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ONTOLOGY REPORT - ANNOTATIONS


Term:COPII vesicle coating
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Accession:GO:0048208 term browser browse the term
Definition:The addition of COPII proteins and adaptor proteins to ER membranes during the formation of transport vesicles, forming a vesicle coat.
Synonyms:exact_synonym: COPII coating of ER-derived vesicle;   COPII vesicle coat assembly;   COPII vesicle coat formation


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COPII vesicle coating term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKRD28 ankyrin repeat domain 28 TAS Reactome Reactome:R-HSA-204005 NCBI chr 3:15,667,236...15,859,814
Ensembl chr 3:15,667,236...15,859,771
JBrowse link
G AREG amphiregulin TAS Reactome Reactome:R-HSA-204005 NCBI chr 4:74,445,136...74,455,005
Ensembl chr 4:74,445,136...74,455,005
JBrowse link
G BET1 Bet1 golgi vesicular membrane trafficking protein TAS Reactome Reactome:R-HSA-204005 NCBI chr 7:93,962,762...94,004,355
Ensembl chr 7:93,962,762...94,004,382
JBrowse link
G CD59 CD59 molecule (CD59 blood group) TAS Reactome Reactome:R-HSA-204005 NCBI chr11:33,703,010...33,736,479
Ensembl chr11:33,703,010...33,736,491
Ensembl chr11:33,703,010...33,736,491
JBrowse link
G CNIH1 cornichon family AMPA receptor auxiliary protein 1 TAS Reactome Reactome:R-HSA-204005 NCBI chr14:54,423,561...54,441,374
Ensembl chr14:54,423,561...54,441,391
JBrowse link
G CNIH2 cornichon family AMPA receptor auxiliary protein 2 TAS Reactome Reactome:R-HSA-204005 NCBI chr11:66,278,175...66,284,206
Ensembl chr11:66,278,175...66,285,301
JBrowse link
G CNIH3 cornichon family AMPA receptor auxiliary protein 3 TAS Reactome Reactome:R-HSA-204005 NCBI chr 1:224,434,640...224,740,554
Ensembl chr 1:224,434,660...224,740,554
JBrowse link
G COL7A1 collagen type VII alpha 1 chain TAS Reactome Reactome:R-HSA-204005 NCBI chr 3:48,564,073...48,595,329
Ensembl chr 3:48,564,073...48,595,267
JBrowse link
G CRYZL2P-SEC16B CRYZL2P-SEC16B readthrough TAS
IBA
(PMID:21873635) Reactome
GO_Central
PMID:21873635 Reactome:R-HSA-204005 NCBI chr 1:177,928,788...178,037,976
Ensembl chr 1:177,928,788...178,038,007
JBrowse link
G CSNK1D casein kinase 1 delta TAS Reactome Reactome:R-HSA-204005 NCBI chr17:82,239,019...82,273,750
Ensembl chr17:82,239,023...82,273,731
JBrowse link
G CTSC cathepsin C TAS Reactome Reactome:R-HSA-204005 NCBI chr11:88,293,592...88,337,736
Ensembl chr11:88,293,592...88,337,761
JBrowse link
G CTSZ cathepsin Z TAS Reactome Reactome:R-HSA-204005 NCBI chr20:58,995,185...59,007,254
Ensembl chr20:58,995,185...59,007,254
JBrowse link
G CUL3 cullin 3 IMP (PMID:22358839) UniProtKB PMID:22358839 NCBI chr 2:224,470,150...224,585,363
Ensembl chr 2:224,470,150...224,585,397
JBrowse link
G F5 coagulation factor V TAS Reactome Reactome:R-HSA-204005 NCBI chr 1:169,511,951...169,586,630
Ensembl chr 1:169,511,951...169,586,588
Ensembl chr 1:169,511,951...169,586,588
JBrowse link
G F8 coagulation factor VIII TAS Reactome Reactome:R-HSA-204005 NCBI chr  X:154,835,792...155,022,723
Ensembl chr  X:154,835,788...155,026,940
JBrowse link
G FOLR1 folate receptor alpha TAS Reactome Reactome:R-HSA-204005 NCBI chr11:72,189,709...72,196,323
Ensembl chr11:72,189,558...72,196,323
JBrowse link
G GOLGA2 golgin A2 TAS Reactome Reactome:R-HSA-204005 NCBI chr 9:128,255,829...128,276,000
