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ONTOLOGY REPORT - ANNOTATIONS


Term:embryonic eye morphogenesis
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Accession:GO:0048048 term browser browse the term
Definition:The process occurring in the embryo by which the anatomical structures of the post-embryonic eye are generated and organized.


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embryonic eye morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase family 1, subfamily A1 IGI (MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695) MGI PMID:16207763, PMID:16611695 MGI:3608158, MGI:3624188 NCBI chr19:20,492,583...20,643,463
Ensembl chr19:20,492,715...20,643,465
JBrowse link
G Aldh1a3 aldehyde dehydrogenase family 1, subfamily A3 IMP
IGI
(MGI:3608158|PMID:16207763)
(MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695)
(MGI:3624188|PMID:16611695)
MGI PMID:16207763, PMID:16611695 MGI:3608158, MGI:3624188 NCBI chr 7:66,390,892...66,427,477
Ensembl chr 7:66,390,890...66,427,517
JBrowse link
G Efemp1 epidermal growth factor-containing fibulin-like extracellular matrix protein 1 ISO (PMID:25406291) UniProtKB PMID:25406291 NCBI chr11:28,853,154...28,926,743
Ensembl chr11:28,853,204...28,926,743
JBrowse link
G Fbn1 fibrillin 1 ISO (PMID:25406291) UniProtKB PMID:25406291 NCBI chr 2:125,300,594...125,506,485
Ensembl chr 2:125,300,594...125,507,993
JBrowse link
G Fbn2 fibrillin 2 ISO (PMID:25406291) UniProtKB PMID:25406291 NCBI chr18:58,008,623...58,210,572
Ensembl chr18:58,008,623...58,210,487
JBrowse link
G Foxl2 forkhead box L2 IMP (MGI:3043431|PMID:15056605) MGI PMID:15056605 MGI:3043431 NCBI chr 9:98,955,607...98,958,126
Ensembl chr 9:98,955,288...98,958,543
JBrowse link
G Mfap2 microfibrillar-associated protein 2 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 4:141,010,424...141,015,976
Ensembl chr 4:141,010,418...141,015,984
JBrowse link
G Mfap5 microfibrillar associated protein 5 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 6:122,513,584...122,529,290
Ensembl chr 6:122,505,845...122,529,290
JBrowse link
G Rarb retinoic acid receptor, beta IGI (MGI:3608158|PMID:16207763) MGI PMID:16207763 MGI:3608158 NCBI chr14:16,430,839...17,082,331
Ensembl chr14:16,430,839...16,819,156
JBrowse link
G Rarg retinoic acid receptor, gamma IGI (MGI:3608158|PMID:16207763) MGI PMID:16207763 MGI:3608158 NCBI chr15:102,234,938...102,257,522
Ensembl chr15:102,234,938...102,257,517
JBrowse link
G Vax2 ventral anterior homeobox 2 IMP
IDA
(MGI:2157790|PMID:11830579)
(MGI:1349226|PMID:10595508)
MGI PMID:10595508, PMID:11830579 MGI:1349226, MGI:2157790 NCBI chr 6:83,711,239...83,738,313
Ensembl chr 6:83,711,264...83,738,313
JBrowse link
closure of optic fissure term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 IMP (MGI:3719969|PMID:17609112) UniProt PMID:17609112 MGI:3719969 NCBI chr 4:132,355,922...132,422,446
Ensembl chr 4:132,355,923...132,422,489
JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 IMP (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chr12:27,334,268...27,342,718
Ensembl chr12:27,334,264...27,342,574
JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 stimulated by retinoic acid gene 6 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 9:58,063,793...58,154,004
Ensembl chr 9:58,063,788...58,153,996
JBrowse link
G Twist1 twist basic helix-loop-helix transcription factor 1 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr12:33,957,671...33,959,831
Ensembl chr12:33,957,671...33,959,829
JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 IMP (MGI:1332362|PMID:10049573) MGI PMID:10049573 MGI:1332362 NCBI chr 2:172,868,012...172,940,321
Ensembl chr 2:172,868,012...172,940,321
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 IGI (MGI:3807101|PMID:18653562) MGI PMID:18653562 MGI:3807101 NCBI chr10:17,723,228...17,725,674
Ensembl chr10:17,723,218...17,725,674
JBrowse link
G Cryaa crystallin, alpha A IMP (MGI:3775669|PMID:18056999) MGI PMID:18056999 MGI:3775669 NCBI chr17:31,677,931...31,681,730
Ensembl chr17:31,677,807...31,681,733
JBrowse link
G Foxf2 forkhead box F2 IMP (MGI:5297296|PMID:22022403) BHF-UCL PMID:22022403 MGI:5297296 NCBI chr13:31,625,816...31,631,406
Ensembl chr13:31,625,816...31,631,403
JBrowse link
G Fzd5 frizzled class receptor 5 IMP (MGI:3826935|PMID:18832390) CACAO PMID:18832390 MGI:3826935 NCBI chr 1:64,730,558...64,737,750
Ensembl chr 1:64,730,558...64,737,751
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 IMP (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 3:103,739,815...103,791,894
Ensembl chr 3:103,739,815...103,791,563
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 IMP (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 6:38,687,512...38,876,331
Ensembl chr 6:38,694,390...38,876,165
JBrowse link
G Ift122 intraflagellar transport 122 IMP (MGI:6094959|PMID:28778798) MGI PMID:28778798 MGI:6094959 NCBI chr 6:115,853,379...115,926,699
