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ONTOLOGY REPORT - ANNOTATIONS


Term:embryonic eye morphogenesis
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Accession:GO:0048048 term browser browse the term
Definition:The process occurring in the embryo by which the anatomical structures of the post-embryonic eye are generated and organized.


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embryonic eye morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO (MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695) MGI PMID:16207763, PMID:16611695 MGI:3608158, MGI:3624188 NCBI chr 1:226,163,347...226,217,342
Ensembl chr 1:226,161,296...226,217,312
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 ISO (MGI:3624188|PMID:16611695)
(MGI:3608158|PMID:16207763)
(MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695)
MGI PMID:16207763, PMID:16611695 MGI:3608158, MGI:3624188 NCBI chr 1:139,451,080...139,491,514
Ensembl chr 1:139,451,049...139,491,513
JBrowse link
G EFEMP1 EGF containing fibulin extracellular matrix protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:85,407,677...85,473,251
Ensembl chr 3:85,268,311...85,473,254
JBrowse link
G FBN1 fibrillin 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:123,102,011...123,359,649
Ensembl chr 1:123,102,009...123,359,649
JBrowse link
G FBN2 fibrillin 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:131,150,665...131,370,241
Ensembl chr 2:131,152,127...131,370,466
JBrowse link
G FOXL2 forkhead box L2 IEA Ensembl GO_REF:0000107 NCBI chr13:79,708,693...79,709,825
Ensembl chr13:79,709,013...79,709,825
JBrowse link
G MFAP2 microfibril associated protein 2 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 6:75,607,515...75,615,680
Ensembl chr 6:75,607,513...75,615,641
JBrowse link
G MFAP5 microfibril associated protein 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:62,742,520...62,757,522
Ensembl chr 5:62,742,315...62,759,190
JBrowse link
G RARB retinoic acid receptor beta ISO (MGI:3608158|PMID:16207763) MGI PMID:16207763 MGI:3608158 NCBI chr13:12,336,387...12,507,688 JBrowse link
G RARG retinoic acid receptor gamma IEA Ensembl GO_REF:0000107 NCBI chr 5:18,436,267...18,458,625
Ensembl chr 5:18,436,267...18,458,625
JBrowse link
G VAX2 ventral anterior homeobox 2 IEA Ensembl GO_REF:0000107 NCBI chr 3:71,593,807...71,622,487
Ensembl chr 3:71,593,807...71,622,444
JBrowse link
closure of optic fissure term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHACTR4 phosphatase and actin regulator 4 IEA Ensembl GO_REF:0000107 NCBI chr 6:85,411,993...85,529,441
Ensembl chr 6:85,412,180...85,528,746
JBrowse link
G SOX11 SRY-box transcription factor 11 ISS UniProt GO_REF:0000024 NCBI chr 3:129,797,438...129,800,568
Ensembl chr 3:129,798,704...129,800,329
JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STRA6 signaling receptor and transporter of retinol STRA6 IEA Ensembl GO_REF:0000107 NCBI chr 7:59,317,930...59,347,274
Ensembl chr 7:59,318,010...59,347,267
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 ISO (PMID:17070479) BHF-UCL PMID:17070479 NCBI chr 9:88,286,911...88,290,131 JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP7 bone morphogenetic protein 7 IEA Ensembl GO_REF:0000107 NCBI chr17:57,567,770...57,676,516
Ensembl chr17:57,584,091...57,676,944
JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:25,155,652...25,158,517
Ensembl chr 1:25,155,664...25,160,279
JBrowse link
G CRYAA crystallin alpha A IEA Ensembl GO_REF:0000107 NCBI chr13:206,293,877...206,297,050 JBrowse link
G FOXF2 forkhead box F2 IEA Ensembl GO_REF:0000107 NCBI chr 7:715,001...719,781
Ensembl chr 7:714,850...719,267
JBrowse link
G FZD5 frizzled class receptor 5 IEA Ensembl GO_REF:0000107 NCBI chr15:110,913,990...110,921,388
Ensembl chr15:110,911,567...110,921,353
JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 IEA Ensembl GO_REF:0000107 NCBI chr 4:106,570,950...106,627,114
Ensembl chr 4:106,572,724...106,627,152
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 IEA Ensembl GO_REF:0000107 NCBI chr18:9,940,535...10,141,815
Ensembl chr18:9,747,737...10,135,083
JBrowse link
G IFT122 intraflagellar transport 122 ISO (MGI:6094959|PMID:28778798) MGI PMID:28778798 MGI:6094959 NCBI chr13:68,828,710...68,902,062
Ensembl chr13:68,828,705...68,902,062
JBrowse link