Ensembl chr 9:128,255,829...128,275,995
JBrowse link
G GORASP1 golgi reassembly stacking protein 1 TAS Reactome Reactome:R-HSA-204005 NCBI chr 3:39,096,599...39,107,843
Ensembl chr 3:39,096,659...39,108,363
JBrowse link
G GOSR2 golgi SNAP receptor complex member 2 TAS Reactome Reactome:R-HSA-204005 NCBI chr17:46,923,108...46,975,519
Ensembl chr17:46,923,075...46,975,524
JBrowse link
G GRIA1 glutamate ionotropic receptor AMPA type subunit 1 TAS Reactome Reactome:R-HSA-204005 NCBI chr 5:153,490,670...153,813,873
Ensembl chr 5:153,489,615...153,813,869
JBrowse link
G KLHL12 kelch like family member 12 IMP
IBA
(PMID:22358839), (PMID:27716508)
(PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:22358839, PMID:27716508 NCBI chr 1:202,891,116...202,928,628
Ensembl chr 1:202,891,116...202,928,636
JBrowse link
G LMAN1 lectin, mannose binding 1 TAS Reactome Reactome:R-HSA-204005 NCBI chr18:59,327,823...59,359,265
Ensembl chr18:59,327,823...59,359,265
JBrowse link
G MCFD2 multiple coagulation factor deficiency 2, ER cargo receptor complex subunit TAS Reactome Reactome:R-HSA-204005 NCBI chr 2:46,901,870...46,941,855
Ensembl chr 2:46,901,870...46,941,855
JBrowse link
G NAPA NSF attachment protein alpha TAS Reactome Reactome:R-HSA-204005 NCBI chr19:47,487,637...47,515,091
Ensembl chr19:47,487,637...47,515,091
JBrowse link
G NSF N-ethylmaleimide sensitive factor, vesicle fusing ATPase TAS Reactome Reactome:R-HSA-204005 NCBI chr17:46,590,669...46,757,464
Ensembl chr17:46,590,669...46,757,464
JBrowse link
G PDCD6 programmed cell death 6 IMP (PMID:27716508) UniProtKB PMID:27716508 NCBI chr 5:271,646...314,974
Ensembl chr 5:271,621...314,974
JBrowse link
G PEF1 penta-EF-hand domain containing 1 IMP
IBA
(PMID:27716508)
(PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:27716508 NCBI chr 1:31,629,866...31,644,876
Ensembl chr 1:31,629,866...31,644,896
JBrowse link
G PPP6C protein phosphatase 6 catalytic subunit TAS Reactome Reactome:R-HSA-204005 NCBI chr 9:125,146,573...125,189,803
Ensembl chr 9:125,146,573...125,189,939
JBrowse link
G PPP6R1 protein phosphatase 6 regulatory subunit 1 TAS Reactome Reactome:R-HSA-204005 NCBI chr19:55,229,779...55,259,017
Ensembl chr19:55,229,779...55,259,017
JBrowse link
G PPP6R3 protein phosphatase 6 regulatory subunit 3 TAS Reactome Reactome:R-HSA-204005 NCBI chr11:68,460,724...68,615,334
Ensembl chr11:68,460,731...68,615,334
JBrowse link
G PREB prolactin regulatory element binding TAS
ISS
Reactome
UniProtKB
GO_REF:0000024, Reactome:R-HSA-204005 NCBI chr 2:27,130,756...27,134,642
Ensembl chr 2:27,130,756...27,134,666
JBrowse link
G RAB1A RAB1A, member RAS oncogene family TAS Reactome Reactome:R-HSA-204005 NCBI chr 2:65,086,854...65,130,132
Ensembl chr 2:65,070,696...65,130,331
JBrowse link
G RAB1B RAB1B, member RAS oncogene family TAS Reactome Reactome:R-HSA-204005 NCBI chr11:66,268,526...66,277,492
Ensembl chr11:66,268,590...66,277,492
JBrowse link
G SAR1B secretion associated Ras related GTPase 1B TAS Reactome Reactome:R-HSA-204005 NCBI chr 5:134,601,149...134,632,828
Ensembl chr 5:134,601,149...134,649,271
JBrowse link
G SCFD1 sec1 family domain containing 1 TAS Reactome Reactome:R-HSA-204005 NCBI chr14:30,622,254...30,735,850
Ensembl chr14:30,622,311...30,735,850
JBrowse link
G SEC13 SEC13 homolog, nuclear pore and COPII coat complex component TAS Reactome Reactome:R-HSA-204005 NCBI chr 3:10,300,931...10,321,112
