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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of neuronal synaptic plasticity
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Accession:GO:0048168 term browser browse the term
Definition:A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers.
Comment:Note that the syntax of the definition of this term is different from the usual regulation syntax because it describes regulation of a trait rather than regulation of a process.


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regulation of neuronal synaptic plasticity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acp4 acid phosphatase 4 JBrowse link 1 100,226,311 100,234,536 RGD:1600115
RGD:1624291
G Arc activity-regulated cytoskeleton-associated protein JBrowse link 7 115,907,097 115,911,059 RGD:61538
RGD:13792537
G Bcan brevican JBrowse link 2 187,359,674 187,373,133 RGD:1578390
G Bhlhe40 basic helix-loop-helix family, member e40 JBrowse link 4 140,703,619 140,709,319 RGD:68312
G Bhlhe41 basic helix-loop-helix family, member e41 JBrowse link 4 180,230,742 180,235,138 RGD:68312
G Camk2a calcium/calmodulin-dependent protein kinase II alpha JBrowse link 18 56,193,978 56,295,869 RGD:1624291
RGD:1600115
G Cntn2 contactin 2 JBrowse link 13 49,280,913 49,314,061 RGD:1624291
RGD:1600115
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 JBrowse link 1 143,171,457 143,278,485 RGD:1624291
G Cpg1 candidate plasticity gene 1 JBrowse link 6 123,034,304 123,046,297 RGD:632508
G Egr2 early growth response 2 JBrowse link 20 22,452,170 22,461,018 RGD:728620
G Ephb2 Eph receptor B2 JBrowse link 5 155,024,478 155,143,539 RGD:1624291
G Grin1 glutamate ionotropic receptor NMDA type subunit 1 JBrowse link 3 2,507,745 2,534,664 RGD:1624291
G Gsk3b glycogen synthase kinase 3 beta JBrowse link 11 65,060,884 65,208,842 RGD:1641844
G Jph3 junctophilin 3 JBrowse link 19 54,553,419 54,613,477 RGD:1624291
RGD:1600115
G Kalrn kalirin, RhoGEF kinase JBrowse link 11 69,484,293 70,025,682 RGD:1624291
G Kcnn2 potassium calcium-activated channel subfamily N member 2 JBrowse link 18 39,331,894 39,479,574 RGD:7205439
G Mctp1 multiple C2 and transmembrane domain containing 1 JBrowse link 2 3,400,883 4,089,949 RGD:1600115
G Mylk2 myosin light chain kinase 2 JBrowse link 3 148,386,185 148,397,851 RGD:1600505
G Ncdn neurochondrin JBrowse link 5 144,769,452 144,779,271 RGD:724406
G Nsmf NMDA receptor synaptonuclear signaling and neuronal migration factor JBrowse link 3 2,262,173 2,270,996 RGD:8553324
RGD:1600115
G Pmch pro-melanin-concentrating hormone JBrowse link 7 28,655,206 28,656,522 RGD:729531
G Rac1 Rac family small GTPase 1 JBrowse link 12 13,090,316 13,111,841 RGD:1624291
G Rasgrf1 RAS protein-specific guanine nucleotide-releasing factor 1 JBrowse link 8 97,277,250 97,405,095 RGD:1624291
RGD:1600115
G Rheb Ras homolog, mTORC1 binding JBrowse link 4 6,827,429 6,873,384 RGD:729721
G Rnf39 ring finger protein 39 JBrowse link 20 2,098,375 2,103,864 RGD:633280
G S100b S100 calcium binding protein B JBrowse link 20 13,130,633 13,142,856 RGD:1624291
RGD:1600115
G Snca synuclein alpha JBrowse link 4 90,782,412 90,883,236 RGD:1624291
G Star steroidogenic acute regulatory protein JBrowse link 16 71,036,204 71,040,847 RGD:1600077
G Syp synaptophysin JBrowse link X 15,694,699 15,709,244 RGD:730263
G Vgf VGF nerve growth factor inducible JBrowse link 12 22,677,302 22,680,630 RGD:2289061
negative regulation of short-term neuronal synaptic plasticity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Syt4 synaptotagmin 4 JBrowse link 18 24,172,580 24,181,989 RGD:1624291
