link
minus-end-directed vesicle transport along microtubule term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DYNC1H1 dynein cytoplasmic 1 heavy chain 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:69,997,021...70,064,886
Ensembl chr 8:69,997,145...70,064,825
JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNIH2 cornichon family AMPA receptor auxiliary protein 2 ISO PMID:24094107 UniProt PMID:24094107 RGD:10400859 NCBI chr18:51,020,263...51,026,280
Ensembl chr18:51,021,116...51,026,273
JBrowse link
plus-end-directed vesicle transport along microtubule term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FYCO1 FYVE and coiled-coil domain autophagy adaptor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:42,520,241...42,593,886
Ensembl chr20:42,525,435...42,590,243
JBrowse link
G KIF13A kinesin family member 13A IEA InterPro GO_REF:0000002 NCBI chr35:16,621,581...16,748,500
Ensembl chr35:16,598,425...16,748,485
JBrowse link
G KIF13B kinesin family member 13B IEA InterPro GO_REF:0000002 NCBI chr25:28,284,463...28,484,969
Ensembl chr25:28,284,145...28,487,171
JBrowse link
G KIF23 kinesin family member 23 IEA InterPro GO_REF:0000002 NCBI chr30:33,313,029...33,337,663
Ensembl chr30:33,302,709...33,337,422
JBrowse link
G KIF5B kinesin family member 5B IEA Ensembl GO_REF:0000107 NCBI chr 2:14,835,906...14,880,896
Ensembl chr 2:14,835,901...14,878,251
JBrowse link
positive regulation of anterograde dense core granule transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAP2 microtubule associated protein 2 ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr37:17,316,899...17,611,360
Ensembl chr37:17,466,678...17,607,803
JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994
JBrowse link
G TRIM46 tripartite motif containing 46 ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 7:42,345,506...42,354,667
Ensembl chr 7:42,345,523...42,354,557
JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BORCS5 BLOC-1 related complex subunit 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:33,839,345...33,949,056
Ensembl chr27:33,837,318...33,934,896
JBrowse link
G MAP2 microtubule associated protein 2 ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr37:17,316,899...17,611,360
Ensembl chr37:17,466,678...17,607,803
JBrowse link
positive regulation of retrograde dense core granule transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994
JBrowse link
positive regulation of vesicle transport along microtubule term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STK11 serine/threonine kinase 11 IEA Ensembl GO_REF:0000107 NCBI chr20:57,558,966...57,579,163
Ensembl chr20:57,559,424...57,579,118
JBrowse link
retrograde neuronal dense core vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIF1A kinesin family member 1A ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr25:50,855,703...50,945,014
Ensembl chr25:50,858,698...50,944,964
JBrowse link
G KIF1B kinesin family member 1B ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 5:63,367,294...63,516,388
Ensembl chr 5:63,376,820...63,513,476
JBrowse link
G KIF1C kinesin family member 1C ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 5:31,613,335...31,635,313
Ensembl chr 5:31,613,398...31,633,736
JBrowse link
G KIF5A kinesin family member 5A ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr10:1,637,007...1,666,790
Ensembl chr10:1,636,932...1,664,767
JBrowse link
G KIF5B kinesin family member 5B ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 2:14,835,906...14,880,896
Ensembl chr 2:14,835,901...14,878,251
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16186
    localization 5960
      establishment of localization 4453
        establishment of organelle localization 405
          organelle transport along microtubule 87
            vesicle transport along microtubule 50
              anterograde neuronal dense core vesicle transport + 7
              minus-end-directed vesicle transport along microtubule 1
              negative regulation of vesicle transport along microtubule + 1
              plus-end-directed vesicle transport along microtubule + 5
              positive regulation of vesicle transport along microtubule + 5
              regulation of vesicle transport along microtubule + 6
              retrograde neuronal dense core vesicle transport + 6
              synaptic vesicle transport along microtubule + 20
Path 2
Term Annotations click to browse term
  biological_process 16186
    cellular process 15465
      cellular localization 2814
        establishment of localization in cell 2077
          intracellular transport 1444
            cytoskeleton-dependent intracellular transport 195
              transport along microtubule 165
                organelle transport along microtubule 87
                  vesicle transport along microtubule 50
                    anterograde neuronal dense core vesicle transport + 7
                    minus-end-directed vesicle transport along microtubule 1
                    negative regulation of vesicle transport along microtubule + 1
                    plus-end-directed vesicle transport along microtubule + 5
                    positive regulation of vesicle transport along microtubule + 5
                    regulation of vesicle transport along microtubule + 6
                    retrograde neuronal dense core vesicle transport + 6
                    synaptic vesicle transport along microtubule + 20
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.