ONTOLOGY REPORT - ANNOTATIONS


Term:oogenesis
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Accession:GO:0048477 term browser browse the term
Definition:The complete process of formation and maturation of an ovum or female gamete from a primordial female germ cell. Examples of this process are found in Mus musculus and Drosophila melanogaster.
Synonyms:exact_synonym: ovum development
 alt_id: GO:0009993;   GO:0048157
 xref: Wikipedia:Oogenesis
 only_in_taxon: NCBITaxon:33208 ! Metazoa


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oogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ASPM abnormal spindle microtubule assembly JBrowse link 7 5,591,530 5,663,673 RGD:13508589
RGD:9068941
G C8H14orf39 chromosome 8 C14orf39 homolog JBrowse link 8 35,486,476 35,542,214 RGD:9068941
RGD:13508589
G CCDC155 coiled-coil domain containing 155 JBrowse link 1 107,074,010 107,114,460 RGD:13508589
RGD:9068941
G CCDC36 coiled-coil domain containing 36 JBrowse link 20 39,964,629 40,006,726 RGD:13508589
RGD:9068941
G DDX20 DEAD-box helicase 20 JBrowse link 17 63,676,146 63,687,503 RGD:9068941
G DIAPH2 diaphanous related formin 2 JBrowse link X 69,994,674 71,044,178 RGD:9068941
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit JBrowse link 1 110,130,353 110,146,660 RGD:9068941
G FMN2 formin 2 JBrowse link 7 31,657,371 32,024,777 RGD:9068941
G HEXB hexosaminidase subunit beta JBrowse link 2 57,221,809 57,248,432 RGD:9068941
G HORMAD1 HORMA domain containing 1 JBrowse link 17 59,860,527 59,883,031 RGD:13508589
RGD:9068941
G KMT2D lysine methyltransferase 2D JBrowse link 27 5,516,866 5,556,303 RGD:9068941
G LOC475916 histone H3.3 JBrowse link 9 4,805,655 4,808,076 RGD:13508589
RGD:9068941
G LOC480110 histone H3.3 JBrowse link 7 38,797,168 38,805,417 RGD:13508589
RGD:9068941
G MARF1 meiosis regulator and mRNA stability factor 1 JBrowse link 6 28,194,771 28,231,908 RGD:13508589
RGD:9068941
G MCMDC2 minichromosome maintenance domain containing 2 JBrowse link 29 16,424,088 16,462,094 RGD:9068941
G MDK midkine JBrowse link 18 43,085,095 43,086,455 RGD:9068941
G MEI4 meiotic double-stranded break formation protein 4 JBrowse link 12 38,818,983 39,024,784 RGD:9068941
RGD:13508589
G MLH1 mutL homolog 1 JBrowse link 23 6,889,108 6,938,117 RGD:13508589
RGD:9068941
G NOBOX NOBOX oogenesis homeobox JBrowse link 16 5,625,279 5,638,052 RGD:9068941
G PAQR5 progestin and adipoQ receptor family member 5 JBrowse link 30 33,236,655 33,305,668 RGD:9068941
G PAQR7 progestin and adipoQ receptor family member 7 JBrowse link 2 74,084,915 74,095,633 RGD:9068941
G PAQR8 progestin and adipoQ receptor family member 8 JBrowse link 12 19,968,950 20,059,344 RGD:9068941
G PIWIL2 piwi like RNA-mediated gene silencing 2 JBrowse link 25 34,911,120 34,987,287 RGD:13508589
RGD:9068941
G PTN pleiotrophin JBrowse link 16 11,283,078 11,382,820 RGD:9068941
G SEBOX SEBOX homeobox JBrowse link 9 42,614,770 42,616,412 RGD:9068941
G SPO11 SPO11 initiator of meiotic double stranded breaks JBrowse link 24 42,345,595 42,360,851 RGD:13508589
RGD:9068941
G SRC SRC proto-oncogene, non-receptor tyrosine kinase JBrowse link 24 25,982,499 26,019,748 RGD:9068941
G STRA8 stimulated by retinoic acid 8 JBrowse link 16 12,929,110 12,952,468 RGD:9068941
G TAF4B TATA-box binding protein associated factor 4b JBrowse link 7 62,276,885 62,402,838 RGD:9068941
G TRIP13 thyroid hormone receptor interactor 13 JBrowse link 34 11,522,940 11,539,885 RGD:13508589
RGD:9068941
egg coat formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ZP3 zona pellucida glycoprotein 3 JBrowse link 6 7,586,212 7,594,610 RGD:13508589
RGD:9068941
mammalian oogenesis stage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RPS6 ribosomal protein S6 JBrowse link 11 39,161,422 39,165,148 RGD:13508589
RGD:9068941
negative regulation of oocyte development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IGF1 insulin like growth factor 1 JBrowse link 15 41,203,320 41,275,964 RGD:9068941
RGD:13508589
negative regulation of oocyte maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NPPC natriuretic peptide C JBrowse link 25 43,714,545 43,718,969 RGD:13508589
