ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle docking
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Accession:GO:0048278 term browser browse the term
Definition:The initial attachment of a transport vesicle membrane to the target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane. Docking requires only that the two membranes come close enough for these proteins to interact and adhere.
Synonyms:exact_synonym: vesicle to membrane docking


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vesicle docking term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bves blood vessel epicardial substance JBrowse link 20 50,439,885 50,474,678 RGD:1624291
G Cav2 caveolin 2 JBrowse link 4 44,573,264 44,580,640 RGD:1624291
RGD:8554755
RGD:1600115
G Cep83 centrosomal protein 83 JBrowse link 7 35,739,553 35,847,618 RGD:1624291
RGD:1600115
G Exoc5 exocyst complex component 5 JBrowse link 15 25,888,757 25,933,302 RGD:1600115
G LOC100910446 syntaxin-7-like JBrowse link 1 23,542,376 23,560,911 RGD:13792537
G LOC103690878 syntaxin-3-like JBrowse link X 79,742,224 79,743,117 RGD:13792537
G Ndrg4 NDRG family member 4 JBrowse link 19 9,766,439 9,802,396 RGD:1624291
RGD:1600115
G Stx11 syntaxin 11 JBrowse link 1 7,039,160 7,064,870 RGD:13792537
G Stx12 syntaxin 12 JBrowse link 5 151,044,050 151,072,893 RGD:13792537
G Stx16 syntaxin 16 JBrowse link 3 172,154,739 172,183,699 RGD:13792537
G Stx17 syntaxin 17 JBrowse link 5 63,866,346 63,926,276 RGD:13792537
G Stx1a syntaxin 1A JBrowse link 12 24,682,050 24,710,002 RGD:13792537
G Stx1b syntaxin 1B JBrowse link 1 199,251,842 199,270,465 RGD:13792537
G Stx2 syntaxin 2 JBrowse link 12 31,324,203 31,360,249 RGD:13792537
G Stx3 syntaxin 3 JBrowse link 1 228,137,781 228,195,004 RGD:13792537
G Stx4 syntaxin 4 JBrowse link 1 199,287,384 199,295,606 RGD:13792537
G Stx5 syntaxin 5 JBrowse link 1 224,939,497 224,955,658 RGD:13792537
G Stx6 syntaxin 6 JBrowse link 13 72,804,218 72,850,757 RGD:13792537
G Stx7 syntaxin 7 JBrowse link 1 22,241,655 22,281,850 RGD:13792537
G Stx8 syntaxin 8 JBrowse link 10 54,512,922 54,753,302 RGD:13792537
G Syt1 synaptotagmin 1 JBrowse link 7 50,084,063 50,638,996 RGD:7205654
dense core granule docking term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Unc13a unc-13 homolog A JBrowse link 16 20,056,398 20,103,951 RGD:1624291
G Unc13b unc-13 homolog B JBrowse link 5 58,505,449 58,714,396 RGD:1624291
exocyst assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exoc8 exocyst complex component 8 JBrowse link 19 57,647,305 57,649,794 RGD:13792537
Golgi vesicle docking term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nsf N-ethylmaleimide sensitive factor, vesicle fusing ATPase JBrowse link 10 91,879,608 91,986,242 RGD:13792537
G Uso1 USO1 vesicle transport factor JBrowse link 14 17,371,451 17,436,948 RGD:13792537
positive regulation of vesicle docking term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Stxbp1 syntaxin binding protein 1 JBrowse link 3 11,823,779 11,885,479 RGD:12903989
regulation of exocyst assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ncam1 neural cell adhesion molecule 1 JBrowse link 8 53,836,797 54,134,881 RGD:1624291
G Ralb RAS like proto-oncogene B JBrowse link 13 35,494,716 35,531,503 RGD:8554641
regulation of synaptic vesicle docking term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Camk2a calcium/calmodulin-dependent protein kinase II alpha JBrowse link 18 56,193,978 56,295,869 RGD:1600115
RGD:1624291
G Sept5 septin 5 JBrowse link 11 86,516,377 86,522,169 RGD:1624291
synaptic vesicle docking term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctbp2 C-terminal binding protein 2 JBrowse link 1 205,001,354 205,030,565 RGD:1624291
RGD:1600115
G Ppfia3 PTPRF interacting protein alpha 3 JBrowse link 1 101,328,547 101,357,391 RGD:1600115
RGD:1624291
G Rims1 regulating synaptic membrane exocytosis 1 JBrowse link 9 28,440,408 28,973,246 RGD:1624291
G Rims2 regulating synaptic membrane exocytosis 2 JBrowse link 7 78,091,998 78,594,164 RGD:1624291
G Sptbn2 spectrin, beta, non-erythrocytic 2 JBrowse link 1 219,964,429 220,006,811 RGD:70020
G Stx1a syntaxin 1A JBrowse link 12 24,682,050 24,710,002 RGD:8553325
G Stx1b syntaxin 1B JBrowse link 1 199,251,842 199,270,465 RGD:1600115
RGD:1624291
G Stx3 syntaxin 3 JBrowse link 1 228,137,781 228,195,004 RGD:68313
