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ONTOLOGY REPORT - ANNOTATIONS


Term:embryonic eye morphogenesis
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Accession:GO:0048048 term browser browse the term
Definition:The process occurring in the embryo by which the anatomical structures of the post-embryonic eye are generated and organized.


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embryonic eye morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 ISO (MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695) MGI PMID:16207763, PMID:16611695 MGI:3608158, MGI:3624188 NCBI chrNW_004936503:8,869,073...8,953,726 JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 ISO (MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695)
(MGI:3624188|PMID:16611695)
MGI PMID:16207763, PMID:16611695 MGI:3608158, MGI:3624188 NCBI chrNW_004936483:2,930,781...2,967,309 JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 ISO (PMID:25406291) UniProtKB PMID:25406291 NCBI chrNW_004936491:2,159,654...2,214,480 JBrowse link
G Fbn1 fibrillin 1 ISO (PMID:25406291) UniProtKB PMID:25406291 NCBI chrNW_004936471:10,747,030...10,969,223 JBrowse link
G Fbn2 fibrillin 2 ISO (PMID:25406291) UniProtKB PMID:25406291 NCBI chrNW_004936504:1,535,629...1,757,386 JBrowse link
G Foxl2 forkhead box L2 ISO (MGI:3043431|PMID:15056605) MGI PMID:15056605 MGI:3043431 NCBI chrNW_004936540:1,136,403...1,137,984 JBrowse link
G Mfap2 microfibril associated protein 2 ISO (PMID:25406291) UniProtKB PMID:25406291 NCBI chrNW_004936474:3,959,499...3,963,326 JBrowse link
G Rarb retinoic acid receptor beta ISO (MGI:3608158|PMID:16207763) MGI PMID:16207763 MGI:3608158 NCBI chrNW_004936473:16,983,829...17,146,517 JBrowse link
G Rarg retinoic acid receptor gamma ISO (MGI:3608158|PMID:16207763) MGI PMID:16207763 MGI:3608158 NCBI chrNW_004936512:10,502,954...10,524,796 JBrowse link
G Vax2 ventral anterior homeobox 2 ISO (MGI:2157790|PMID:11830579)
(MGI:1349226|PMID:10595508)
MGI PMID:10595508, PMID:11830579 MGI:1349226, MGI:2157790 NCBI chrNW_004936491:15,079,446...15,110,238 JBrowse link
closure of optic fissure term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 ISO (MGI:3719969|PMID:17609112) UniProt PMID:17609112 MGI:3719969 NCBI chrNW_004936474:12,517,800...12,613,170 JBrowse link
G Sox11 SRY-box transcription factor 11 ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chrNW_004937107:203,120...207,185 JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 signaling receptor and transporter of retinol STRA6 ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chrNW_004936471:33,224,174...33,245,076 JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO (PMID:17070479) BHF-UCL PMID:17070479 NCBI chrNW_004936546:5,331,220...5,332,669 JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 ISO (MGI:1332362|PMID:10049573) MGI PMID:10049573 MGI:1332362 NCBI chrNW_004936530:71,965...143,940 JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 ISO (MGI:3807101|PMID:18653562) MGI PMID:18653562 MGI:3807101 NCBI chrNW_004936560:6,353,901...6,356,749 JBrowse link
G Cryaa crystallin alpha A ISO (MGI:3775669|PMID:18056999) MGI PMID:18056999 MGI:3775669 NCBI chrNW_004936500:931,804...935,185 JBrowse link
G Foxf2 forkhead box F2 ISO (MGI:5297296|PMID:22022403) BHF-UCL PMID:22022403 MGI:5297296 NCBI chrNW_004936633:2,538,209...2,543,649 JBrowse link
G Fzd5 frizzled class receptor 5 ISO (MGI:3826935|PMID:18832390) CACAO PMID:18832390 MGI:3826935 NCBI chrNW_004936631:3,909,046...3,915,939 JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004936690:2,293,740...2,353,450 JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004936592:3,800,619...3,934,347 JBrowse link
G Ift122 intraflagellar transport 122 ISO (MGI:6094959|PMID:28778798) MGI PMID:28778798 MGI:6094959 NCBI chrNW_004936602:908,034...956,634 JBrowse link