G IFT172 intraflagellar transport 172 ISO (MGI:6094959|PMID:28778798) MGI PMID:28778798 MGI:6094959 NCBI chr 3:111,683,674...111,718,504
Ensembl chr 3:111,683,669...111,718,971
JBrowse link
G IHH Indian hedgehog signaling molecule IEA Ensembl GO_REF:0000107 NCBI chr15:121,083,750...121,090,548
Ensembl chr15:121,083,753...121,090,121
JBrowse link
G KDM2B lysine demethylase 2B IEA Ensembl GO_REF:0000107 NCBI chr14:31,057,121...31,203,093
Ensembl chr14:31,057,121...31,203,092
JBrowse link
G LRP6 LDL receptor related protein 6 ISO (MGI:3823171|PMID:18985738)
(MGI:4413396|PMID:19653321)
MGI PMID:18985738, PMID:19653321 MGI:3823171, MGI:4413396 NCBI chr 5:60,149,041...60,318,719
Ensembl chr 5:60,149,028...60,314,689
JBrowse link
G PAX6 paired box 6 IEA Ensembl GO_REF:0000107 NCBI chr 2:28,971,565...29,001,149
Ensembl chr 2:28,971,567...29,001,200
JBrowse link
G SP1 Sp1 transcription factor ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chr 5:18,588,763...18,633,177
Ensembl chr 5:18,588,758...18,630,089
JBrowse link
G SP3 Sp3 transcription factor IEA Ensembl GO_REF:0000107 NCBI chr15:79,935,986...79,990,139
Ensembl chr15:79,935,994...80,025,850
JBrowse link
G TBX2 T-box transcription factor 2 IEA Ensembl GO_REF:0000107 NCBI chr12:36,878,662...36,887,513
Ensembl chr12:36,878,675...36,887,513
JBrowse link
G TFAP2A transcription factor AP-2 alpha ISO (MGI:1313057|PMID:9811866) MGI PMID:9811866 MGI:1313057 NCBI chr 7:7,221,654...7,244,626
Ensembl chr 7:7,221,656...7,244,477
JBrowse link
G TH tyrosine hydroxylase IEA Ensembl GO_REF:0000107 NCBI chr 2:1,499,628...1,506,180
Ensembl chr 2:1,499,618...1,506,615
JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr10:42,013,114...42,216,139
Ensembl chr10:42,013,045...42,214,205
JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARID1A AT-rich interaction domain 1A IEA Ensembl GO_REF:0000107 NCBI chr 6:84,049,729...84,124,302
Ensembl chr 6:84,049,365...84,123,384
JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO (MGI:3624188|PMID:16611695) MGI PMID:16611695 MGI:3624188 NCBI chr 1:226,163,347...226,217,342
Ensembl chr 1:226,161,296...226,217,312
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 IEA Ensembl GO_REF:0000107 NCBI chr 1:139,451,080...139,491,514
Ensembl chr 1:139,451,049...139,491,513
JBrowse link
G PAX2 paired box 2 ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chr14:111,822,334...111,914,950
Ensembl chr14:111,834,168...111,914,304
JBrowse link
optic cup structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TFAP2A transcription factor AP-2 alpha ISO (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chr 7:7,221,654...7,244,626
Ensembl chr 7:7,221,656...7,244,477
JBrowse link
optic placode formation involved in camera-type eye formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FRS2 fibroblast growth factor receptor substrate 2 IEA Ensembl GO_REF:0000107 NCBI chr 5:33,725,432...33,852,952
Ensembl chr 5:33,725,444...33,849,976
JBrowse link
G PROX1 prospero homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:129,527,704...129,583,693
Ensembl chr 9:129,532,164...129,580,979
JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIX3 SIX homeobox 3 IEA Ensembl GO_REF:0000107 NCBI chr 3:95,521,330...95,527,004
Ensembl chr 3:95,521,333...95,525,436
JBrowse link
G TFAP2A transcription factor AP-2 alpha ISO (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chr 7:7,221,654...7,244,626
Ensembl chr 7:7,221,656...7,244,477
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16548
    developmental process 6302
      anatomical structure morphogenesis 2774
        animal organ morphogenesis 1119
          embryonic organ morphogenesis 328
            embryonic eye morphogenesis 39
              embryonic camera-type eye morphogenesis + 30
Path 2
Term Annotations click to browse term
  biological_process 16548
    developmental process 6302
      anatomical structure development 5842
        multicellular organism development 5340
          system development 4963
            animal organ development 3800
              sensory organ development 682
                eye development 457
                  eye morphogenesis 186
                    embryonic eye morphogenesis 39
                      embryonic camera-type eye morphogenesis + 30
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.