G Stx4 syntaxin 4 JBrowse link 1 199,287,384 199,295,606 RGD:68313
G Syde1 synapse defective Rho GTPase homolog 1 JBrowse link 7 14,037,646 14,043,632 RGD:1624291
G Unc13a unc-13 homolog A JBrowse link 16 20,056,398 20,103,951 RGD:1624291
RGD:13792537
RGD:1600115
G Unc13b unc-13 homolog B JBrowse link 5 58,505,449 58,714,396 RGD:1624291
RGD:13792537
G Unc13c unc-13 homolog C JBrowse link 8 80,202,736 80,656,363 RGD:13792537
G Vamp2 vesicle-associated membrane protein 2 JBrowse link 10 55,675,171 55,679,405 RGD:1600115
RGD:1624291
vesicle docking involved in exocytosis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cftr cystic fibrosis transmembrane conductance regulator JBrowse link 4 42,693,263 42,860,679 RGD:1600115
RGD:1624291
G Cplx2 complexin 2 JBrowse link 17 10,756,871 10,828,811 RGD:70701
G Exoc4 exocyst complex component 4 JBrowse link 4 60,549,128 61,358,305 RGD:1600115
G Exoc6 exocyst complex component 6 JBrowse link 1 256,211,879 256,369,318 RGD:1600115
G Exoc6b exocyst complex component 6B JBrowse link 4 116,314,695 116,786,466 RGD:1600115
G Kcnb1 potassium voltage-gated channel subfamily B member 1 JBrowse link 3 163,850,785 163,935,610 RGD:10047179
G Nrxn1 neurexin 1 JBrowse link 6 13,886,757 15,191,660 RGD:8553305
G Plek pleckstrin JBrowse link 14 100,151,518 100,184,192 RGD:1624291
RGD:1600115
G Rab10 RAB10, member RAS oncogene family JBrowse link 6 27,668,387 27,721,120 RGD:13792537
G Rab15 RAB15, member RAS oncogene family JBrowse link 6 99,845,952 99,870,320 RGD:13792537
G Rab3a RAB3A, member RAS oncogene family JBrowse link 16 20,435,098 20,439,206 RGD:13792537
G Rab3b RAB3B, member RAS oncogene family JBrowse link 5 128,501,789 128,568,170 RGD:13792537
G Rab3c RAB3C, member RAS oncogene family JBrowse link 2 41,570,955 41,786,681 RGD:13792537
G Rab3d RAB3D, member RAS oncogene family JBrowse link 8 22,920,238 22,929,368 RGD:13792537
G Rab8a RAB8A, member RAS oncogene family JBrowse link 16 19,355,047 19,376,776 RGD:1624291
RGD:13792537
G Rab8b RAB8B, member RAS oncogene family JBrowse link 8 72,641,680 72,714,646 RGD:13792537
G Scfd1 sec1 family domain containing 1 JBrowse link 6 72,124,408 72,202,703 RGD:1600115
G Scfd2 sec1 family domain containing 2 JBrowse link 14 36,216,002 36,543,661 RGD:1600115
G Stx1b syntaxin 1B JBrowse link 1 199,251,842 199,270,465 RGD:1624291
RGD:1600115
G Stxbp1 syntaxin binding protein 1 JBrowse link 3 11,823,779 11,885,479 RGD:1600115
RGD:1624291
G Stxbp2 syntaxin binding protein 2 JBrowse link 12 2,180,101 2,191,863 RGD:1600115
G Stxbp3 syntaxin binding protein 3 JBrowse link 2 211,595,763 211,638,756 RGD:1302922
G Sytl2 synaptotagmin-like 2 JBrowse link 1
1
154,536,592
156,334,298
154,599,515
156,440,327
RGD:1624291
G Vps11 VPS11 core subunit of CORVET and HOPS complexes JBrowse link 8 48,677,492 48,692,295 RGD:13792537
G Vps18 VPS18 core subunit of CORVET and HOPS complexes JBrowse link 3 111,097,352 111,108,206 RGD:13792537
G Vps33a VPS33A core subunit of CORVET and HOPS complexes JBrowse link 12 38,459,816 38,482,903 RGD:1600115
G Vps33b VPS33B, late endosome and lysosome associated JBrowse link 1 142,060,955 142,083,955 RGD:1600115
G Vps45 vacuolar protein sorting 45 homolog JBrowse link 2 198,123,747 198,184,739 RGD:1600115
G Ykt6 YKT6 v-SNARE homolog JBrowse link 14 86,196,018 86,207,057 RGD:1624291
RGD:8553660

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17895
    cellular process 16036
      membrane docking 85
        organelle localization by membrane tethering 75
          vesicle docking 66
            Golgi vesicle docking 2
            negative regulation of vesicle docking + 0
            phagosome-lysosome docking + 0
            positive regulation of vesicle docking + 1
            regulation of vesicle docking + 5
            vesicle docking involved in exocytosis + 47
Path 2
Term Annotations click to browse term
  biological_process 17895
    localization 5951
      establishment of localization 4561
        transport 4425
          vesicle-mediated transport 1417
            vesicle docking 66
              Golgi vesicle docking 2
              negative regulation of vesicle docking + 0
              phagosome-lysosome docking + 0
              positive regulation of vesicle docking + 1
              regulation of vesicle docking + 5
              vesicle docking involved in exocytosis + 47
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.