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ONTOLOGY REPORT - ANNOTATIONS


Term:embryonic eye morphogenesis
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Accession:GO:0048048 term browser browse the term
Definition:The process occurring in the embryo by which the anatomical structures of the post-embryonic eye are generated and organized.


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embryonic eye morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO (MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695) MGI PMID:16207763, PMID:16611695 MGI:3608158, MGI:3624188 NCBI chr 9:72,900,671...72,953,053
Ensembl chr 9:72,900,671...73,080,442
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 ISS UniProtKB GO_REF:0000024 NCBI chr15:100,879,831...100,916,626
Ensembl chr15:100,877,714...100,916,626
JBrowse link
G EFEMP1 EGF containing fibulin extracellular matrix protein 1 IEP (PMID:25406291) UniProtKB PMID:25406291 NCBI chr 2:55,865,967...55,924,163
Ensembl chr 2:55,865,967...55,924,139
JBrowse link
G FBN1 fibrillin 1 IEP (PMID:25406291) UniProtKB PMID:25406291 NCBI chr15:48,408,313...48,645,709
Ensembl chr15:48,408,306...48,645,849
Ensembl chr15:48,408,306...48,645,849
JBrowse link
G FBN2 fibrillin 2 IEP (PMID:25406291) UniProtKB PMID:25406291 NCBI chr 5:128,257,909...128,538,245
Ensembl chr 5:128,257,909...128,659,185
JBrowse link
G FOXL2 forkhead box L2 IEA Ensembl GO_REF:0000107 NCBI chr 3:138,944,224...138,947,137
Ensembl chr 3:138,944,224...138,947,137
JBrowse link
G MFAP2 microfibril associated protein 2 IEP
IBA
(PMID:25406291)
(PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:25406291 NCBI chr 1:16,974,502...16,981,583
Ensembl chr 1:16,974,502...16,980,632
JBrowse link
G MFAP5 microfibril associated protein 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:8,645,943...8,662,826
Ensembl chr12:8,637,346...8,662,888
JBrowse link
G RARB retinoic acid receptor beta IEA Ensembl GO_REF:0000107 NCBI chr 3:24,829,321...25,597,932
Ensembl chr 3:25,174,332...25,597,932
JBrowse link
G RARG retinoic acid receptor gamma ISS BHF-UCL GO_REF:0000024 NCBI chr12:53,210,569...53,232,231
Ensembl chr12:53,210,567...53,232,980
JBrowse link
G VAX2 ventral anterior homeobox 2 IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107 NCBI chr 2:70,900,551...70,933,917
Ensembl chr 2:70,900,576...70,965,373
JBrowse link
closure of optic fissure term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHACTR4 phosphatase and actin regulator 4 ISS UniProtKB GO_REF:0000024 NCBI chr 1:28,369,740...28,500,364
Ensembl chr 1:28,369,582...28,500,364
JBrowse link
G SOX11 SRY-box transcription factor 11 ISS UniProtKB GO_REF:0000024 NCBI chr 2:5,692,384...5,701,385
Ensembl chr 2:5,692,384...5,701,385
JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STRA6 signaling receptor and transporter of retinol STRA6 IMP (PMID:17273977) DFLAT PMID:17273977 NCBI chr15:74,179,466...74,212,267
Ensembl chr15:74,179,466...74,212,267
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 IMP (PMID:17070479) BHF-UCL PMID:17070479 NCBI chr 7:19,113,047...19,117,636
Ensembl chr 7:19,020,991...19,117,636
JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP7 bone morphogenetic protein 7 IEA Ensembl GO_REF:0000107 NCBI chr20:57,168,753...57,266,641
Ensembl chr20:57,168,753...57,266,641
JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 IEA Ensembl GO_REF:0000107 NCBI chr 6:139,371,807...139,374,648
Ensembl chr 6:139,371,807...139,374,648
JBrowse link
G CRYAA crystallin alpha A ISO (MGI:3775669|PMID:18056999) MGI PMID:18056999 MGI:3775669 NCBI chr21:43,169,008...43,172,810
Ensembl chr21:43,169,008...43,172,805
JBrowse link
G FOXF2 forkhead box F2 IEA Ensembl GO_REF:0000107 NCBI chr 6:1,389,576...1,395,603
Ensembl chr 6:1,389,576...1,395,603
JBrowse link
G FZD5 frizzled class receptor 5 IEA Ensembl GO_REF:0000107 NCBI chr 2:207,753,889...207,769,906
Ensembl chr 2:207,762,598...207,769,906
JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:113,929,324...113,977,869
Ensembl chr 1:113,929,324...113,977,869
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 IEA Ensembl GO_REF:0000107 NCBI chr 7:139,561,570...139,777,998
Ensembl chr 7:139,561,570...139,777,998
JBrowse link
G IFT122 intraflagellar transport 122 ISO (MGI:6094959|PMID:28778798) MGI PMID:28778798 MGI:6094959 NCBI chr 3:129,440,075...129,520,507
Ensembl chr 3:129,440,036...129,520,507
JBrowse link
G IFT172 intraflagellar transport 172 ISO (MGI:6094959|PMID:28778798) MGI PMID:28778798 MGI:6094959 NCBI chr 2:27,444,373...27,489,819