RGD:1600115
positive regulation of long-term neuronal synaptic plasticity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bdnf brain-derived neurotrophic factor JBrowse link 3 100,768,637 100,819,216 RGD:4891114
G Ephb2 Eph receptor B2 JBrowse link 5 155,024,478 155,143,539 RGD:1624291
RGD:1600115
G Grm5 glutamate metabotropic receptor 5 JBrowse link 1 151,207,846 151,785,038 RGD:731147
G Kdr kinase insert domain receptor JBrowse link 14 34,727,677 34,787,127 RGD:2292019
G Kit KIT proto-oncogene receptor tyrosine kinase JBrowse link 14 35,072,131 35,149,638 RGD:2292520
G Neurl1 neuralized E3 ubiquitin protein ligase 1 JBrowse link 1 266,953,006 267,038,879 RGD:1624291
RGD:1600115
G Nptn neuroplastin JBrowse link 8 63,379,062 63,445,694 RGD:8553916
G Shank3 SH3 and multiple ankyrin repeat domains 3 JBrowse link 7 130,474,278 130,534,679 RGD:1624291
RGD:1600115
regulation of long-term neuronal synaptic plasticity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agt angiotensinogen JBrowse link 19 57,321,594 57,333,460 RGD:1582105
G App amyloid beta precursor protein JBrowse link 11 24,425,013 24,641,872 RGD:1624291
RGD:1600115
G Bdnf brain-derived neurotrophic factor JBrowse link 3 100,768,637 100,819,216 RGD:724690
G Camk2b calcium/calmodulin-dependent protein kinase II beta JBrowse link 14 86,208,876 86,297,727 RGD:1624291
G Camk2g calcium/calmodulin-dependent protein kinase II gamma JBrowse link 15 3,936,721 3,995,740 RGD:724617
G Dlg4 discs large MAGUK scaffold protein 4 JBrowse link 10 56,625,845 56,655,543 RGD:1624291
RGD:1600115
G Drd1 dopamine receptor D1 JBrowse link 17 11,099,736 11,104,352 RGD:1600981
G Drd2 dopamine receptor D2 JBrowse link 8 53,678,777 53,743,643 RGD:1624291
RGD:1600115
G Drd5 dopamine receptor D5 JBrowse link 14 77,220,579 77,222,006 RGD:1600981
G Egr1 early growth response 1 JBrowse link 18 27,657,903 27,660,101 RGD:1626499
G Fcgr2b Fc fragment of IgG receptor IIb JBrowse link 13 89,329,298 89,343,916 RGD:1624291
G Grik2 glutamate ionotropic receptor kainate type subunit 2 JBrowse link 20 53,791,428 54,517,691 RGD:1624291
RGD:1600115
G Grin1 glutamate ionotropic receptor NMDA type subunit 1 JBrowse link 3 2,507,745 2,534,664 RGD:1600115
RGD:1624291
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A JBrowse link 10 5,707,806 6,123,568 RGD:1642204
RGD:1642207
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B JBrowse link 4 169,541,620 170,000,216 RGD:1642204
RGD:1642207
G Grm5 glutamate metabotropic receptor 5 JBrowse link 1 151,207,846 151,785,038 RGD:1624291
RGD:1600115
G Hras HRas proto-oncogene, GTPase JBrowse link 1 214,178,404 214,181,841 RGD:1624291
RGD:1600115
G Kcnj10 potassium inwardly-rectifying channel, subfamily J, member 10 JBrowse link 13 90,722,945 90,753,338 RGD:1624291
RGD:1600115
G Kras KRAS proto-oncogene, GTPase JBrowse link 4 179,482,562 179,515,483 RGD:1624291
RGD:1600115
G Lnpep leucyl and cystinyl aminopeptidase JBrowse link 1 59,289,392 59,384,540 RGD:1582105
G Neto1 neuropilin and tolloid like 1 JBrowse link 18 83,471,342 83,585,043 RGD:1624291
RGD:1600115
G Nf1 neurofibromin 1 JBrowse link 10 66,732,460 66,928,706 RGD:1624291
RGD:1600115
G Plk3 polo-like kinase 3 JBrowse link 5 135,997,725 136,002,900 RGD:61555
G Rab11a RAB11a, member RAS oncogene family JBrowse link 8 70,192,975 70,215,719 RGD:2306457
G Rab5a RAB5A, member RAS oncogene family JBrowse link 9 5,910 6,065 RGD:2306450
RGD:13792537
G Rab5al1 Rab5a, member RAS oncogene family-like 1 JBrowse link 14 72,889,022 72,891,156 RGD:13792537
