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ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle transport along microtubule
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Accession:GO:0047496 term browser browse the term
Definition:The directed movement of a vesicle along a microtubule, mediated by motor proteins. This process begins with the attachment of a vesicle to a microtubule, and ends when the vesicle reaches its final destination.
Synonyms:exact_synonym: microtubule-based vesicle localization


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vesicle transport along microtubule term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISO (PMID:22261744) UniProtKB PMID:22261744 NCBI chrNW_004936501:11,955,334...11,967,338 JBrowse link
G Dync1i1 dynein cytoplasmic 1 intermediate chain 1 ISO (PMID:24561039)
PMID:14985359
UniProtKB
HGNC
PMID:14985359, PMID:24561039 RGD:8553555 NCBI chrNW_004936585:4,232,428...4,496,878 JBrowse link
G Hap1 huntingtin associated protein 1 ISO (MGI:3046393|PMID:15242649) MGI PMID:15242649 MGI:3046393 NCBI chrNW_004936490:16,645,116...16,652,310 JBrowse link
G Htt huntingtin ISO (PMID:20515468)
(MGI:3046393|PMID:15242649)
UniProtKB
MGI
PMID:15242649, PMID:20515468 MGI:3046393 NCBI chrNW_004936477:20,443,101...20,577,167 JBrowse link
G Kif5b kinesin family member 5B ISO PMID:14985359
(MGI:3763812|PMID:17360972)
(PMID:28426968)
HGNC
MGI
ARUK-UCL
PMID:14985359, PMID:17360972, PMID:28426968 MGI:3763812, RGD:8553555 NCBI chrNW_004936574:780,074...823,858 JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 ISO positive regulation of bidirectional melanosome transport along microtubules RGD PMID:15753041 RGD:2293208 NCBI chrNW_004936471:26,589,251...26,628,302 JBrowse link
G Nde1 nudE neurodevelopment protein 1 ISO (MGI:3588829|PMID:16107726) MGI PMID:16107726 MGI:3588829 NCBI chrNW_004936501:3,193,962...3,234,640 JBrowse link
G Ndel1 nudE neurodevelopment protein 1 like 1 ISO (MGI:3588829|PMID:16107726) MGI PMID:16107726 MGI:3588829 NCBI chrNW_004936595:1,656,956...1,692,775 JBrowse link
G Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 ISO (MGI:3588829|PMID:16107726) MGI PMID:16107726 MGI:3588829 NCBI chrNW_004936538:8,612,142...8,693,698 JBrowse link
G Prkcz protein kinase C zeta ISO Slc10a1/Ntcp-containing early endosomes RGD PMID:16734659 RGD:1642664 NCBI chrNW_004936737:1,303,502...1,383,135 JBrowse link
G Rab1a RAB1A, member RAS oncogene family ISO (PMID:21303926) UniProtKB
UniProt
PMID:21303926 RGD:8554665 NCBI chrNW_004936491:9,858,645...9,891,674 JBrowse link
G Rasgrp1 RAS guanyl releasing protein 1 ISO (MGI:3758152|PMID:17190838) MGI PMID:17190838 MGI:3758152 NCBI chrNW_004936471:2,152,231...2,222,260 JBrowse link
G Vamp7 vesicle associated membrane protein 7 ISO PMID:22705394 UniProt PMID:22705394 RGD:10047362 NCBI chrNW_004936958:345,055...393,384 JBrowse link
anterograde neuronal dense core vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif1a kinesin family member 1A ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936745:911,651...976,878 JBrowse link
G Kif1b kinesin family member 1B ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936623:4,091,093...4,222,510 JBrowse link
G Kif1c kinesin family member 1C ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936677:2,696,385...2,720,959 JBrowse link
G Sybu syntabulin ISO RGD PMID:17611281 RGD:13217407 NCBI chrNW_004936470:35,332,243...35,439,095 JBrowse link
anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004936549:5,964,240...6,205,245 JBrowse link
G Ap3b2 adaptor related protein complex 3 subunit beta 2 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004936483:17,301,969...17,336,962 JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004936588:1,223,646...1,262,577 JBrowse link
G Ap3m1 adaptor related protein complex 3 subunit mu 1 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004936521:5,023,896...5,050,822 JBrowse link
G Ap3m2 adaptor related protein complex 3 subunit mu 2 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004936785:503,615...525,361 JBrowse link
G Ap3s1 adaptor related protein complex 3 subunit sigma 1 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004936742:1,007,684...1,088,272 JBrowse link
G Bloc1s1 biogenesis of lysosomal organelles complex 1 subunit 1 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004936646:186,422...190,870 JBrowse link
G Bloc1s2 biogenesis of lysosomal organelles complex 1 subunit 2 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004939661:2,128...6,384 JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004936706:1,702,154...1,704,366 JBrowse link
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004936477:18,618,330...18,619,512 JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004936534:4,550,592...4,584,482 JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004936471:8,209,091...8,226,249 JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004936552:1,787,687...1,926,516 JBrowse link