Ensembl chr 3:10,293,131...10,321,112
JBrowse link
G SEC16A SEC16 homolog A, endoplasmic reticulum export factor IEA
IBA
TAS
(PMID:21873635) InterPro
GO_Central
Reactome
PMID:21873635 GO_REF:0000002, Reactome:R-HSA-204005 NCBI chr 9:136,440,096...136,484,552
Ensembl chr 9:136,440,096...136,483,759
JBrowse link
G SEC16B SEC16 homolog B, endoplasmic reticulum export factor IEA
IBA
TAS
(PMID:21873635) InterPro
GO_Central
Reactome
PMID:21873635 GO_REF:0000002, Reactome:R-HSA-204005 NCBI chr 1:177,928,788...177,984,284
Ensembl chr 1:177,923,956...177,984,303
JBrowse link
G SEC22B SEC22 homolog B, vesicle trafficking protein TAS Reactome Reactome:R-HSA-204005 NCBI chr 1:120,150,898...120,176,520
Ensembl chr 1:120,150,898...120,176,520
JBrowse link
G SEC23A Sec23 homolog A, COPII coat complex component TAS Reactome Reactome:R-HSA-204005 NCBI chr14:39,031,919...39,103,235
Ensembl chr14:39,031,919...39,109,646
JBrowse link
G SEC23IP SEC23 interacting protein TAS Reactome Reactome:R-HSA-204005 NCBI chr10:119,892,696...119,944,657
Ensembl chr10:119,892,730...119,944,657
JBrowse link
G SEC24A SEC24 homolog A, COPII coat complex component TAS Reactome Reactome:R-HSA-204005 NCBI chr 5:134,647,757...134,727,909
Ensembl chr 5:134,648,785...134,727,909
JBrowse link
G SEC24B SEC24 homolog B, COPII coat complex component TAS Reactome Reactome:R-HSA-204005 NCBI chr 4:109,433,815...109,540,896
Ensembl chr 4:109,433,772...109,540,896
JBrowse link
G SEC24C SEC24 homolog C, COPII coat complex component TAS Reactome Reactome:R-HSA-204005 NCBI chr10:73,744,164...73,772,167
Ensembl chr10:73,744,372...73,772,161
JBrowse link
G SEC24D SEC24 homolog D, COPII coat complex component TAS Reactome Reactome:R-HSA-204005 NCBI chr 4:118,722,823...118,838,683
Ensembl chr 4:118,722,823...118,838,683
JBrowse link
G SEC31A SEC31 homolog A, COPII coat complex component TAS Reactome Reactome:R-HSA-204005 NCBI chr 4:82,818,509...82,900,569
Ensembl chr 4:82,818,509...82,901,166
JBrowse link
G SERPINA1 serpin family A member 1 TAS Reactome Reactome:R-HSA-204005 NCBI chr14:94,376,747...94,390,654
Ensembl chr14:94,376,747...94,390,693
JBrowse link
G STX5 syntaxin 5 TAS Reactome Reactome:R-HSA-204005 NCBI chr11:62,806,860...62,832,053
Ensembl chr11:62,806,860...62,832,051
JBrowse link
G TBC1D20 TBC1 domain family member 20 TAS Reactome Reactome:R-HSA-204005 NCBI chr20:435,480...462,543
Ensembl chr20:435,480...462,543
JBrowse link
G TFG trafficking from ER to golgi regulator TAS
IEA
Reactome
InterPro
GO_REF:0000002, Reactome:R-HSA-204005 NCBI chr 3:100,709,290...100,748,967
Ensembl chr 3:100,709,295...100,748,964
Ensembl chr 3:100,709,295...100,748,964
JBrowse link
G TGFA transforming growth factor alpha TAS Reactome Reactome:R-HSA-204005 NCBI chr 2:70,447,284...70,553,826
Ensembl chr 2:70,447,284...70,554,193
JBrowse link
G TMED10 transmembrane p24 trafficking protein 10 TAS (PMID:20427317) UniProtKB PMID:20427317 Reactome:R-HSA-204005 NCBI chr14:75,131,469...75,176,612
Ensembl chr14:75,131,469...75,176,612
JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 TAS (PMID:20427317) Reactome PMID:20427317 Reactome:R-HSA-204005 NCBI chr12:123,584,552...123,598,582
Ensembl chr12:123,584,533...123,598,582
JBrowse link
G TRAPPC1 trafficking protein particle complex 1 TAS Reactome Reactome:R-HSA-204005 NCBI chr17:7,930,345...7,931,999
Ensembl chr17:7,930,345...7,932,123
JBrowse link
