Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:embryonic eye morphogenesis
go back to main search page
Accession:GO:0048048 term browser browse the term
Definition:The process occurring in the embryo by which the anatomical structures of the post-embryonic eye are generated and organized.


show annotations for term's descendants           Sort by:
 
embryonic eye morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO (MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695) MGI PMID:16207763, PMID:16611695 MGI:3608158, MGI:3624188 NCBI chr 1:84,940,411...84,994,789
Ensembl chr 1:84,940,411...84,994,789
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 ISO (MGI:3608158|PMID:16207763)
(MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695)
(MGI:3624188|PMID:16611695)
MGI PMID:16207763, PMID:16611695 MGI:3608158, MGI:3624188 NCBI chr 3:40,130,904...40,168,686
Ensembl chr 3:40,132,726...40,168,664
JBrowse link
G EFEMP1 EGF containing fibulin extracellular matrix protein 1 IEA Ensembl GO_REF:0000107 NCBI chr10:56,632,801...56,694,872
Ensembl chr10:56,579,899...56,787,187
JBrowse link
G FBN1 fibrillin 1 IEA Ensembl GO_REF:0000107 NCBI chr30:14,640,973...14,864,151
Ensembl chr30:14,640,973...14,864,151
JBrowse link
G FBN2 fibrillin 2 IEA Ensembl GO_REF:0000107 NCBI chr11:17,311,238...17,551,536
Ensembl chr11:17,311,226...17,551,536
JBrowse link
G FOXL2 forkhead box L2 ISO (MGI:3043431|PMID:15056605) MGI PMID:15056605 MGI:3043431 NCBI chr23:35,145,856...35,147,185 JBrowse link
G MFAP2 microfibril associated protein 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:81,217,197...81,223,726
Ensembl chr 2:81,220,431...81,224,243
JBrowse link
G MFAP5 microfibril associated protein 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:37,028,518...37,042,657
Ensembl chr27:37,028,037...37,040,592
JBrowse link
G RARB retinoic acid receptor beta IEA Ensembl GO_REF:0000107 NCBI chr23:18,207,253...18,931,128
Ensembl chr23:18,207,760...18,482,652
JBrowse link
G RARG retinoic acid receptor gamma IEA Ensembl GO_REF:0000107 NCBI chr27:1,958,432...1,978,471
Ensembl chr27:1,958,204...1,978,476
JBrowse link
G VAX2 ventral anterior homeobox 2 ISO (MGI:1349226|PMID:10595508)
(MGI:2157790|PMID:11830579)
MGI PMID:10595508, PMID:11830579 MGI:1349226, MGI:2157790 NCBI chr10:69,252,926...69,262,225 JBrowse link
closure of optic fissure term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHACTR4 phosphatase and actin regulator 4 IEA Ensembl GO_REF:0000107 NCBI chr 2:71,982,524...72,079,916
Ensembl chr 2:71,984,730...72,080,194
JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STRA6 signaling receptor and transporter of retinol STRA6 IEA Ensembl GO_REF:0000107 NCBI chr30:37,331,834...37,359,449
Ensembl chr30:37,331,832...37,353,529
JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP7 bone morphogenetic protein 7 ISO (MGI:1332362|PMID:10049573) MGI PMID:10049573 MGI:1332362 NCBI chr24:42,203,183...42,294,105
Ensembl chr24:42,204,823...42,294,653
JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:31,522,911...31,525,342
Ensembl chr 1:31,523,799...31,524,995
JBrowse link
G CRYAA crystallin alpha A IEA Ensembl GO_REF:0000107 NCBI chr31:37,307,070...37,310,262
Ensembl chr31:37,307,093...37,310,247
JBrowse link
G FOXF2 forkhead box F2 IEA Ensembl GO_REF:0000107 NCBI chr35:1,841,165...1,846,649
Ensembl chr35:1,841,123...1,846,663
JBrowse link
G FZD5 frizzled class receptor 5 IEA Ensembl GO_REF:0000107 NCBI chr37:16,123,788...16,126,634
Ensembl chr37:16,123,798...16,125,567
JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 IEA Ensembl GO_REF:0000107 NCBI chr17:51,732,079...51,783,534
Ensembl chr17:51,732,016...51,781,063
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 IEA Ensembl GO_REF:0000107 NCBI chr16:9,066,957...9,256,916
Ensembl chr16:9,066,970...9,244,526
JBrowse link
G IFT122 intraflagellar transport 122 ISO (MGI:6094959|PMID:28778798) MGI PMID:28778798 MGI:6094959 NCBI chr20:5,644,002...5,716,702