RGD:9068941
G NPR2 natriuretic peptide receptor 2 JBrowse link 11 52,283,680 52,339,247 RGD:9068941
G WEE2 WEE1 homolog 2 JBrowse link 16 7,466,651 7,485,150 RGD:13508589
RGD:9068941
oocyte development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATM ATM serine/threonine kinase JBrowse link 5 24,180,129 24,297,207 RGD:9068941
G AURKC aurora kinase C JBrowse link 1 100,834,016 100,837,657 RGD:9068941
G BCL2 BCL2 apoptosis regulator JBrowse link 1 13,733,849 13,900,653 RGD:9068941
G CTNNB1 catenin beta 1 JBrowse link 23 10,559,722 10,572,933 RGD:13508589
RGD:9068941
G DMRT1 doublesex and mab-3 related transcription factor 1 JBrowse link 1 89,677,554 89,790,692 RGD:9068941
RGD:13508589
G FIGLA folliculogenesis specific bHLH transcription factor JBrowse link 10 69,148,938 69,170,371 RGD:9068941
G INHBB inhibin subunit beta B JBrowse link 19 29,765,697 29,768,485 RGD:9068941
G MEIOC meiosis specific with coiled-coil domain JBrowse link 9 18,795,289 18,814,677 RGD:13508589
RGD:9068941
G WNT4 Wnt family member 4 JBrowse link 2 77,112,045 77,129,702 RGD:13508589
RGD:9068941
G YBX2 Y-box binding protein 2 JBrowse link 5 32,244,536 32,250,130 RGD:9068941
G YTHDC2 YTH domain containing 2 JBrowse link 11 3,537,571 3,613,455 RGD:9068941
G ZFX zinc finger protein X-linked JBrowse link X 19,722,172 19,793,059 RGD:13508589
G ZGLP1 zinc finger GATA like protein 1 JBrowse link 20 50,802,878 50,805,665 RGD:9068941
G ZP3 zona pellucida glycoprotein 3 JBrowse link 6 7,586,212 7,594,610 RGD:13508589
RGD:9068941
oocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KMT2B lysine methyltransferase 2B JBrowse link 1 116,894,024 116,913,464 RGD:9068941
G NPM2 nucleophosmin/nucleoplasmin 2 JBrowse link 25 35,204,905 35,226,226 RGD:9068941
G SOHLH1 spermatogenesis and oogenesis specific basic helix-loop-helix 1 JBrowse link 9 49,593,740 49,598,279 RGD:9068941
G SOHLH2 spermatogenesis and oogenesis specific basic helix-loop-helix 2 JBrowse link 25 4,345,785 4,419,352 RGD:13508589
RGD:9068941
oocyte growth term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FOXL2 forkhead box L2 JBrowse link 23 35,145,856 35,147,185 RGD:9068941
G GDF9 growth differentiation factor 9 JBrowse link 11 21,143,982 21,148,945 RGD:13508589
RGD:9068941
G KMT2D lysine methyltransferase 2D JBrowse link 27 5,516,866 5,556,303 RGD:9068941
oocyte maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BRCA2 BRCA2 DNA repair associated JBrowse link 25 7,734,450 7,797,851 RGD:9068941
G CCNB1 cyclin B1 JBrowse link 2 54,256,957 54,264,749 RGD:9068941
G CDC25B cell division cycle 25B JBrowse link 24 17,552,206 17,561,791 RGD:9068941
G DAZL deleted in azoospermia like JBrowse link 23 26,194,061 26,212,506 RGD:9068941
G DMC1 DNA meiotic recombinase 1 JBrowse link 10 26,228,662 26,265,377 RGD:13508589
RGD:9068941
G EREG epiregulin JBrowse link 13 62,857,325 62,877,831 RGD:9068941
G FBXO5 F-box protein 5 JBrowse link 1 43,138,338 43,149,546 RGD:13508589
RGD:9068941
G FOXO3 forkhead box O3 JBrowse link 12 65,552,455 65,673,467 RGD:13508589
RGD:9068941
G PABPC1L poly(A) binding protein cytoplasmic 1 like JBrowse link 24 32,327,479 32,348,964 RGD:9068941
G PDE3A phosphodiesterase 3A JBrowse link 27 26,555,558 26,878,624 RGD:9068941
G PTK2B protein tyrosine kinase 2 beta JBrowse link 25 30,137,546 30,264,221 RGD:9068941
G REC8 REC8 meiotic recombination protein JBrowse link 8 4,165,637 4,171,488 RGD:9068941
G RPS6KA2 ribosomal protein S6 kinase A2 JBrowse link 1 54,413,805 54,757,067 RGD:9068941
G RXFP2 relaxin family peptide receptor 2 JBrowse link 25 8,307,850 8,368,438 RGD:9068941
G TRIP13 thyroid hormone receptor interactor 13 JBrowse link 34 11,522,940 11,539,885 RGD:13508589
RGD:9068941
G TUT4 terminal uridylyl transferase 4 JBrowse link 15 8,832,208 8,958,136 RGD:9068941
G TUT7 terminal uridylyl transferase 7 JBrowse link 1 73,400,648 73,464,935 RGD:9068941
G WASHC1 WASH complex subunit 1 JBrowse link 27 42,102,694 42,118,850 RGD:13508589
G WASHC5 WASH complex subunit 5 JBrowse link 13 23,019,422 23,078,073 RGD:13508589