Ensembl chr 6:115,853,470...115,926,699
JBrowse link
G Ift172 intraflagellar transport 172 IMP (MGI:6094959|PMID:28778798) MGI PMID:28778798 MGI:6094959 NCBI chr 5:31,253,279...31,291,391
Ensembl chr 5:31,253,277...31,291,116
JBrowse link
G Ihh Indian hedgehog IMP (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chr 1:74,945,315...74,951,672
Ensembl chr 1:74,945,315...74,951,672
JBrowse link
G Kdm2b lysine (K)-specific demethylase 2B IMP (MGI:4949568|PMID:21220025) BHF-UCL PMID:21220025 MGI:4949568 NCBI chr 5:122,870,664...122,989,270
Ensembl chr 5:122,870,665...122,989,823
JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 IMP
IBA
(MGI:3823171|PMID:18985738)
(MGI:6201960|PMID:21873635)
(MGI:4413396|PMID:19653321)
MGI
GO_Central
PMID:18985738, PMID:19653321, PMID:21873635 MGI:3823171, MGI:4413396, MGI:6201960 NCBI chr 6:134,446,476...134,566,913
Ensembl chr 6:134,446,476...134,566,965
JBrowse link
G Pax6 paired box 6 IGI (MGI:3807101|PMID:18653562) MGI PMID:18653562 MGI:3807101 NCBI chr 2:105,668,896...105,698,410
Ensembl chr 2:105,668,900...105,697,364
JBrowse link
G Sp1 trans-acting transcription factor 1 IGI (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chr15:102,406,316...102,436,404
Ensembl chr15:102,406,143...102,436,404
JBrowse link
G Sp3 trans-acting transcription factor 3 IGI (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chr 2:72,936,430...72,980,446
Ensembl chr 2:72,936,427...72,980,446
JBrowse link
G Tbx2 T-box 2 IMP (MGI:3487212|PMID:15459098) BHF-UCL PMID:15459098 MGI:3487212 NCBI chr11:85,832,615...85,841,948
Ensembl chr11:85,832,551...85,841,948
JBrowse link
G Tfap2a transcription factor AP-2, alpha IMP (MGI:1313057|PMID:9811866) MGI PMID:9811866 MGI:1313057 NCBI chr13:40,713,802...40,738,238
Ensembl chr13:40,715,302...40,738,376
JBrowse link
G Th tyrosine hydroxylase IMP (MGI:3617102|PMID:16445854) BHF-UCL PMID:16445854 MGI:3617102 NCBI chr 7:142,892,779...142,899,995
Ensembl chr 7:142,892,752...142,931,128
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 IMP (MGI:3790562|PMID:18436818) MGI PMID:18436818 MGI:3790562 NCBI chr18:5,591,327...5,775,468
Ensembl chr18:5,591,860...5,775,467
JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT rich interactive domain 1A (SWI-like) IMP (MGI:5466629|PMID:23129809) MGI PMID:23129809 MGI:5466629 NCBI chr 4:133,679,008...133,756,769
Ensembl chr 4:133,679,008...133,756,769
JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase family 1, subfamily A1 IGI (MGI:3624188|PMID:16611695) MGI PMID:16611695 MGI:3624188 NCBI chr19:20,492,583...20,643,463
Ensembl chr19:20,492,715...20,643,465
JBrowse link
G Aldh1a3 aldehyde dehydrogenase family 1, subfamily A3 IGI (MGI:3624188|PMID:16611695) MGI PMID:16611695 MGI:3624188 NCBI chr 7:66,390,892...66,427,477
Ensembl chr 7:66,390,890...66,427,517
JBrowse link
G Pax2 paired box 2 IMP (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chr19:44,746,601...44,838,269
Ensembl chr19:44,756,045...44,837,871
JBrowse link
optic cup structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2, alpha IMP (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chr13:40,713,802...40,738,238
Ensembl chr13:40,715,302...40,738,376
JBrowse link
optic placode formation involved in camera-type eye formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 IMP (MGI:3513737|PMID:15569927) MGI PMID:15569927 MGI:3513737 NCBI chr10:117,070,127...117,148,474
Ensembl chr10:117,069,427...117,148,534
JBrowse link
G Prox1 prospero homeobox 1 IEP (PMID:11850194) BHF-UCL PMID:11850194 NCBI chr 1:190,118,035...190,170,827
Ensembl chr 1:190,118,035...190,170,714
JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 sine oculis-related homeobox 3 IDA (MGI:2136715|PMID:11458394) UniProt PMID:11458394 MGI:2136715 NCBI chr17:85,613,608...85,626,191
Ensembl chr17:85,613,608...85,629,302
JBrowse link
G Tfap2a transcription factor AP-2, alpha IMP (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chr13:40,713,802...40,738,238
Ensembl chr13:40,715,302...40,738,376
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23386
    developmental process 7030
      anatomical structure morphogenesis 2901
        animal organ morphogenesis 1155
          embryonic organ morphogenesis 332
            embryonic eye morphogenesis 39
              embryonic camera-type eye morphogenesis + 30
Path 2
Term Annotations click to browse term
  biological_process 23386
    developmental process 7030
      anatomical structure development 6504
        multicellular organism development 5968
          system development 5380
            animal organ development 4134
              sensory organ development 696
                eye development 464
                  eye morphogenesis 189
                    embryonic eye morphogenesis 39
                      embryonic camera-type eye morphogenesis + 30
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.