G Ift172 intraflagellar transport 172 ISO (MGI:6094959|PMID:28778798) MGI PMID:28778798 MGI:6094959 NCBI chrNW_004936493:5,108,437...5,145,160 JBrowse link
G Ihh Indian hedgehog signaling molecule ISO (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chrNW_004936569:1,474,693...1,480,562 JBrowse link
G Kdm2b lysine demethylase 2B ISO (MGI:4949568|PMID:21220025) BHF-UCL PMID:21220025 MGI:4949568 NCBI chrNW_004936558:2,771,420...2,897,694 JBrowse link
G Lrp6 LDL receptor related protein 6 ISO (MGI:4413396|PMID:19653321)
(MGI:3823171|PMID:18985738)
MGI PMID:18985738, PMID:19653321 MGI:3823171, MGI:4413396 NCBI chrNW_004936587:5,065,200...5,143,029 JBrowse link
G Pax6 paired box 6 ISO (MGI:3807101|PMID:18653562) MGI PMID:18653562 MGI:3807101 NCBI chrNW_004936533:5,952,529...5,980,889 JBrowse link
G Sp1 Sp1 transcription factor ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chrNW_004936512:10,655,116...10,693,025 JBrowse link
G Sp3 Sp3 transcription factor ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chrNW_004936509:3,740,393...3,782,873 JBrowse link
G Tbx2 T-box transcription factor 2 ISO (MGI:3487212|PMID:15459098) BHF-UCL PMID:15459098 MGI:3487212 NCBI chrNW_004936490:2,769,264...2,778,342 JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO (MGI:1313057|PMID:9811866) MGI PMID:9811866 MGI:1313057 NCBI chrNW_004936534:2,481,804...2,518,573 JBrowse link
G Th tyrosine hydroxylase ISO (MGI:3617102|PMID:16445854) BHF-UCL PMID:16445854 MGI:3617102 NCBI chrNW_004936794:478,651...486,887 JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 ISO (MGI:3790562|PMID:18436818) MGI PMID:18436818 MGI:3790562 NCBI chrNW_004936574:17,643...175,762 JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A ISO (MGI:5466629|PMID:23129809) MGI PMID:23129809 MGI:5466629 NCBI chrNW_004936474:11,148,857...11,197,312 JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 ISO (MGI:3624188|PMID:16611695) MGI PMID:16611695 MGI:3624188 NCBI chrNW_004936503:8,869,073...8,953,726 JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 ISO (MGI:3624188|PMID:16611695) MGI PMID:16611695 MGI:3624188 NCBI chrNW_004936483:2,930,781...2,967,309 JBrowse link
G Pax2 paired box 2 ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chrNW_004936600:4,850,594...4,939,010 JBrowse link
optic cup structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2 alpha ISO (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chrNW_004936534:2,481,804...2,518,573 JBrowse link
optic placode formation involved in camera-type eye formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 ISO (MGI:3513737|PMID:15569927) MGI PMID:15569927 MGI:3513737 NCBI chrNW_004936545:7,286,018...7,407,623 JBrowse link
G Prox1 prospero homeobox 1 ISO (PMID:11850194) BHF-UCL PMID:11850194 NCBI chrNW_004936628:4,185,712...4,240,680 JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 SIX homeobox 3 ISO (MGI:2136715|PMID:11458394) UniProt PMID:11458394 MGI:2136715 NCBI chrNW_004936508:7,103,578...7,106,588 JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chrNW_004936534:2,481,804...2,518,573 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12002
    developmental process 5648
      anatomical structure morphogenesis 2521
        animal organ morphogenesis 1021
          embryonic organ morphogenesis 311
            embryonic eye morphogenesis 38
              embryonic camera-type eye morphogenesis + 30
Path 2
Term Annotations click to browse term
  biological_process 12002
    developmental process 5648
      anatomical structure development 5286
        multicellular organism development 4845
          system development 4567
            animal organ development 3514
              sensory organ development 627
                eye development 407
                  eye morphogenesis 167
                    embryonic eye morphogenesis 38
                      embryonic camera-type eye morphogenesis + 30
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.