Ensembl chr 2:27,444,377...27,489,805
Ensembl chr 2:27,444,377...27,489,805
JBrowse link
G IHH Indian hedgehog signaling molecule IEA Ensembl GO_REF:0000107 NCBI chr 2:219,054,424...219,060,921
Ensembl chr 2:219,054,424...219,060,921
JBrowse link
G KDM2B lysine demethylase 2B ISS BHF-UCL GO_REF:0000024 NCBI chr12:121,402,288...121,582,268
Ensembl chr12:121,429,096...121,581,023
JBrowse link
G LRP6 LDL receptor related protein 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044
JBrowse link
G PAX6 paired box 6 IEA Ensembl GO_REF:0000107 NCBI chr11:31,789,026...31,817,961
Ensembl chr11:31,784,779...31,817,961
JBrowse link
G SP1 Sp1 transcription factor ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chr12:53,380,176...53,416,446
Ensembl chr12:53,380,176...53,416,446
JBrowse link
G SP3 Sp3 transcription factor IEA Ensembl GO_REF:0000107 NCBI chr 2:173,900,775...173,965,702
Ensembl chr 2:173,880,850...173,965,702
JBrowse link
G TBX2 T-box transcription factor 2 ISS BHF-UCL GO_REF:0000024 NCBI chr17:61,399,843...61,409,466
Ensembl chr17:61,399,843...61,409,466
JBrowse link
G TFAP2A transcription factor AP-2 alpha ISO (MGI:1313057|PMID:9811866) MGI PMID:9811866 MGI:1313057 NCBI chr 6:10,396,677...10,419,897
Ensembl chr 6:10,393,186...10,419,659
JBrowse link
G TH tyrosine hydroxylase ISS BHF-UCL GO_REF:0000024 NCBI chr11:2,163,929...2,174,081
Ensembl chr11:2,163,929...2,171,877
Ensembl chr11:2,163,929...2,171,877
JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr10:31,318,417...31,529,804
Ensembl chr10:31,318,495...31,529,814
JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARID1A AT-rich interaction domain 1A IEA Ensembl GO_REF:0000107 NCBI chr 1:26,696,015...26,782,104
Ensembl chr 1:26,693,236...26,782,104
JBrowse link
G WNT16 Wnt family member 16 ISS (PMID:16258938) BHF-UCL PMID:16258938 NCBI chr 7:121,325,367...121,341,104
Ensembl chr 7:121,325,367...121,341,104
JBrowse link
G WNT5A Wnt family member 5A ISS (PMID:16258938) BHF-UCL PMID:16258938 NCBI chr 3:55,465,715...55,505,261
Ensembl chr 3:55,465,715...55,490,539
JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO (MGI:3624188|PMID:16611695) MGI PMID:16611695 MGI:3624188 NCBI chr 9:72,900,671...72,953,053
Ensembl chr 9:72,900,671...73,080,442
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 IEA Ensembl GO_REF:0000107 NCBI chr15:100,879,831...100,916,626
Ensembl chr15:100,877,714...100,916,626
JBrowse link
G PAX2 paired box 2 ISS UniProtKB GO_REF:0000024 NCBI chr10:100,735,396...100,829,944
Ensembl chr10:100,735,603...100,829,941
Ensembl chr10:100,735,603...100,829,941
JBrowse link
optic cup structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TFAP2A transcription factor AP-2 alpha ISS UniProtKB GO_REF:0000024 NCBI chr 6:10,396,677...10,419,897
Ensembl chr 6:10,393,186...10,419,659
JBrowse link
optic placode formation involved in camera-type eye formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FRS2 fibroblast growth factor receptor substrate 2 IEA Ensembl GO_REF:0000107 NCBI chr12:69,470,371...69,579,793
Ensembl chr12:69,470,349...69,579,789
JBrowse link
G PROX1 prospero homeobox 1 ISS (PMID:11850194) BHF-UCL PMID:11850194 NCBI chr 1:213,983,239...214,041,510
Ensembl chr 1:213,983,181...214,041,510
JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIX3 SIX homeobox 3 ISS UniProtKB GO_REF:0000024 NCBI chr 2:44,941,702...44,946,071
Ensembl chr 2:44,941,702...44,946,071
JBrowse link
G TFAP2A transcription factor AP-2 alpha ISS UniProtKB GO_REF:0000024 NCBI chr 6:10,396,677...10,419,897
Ensembl chr 6:10,393,186...10,419,659
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18672
    developmental process 7466
      anatomical structure morphogenesis 3097
        animal organ morphogenesis 1281
          embryonic organ morphogenesis 346
            embryonic eye morphogenesis 41
              embryonic camera-type eye morphogenesis + 32
Path 2
Term Annotations click to browse term
  biological_process 18672
    developmental process 7466
      anatomical structure development 6873
        multicellular organism development 6346
          system development 5749
            animal organ development 4412
              sensory organ development 712
                eye development 482
                  eye morphogenesis 198
                    embryonic eye morphogenesis 41
                      embryonic camera-type eye morphogenesis + 32
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.