G TRAPPC10 trafficking protein particle complex 10 TAS Reactome Reactome:R-HSA-204005 NCBI chr21:44,012,309...44,106,552
Ensembl chr21:44,012,309...44,106,552
JBrowse link
G TRAPPC2 trafficking protein particle complex 2 TAS Reactome Reactome:R-HSA-204005 NCBI chr  X:13,712,243...13,734,633
Ensembl chr  X:13,712,244...13,734,635
JBrowse link
G TRAPPC2L trafficking protein particle complex 2 like TAS Reactome Reactome:R-HSA-204005 NCBI chr16:88,856,220...88,862,678
Ensembl chr16:88,856,220...88,862,686
JBrowse link
G TRAPPC3 trafficking protein particle complex 3 TAS Reactome Reactome:R-HSA-204005 NCBI chr 1:36,136,572...36,156,053
Ensembl chr 1:36,136,570...36,156,053
JBrowse link
G TRAPPC4 trafficking protein particle complex 4 TAS Reactome Reactome:R-HSA-204005 NCBI chr11:119,018,766...119,024,134
Ensembl chr11:119,018,763...119,025,454
JBrowse link
G TRAPPC5 trafficking protein particle complex 5 TAS Reactome Reactome:R-HSA-204005 NCBI chr19:7,680,833...7,687,703
Ensembl chr19:7,680,833...7,687,703
JBrowse link
G TRAPPC6A trafficking protein particle complex 6A TAS Reactome Reactome:R-HSA-204005 NCBI chr19:45,162,933...45,179,266
Ensembl chr19:45,162,928...45,178,237
JBrowse link
G TRAPPC6B trafficking protein particle complex 6B TAS Reactome Reactome:R-HSA-204005 NCBI chr14:39,147,811...39,170,400
Ensembl chr14:39,147,811...39,170,532
JBrowse link
G TRAPPC9 trafficking protein particle complex 9 TAS Reactome Reactome:R-HSA-204005 NCBI chr 8:139,727,725...140,458,579
Ensembl chr 8:139,727,725...140,458,579
JBrowse link
G USO1 USO1 vesicle transport factor TAS Reactome Reactome:R-HSA-204005 NCBI chr 4:75,724,522...75,814,286
Ensembl chr 4:75,724,577...75,814,286
Ensembl chr 4:75,724,577...75,814,286
JBrowse link
regulation of COPII vesicle coating term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAPK15 mitogen-activated protein kinase 15 IMP (PMID:24618899) UniProtKB PMID:24618899 NCBI chr 8:143,716,305...143,722,458
Ensembl chr 8:143,716,340...143,722,458
JBrowse link
G PREB prolactin regulatory element binding IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:27,130,756...27,134,642
Ensembl chr 2:27,130,756...27,134,666
JBrowse link
G SAR1A secretion associated Ras related GTPase 1A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:70,147,289...70,170,514
Ensembl chr10:70,147,289...70,170,523
JBrowse link
G SAR1B secretion associated Ras related GTPase 1B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:134,601,149...134,632,828
Ensembl chr 5:134,601,149...134,649,271
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18650
    cellular process 17668
      vesicle targeting 98
        vesicle targeting, to, from or within Golgi 74
          vesicle targeting, rough ER to cis-Golgi 66
            COPII vesicle coating 66
              regulation of COPII vesicle coating 4
Path 2
Term Annotations click to browse term
  biological_process 18650
    cellular process 17668
      cellular localization 3748
        organelle localization 715
          vesicle localization 247
            establishment of vesicle localization 227
              vesicle targeting 98
                vesicle targeting, to, from or within Golgi 74
                  vesicle targeting, rough ER to cis-Golgi 66
                    COPII vesicle coating 66
                      regulation of COPII vesicle coating 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.