Ensembl chr20:5,644,089...5,715,906
JBrowse link
G IFT172 intraflagellar transport 172 ISO (MGI:6094959|PMID:28778798) MGI PMID:28778798 MGI:6094959 NCBI chr17:21,389,462...21,426,970
Ensembl chr17:21,389,482...21,426,796
JBrowse link
G IHH Indian hedgehog signaling molecule ISO (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chr37:25,616,942...25,622,989 JBrowse link
G KDM2B lysine demethylase 2B IEA Ensembl GO_REF:0000107 NCBI chr26:7,625,857...7,746,049
Ensembl chr26:7,598,931...7,745,113
JBrowse link
G LRP6 LDL receptor related protein 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
JBrowse link
G SP1 Sp1 transcription factor ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chr27:1,802,587...1,861,187
Ensembl chr27:1,805,184...1,847,226
JBrowse link
G SP3 Sp3 transcription factor IEA Ensembl GO_REF:0000107 NCBI chr36:18,023,750...18,086,995
Ensembl chr36:18,024,627...18,077,587
JBrowse link
G TBX2 T-box transcription factor 2 IEA Ensembl GO_REF:0000107 NCBI chr 9:35,237,323...35,245,066
Ensembl chr 9:35,235,649...35,245,736
JBrowse link
G TFAP2A transcription factor AP-2 alpha ISO (MGI:1313057|PMID:9811866) MGI PMID:9811866 MGI:1313057 NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270
JBrowse link
G TH tyrosine hydroxylase IEA Ensembl GO_REF:0000107 NCBI chr18:46,327,136...46,334,973
Ensembl chr18:46,327,137...46,335,602
JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:15,300,401...15,481,535
Ensembl chr 2:15,299,723...15,481,495
JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARID1A AT-rich interaction domain 1A IEA Ensembl GO_REF:0000107 NCBI chr 2:73,331,606...73,401,151
Ensembl chr 2:73,324,852...73,401,102
JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO (MGI:3624188|PMID:16611695) MGI PMID:16611695 MGI:3624188 NCBI chr 1:84,940,411...84,994,789
Ensembl chr 1:84,940,411...84,994,789
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 IEA Ensembl GO_REF:0000107 NCBI chr 3:40,130,904...40,168,686
Ensembl chr 3:40,132,726...40,168,664
JBrowse link
G PAX2 paired box 2 ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chr28:13,442,894...13,519,853
Ensembl chr28:13,442,893...13,532,094
JBrowse link
optic cup structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TFAP2A transcription factor AP-2 alpha ISO (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270
JBrowse link
optic placode formation involved in camera-type eye formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FRS2 fibroblast growth factor receptor substrate 2 IEA Ensembl GO_REF:0000107 NCBI chr10:11,445,843...11,552,325
Ensembl chr10:11,539,994...11,552,890
JBrowse link
G PROX1 prospero homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:11,996,282...12,047,693
Ensembl chr 7:11,996,703...12,044,036
JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIX3 SIX homeobox 3 IEA Ensembl GO_REF:0000107 NCBI chr10:47,332,875...47,369,359
Ensembl chr10:47,332,888...47,343,635
JBrowse link
G TFAP2A transcription factor AP-2 alpha ISO (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16190
    developmental process 6310
      anatomical structure morphogenesis 2785
        animal organ morphogenesis 1114
          embryonic organ morphogenesis 320
            embryonic eye morphogenesis 36
              embryonic camera-type eye morphogenesis + 27
Path 2
Term Annotations click to browse term
  biological_process 16190
    developmental process 6310
      anatomical structure development 5858
        multicellular organism development 5351
          system development 4984
            animal organ development 3821
              sensory organ development 679
                eye development 455
                  eye morphogenesis 182
                    embryonic eye morphogenesis 36
                      embryonic camera-type eye morphogenesis + 27
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.