G Rab8a RAB8A, member RAS oncogene family JBrowse link 16 19,355,047 19,376,776 RGD:2306456
RGD:2306457
G Rims1 regulating synaptic membrane exocytosis 1 JBrowse link 9 28,440,408 28,973,246 RGD:1624291
G Snca synuclein alpha JBrowse link 4 90,782,412 90,883,236 RGD:1624291
RGD:1600115
G Syngap1 synaptic Ras GTPase activating protein 1 JBrowse link 20 5,535,434 5,564,657 RGD:1600115
RGD:1624291
G Syngr1 synaptogyrin 1 JBrowse link 7 121,311,008 121,334,437 RGD:1624291
RGD:1600115
G Synpo synaptopodin JBrowse link 18 55,863,081 55,921,412 RGD:1624291
G Syp synaptophysin JBrowse link X 15,694,699 15,709,244 RGD:1600115
RGD:1624291
regulation of short-term neuronal synaptic plasticity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bdnf brain-derived neurotrophic factor JBrowse link 3 100,768,637 100,819,216 RGD:724690
G Grik1 glutamate ionotropic receptor kainate type subunit 1 JBrowse link 11 27,811,954 28,213,940 RGD:1642466
G Grik2 glutamate ionotropic receptor kainate type subunit 2 JBrowse link 20 53,791,428 54,517,691 RGD:1624291
RGD:1600115
G Kmt2a lysine methyltransferase 2A JBrowse link 8 49,110,407 49,185,872 RGD:1624291
RGD:1600115
G Ppfia3 PTPRF interacting protein alpha 3 JBrowse link 1 101,328,547 101,357,391 RGD:633666
G Rab3a RAB3A, member RAS oncogene family JBrowse link 16 20,435,098 20,439,206 RGD:1624291
RGD:1600115
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 JBrowse link 13 44,578,208 44,649,876 RGD:1624291
RGD:1600115
G Shisa6 shisa family member 6 JBrowse link 10 52,744,069 53,037,853 RGD:13792537
G Shisa7 shisa family member 7 JBrowse link 1 72,545,413 72,564,513 RGD:13792537
G Shisa8 shisa family member 8 JBrowse link 7 123,440,163 123,445,613 RGD:13792537
G Shisa9 shisa family member 9 JBrowse link 10 2,777,675 3,072,842 RGD:1624291
G Slc4a10 solute carrier family 4 member 10 JBrowse link 3 47,995,812 48,287,897 RGD:1600115
RGD:1624291
G Slc8a2 solute carrier family 8 member A2 JBrowse link 1 78,029,555 78,054,042 RGD:1600115
RGD:1624291
G Syngr1 synaptogyrin 1 JBrowse link 7 121,311,008 121,334,437 RGD:1624291
RGD:1600115
G Syp synaptophysin JBrowse link X 15,694,699 15,709,244 RGD:1600115
RGD:1624291
G Unc13a unc-13 homolog A JBrowse link 16 20,056,398 20,103,951 RGD:1624291
RGD:1600115
G Unc13b unc-13 homolog B JBrowse link 5 58,505,449 58,714,396 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18166
    biological regulation 12793
      regulation of biological quality 4168
        regulation of synaptic plasticity 333
          regulation of neuronal synaptic plasticity 79
            regulation of long-term neuronal synaptic plasticity + 39
            regulation of neuronal synaptic plasticity in response to neurotrophin 0
            regulation of short-term neuronal synaptic plasticity + 18
Path 2
Term Annotations click to browse term
  biological_process 18166
    cellular process 16266
      cell communication 7200
        cell-cell signaling 1630
          synaptic signaling 888
            trans-synaptic signaling 864
              anterograde trans-synaptic signaling 855
                chemical synaptic transmission 855
                  modulation of chemical synaptic transmission 649
                    regulation of synaptic plasticity 333
                      regulation of neuronal synaptic plasticity 79
                        regulation of long-term neuronal synaptic plasticity + 39
                        regulation of neuronal synaptic plasticity in response to neurotrophin 0
                        regulation of short-term neuronal synaptic plasticity + 18
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.