G Madd MAP kinase activating death domain ISO (MGI:6189386|PMID:18849981) SynGO PMID:18849981 MGI:6189386 NCBI chrNW_004936562:1,891,120...1,936,559 JBrowse link
G Snapin SNAP associated protein ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004936580:3,449,585...3,464,709 JBrowse link
G Trim46 tripartite motif containing 46 ISO (MGI:5708763|PMID:26671463) MGI PMID:26671463 MGI:5708763 NCBI chrNW_004936580:4,678,855...4,690,222 JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnih2 cornichon family AMPA receptor auxiliary protein 2 ISO PMID:24094107 UniProt PMID:24094107 RGD:10400859 NCBI chrNW_004936599:3,310,873...3,316,575 JBrowse link
plus-end-directed vesicle transport along microtubule term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 ISO (PMID:20100911) UniProtKB PMID:20100911 NCBI chrNW_004936596:3,938...81,226 JBrowse link
G Kif13a kinesin family member 13A ISO (MGI:5142383|PMID:11106728) UniProt PMID:11106728 MGI:5142383 NCBI chrNW_004936552:3,612,104...3,723,275 JBrowse link
G Kif5b kinesin family member 5B ISO (MGI:3763812|PMID:17360972) MGI PMID:17360972 MGI:3763812 NCBI chrNW_004936574:780,074...823,858 JBrowse link
positive regulation of anterograde dense core granule transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Map2 microtubule associated protein 2 ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936845:475,406...752,600 JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chrNW_004936809:902,938...967,771 JBrowse link
G Trim46 tripartite motif containing 46 ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936580:4,678,855...4,690,222 JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Map2 microtubule associated protein 2 ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936845:475,406...752,600 JBrowse link
positive regulation of retrograde dense core granule transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chrNW_004936809:902,938...967,771 JBrowse link
positive regulation of vesicle transport along microtubule term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stk11 serine/threonine kinase 11 ISO (PMID:24643070)
(MGI:5604606|PMID:24643070)
UniProt PMID:24643070 MGI:5604606, RGD:30309925 NCBI chrNW_004936588:579,816...601,033 JBrowse link
retrograde neuronal dense core vesicle transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif1a kinesin family member 1A ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936745:911,651...976,878 JBrowse link
G Kif1b kinesin family member 1B ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936623:4,091,093...4,222,510 JBrowse link
G Kif1c kinesin family member 1C ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936677:2,696,385...2,720,959 JBrowse link
G Kif5a kinesin family member 5A ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936646:1,697,531...1,730,376 JBrowse link
G Kif5b kinesin family member 5B ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936574:780,074...823,858 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12002
    localization 4766
      establishment of localization 3410
        establishment of organelle localization 334
          organelle transport along microtubule 72
            vesicle transport along microtubule 40
              anterograde neuronal dense core vesicle transport + 7
              minus-end-directed vesicle transport along microtubule 0
              negative regulation of vesicle transport along microtubule + 1
              plus-end-directed vesicle transport along microtubule + 3
              positive regulation of vesicle transport along microtubule + 4
              regulation of vesicle transport along microtubule + 5
              retrograde neuronal dense core vesicle transport + 6
              synaptic vesicle transport along microtubule + 18
Path 2
Term Annotations click to browse term
  biological_process 12002
    cellular process 11179
      cellular localization 2326
        establishment of localization in cell 1653
          intracellular transport 1060
            cytoskeleton-dependent intracellular transport 147
              transport along microtubule 137
                organelle transport along microtubule 72
                  vesicle transport along microtubule 40
                    anterograde neuronal dense core vesicle transport + 7
                    minus-end-directed vesicle transport along microtubule 0
                    negative regulation of vesicle transport along microtubule + 1
                    plus-end-directed vesicle transport along microtubule + 3
                    positive regulation of vesicle transport along microtubule + 4
                    regulation of vesicle transport along microtubule + 5
                    retrograde neuronal dense core vesicle transport + 6
                    synaptic vesicle transport along microtubule + 18
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.