RGD:9068941
G YTHDF2 YTH N6-methyladenosine RNA binding protein 2 JBrowse link 2 71,760,232 71,791,420 RGD:9068941
ovarian cumulus expansion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMPR1B bone morphogenetic protein receptor type 1B JBrowse link 32 17,761,555 17,978,056 RGD:13508589
RGD:9068941
G EREG epiregulin JBrowse link 13 62,857,325 62,877,831 RGD:9068941
G PTX3 pentraxin 3 JBrowse link 23 50,952,835 50,958,607 RGD:9068941
P granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PLD6 phospholipase D family member 6 JBrowse link 5 42,208,594 42,212,403 RGD:9068941
RGD:13508589
G TDRD5 tudor domain containing 5 JBrowse link 7 20,259,940 20,348,014 RGD:13508589
RGD:9068941
positive regulation of oocyte development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PDE3A phosphodiesterase 3A JBrowse link 27 26,555,558 26,878,624 RGD:9068941
G PDE5A phosphodiesterase 5A JBrowse link 32 38,272,573 38,407,517 RGD:13508589
RGD:9068941
positive regulation of oocyte maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AURKA aurora kinase A JBrowse link 24 41,585,483 41,604,875 RGD:9068941
G SIRT2 sirtuin 2 JBrowse link 1 114,224,922 114,235,041 RGD:9068941
preantral ovarian follicle growth term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AMH anti-Mullerian hormone JBrowse link 20 56,785,960 56,788,815 RGD:9068941
G GPR149 G protein-coupled receptor 149 JBrowse link 23 48,470,428 48,535,861 RGD:13508589
RGD:9068941
G ZNF830 zinc finger protein 830 JBrowse link 9 38,382,508 38,384,060 RGD:13508589
RGD:9068941
primary follicle stage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EREG epiregulin JBrowse link 13 62,857,325 62,877,831 RGD:9068941
regulation of meiotic cell cycle process involved in oocyte maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PPP2R1A protein phosphatase 2 scaffold subunit Aalpha JBrowse link 1 104,974,059 105,013,745 RGD:13508589
RGD:9068941
G YTHDF2 YTH N6-methyladenosine RNA binding protein 2 JBrowse link 2 71,760,232 71,791,420 RGD:9068941
vitelline membrane formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IHH Indian hedgehog signaling molecule JBrowse link 37 25,616,942 25,622,989 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15803
    cellular process 14479
      cellular process involved in reproduction in multicellular organism 335
        germ cell development 245
          oogenesis 86
            egg coat formation + 2
            eggshell formation + 0
            female germ-line cyst formation + 0
            female germ-line stem cell asymmetric division 0
            germarium-derived egg chamber formation + 0
            growth of a germarium-derived egg chamber + 0
            mammalian oogenesis stage + 7
            negative regulation of oogenesis + 4
            nurse cell apoptotic process + 0
            oocyte differentiation + 51
            oocyte karyosome formation 0
            ovarian follicle cell development + 0
            ovarian nurse cell to oocyte transport + 0
            positive regulation of oogenesis + 4
            regulation of oogenesis + 10
Path 2
Term Annotations click to browse term
  biological_process 15803
    reproduction 1377
      reproductive process 1374
        multi-organism reproductive process 948
          sexual reproduction 788
            gamete generation 633
              female gamete generation 135
                oogenesis 86
                  egg coat formation + 2
                  eggshell formation + 0
                  female germ-line cyst formation + 0
                  female germ-line stem cell asymmetric division 0
                  germarium-derived egg chamber formation + 0
                  growth of a germarium-derived egg chamber + 0
                  mammalian oogenesis stage + 7
                  negative regulation of oogenesis + 4
                  nurse cell apoptotic process + 0
                  oocyte differentiation + 51
                  oocyte karyosome formation 0
                  ovarian follicle cell development + 0
                  ovarian nurse cell to oocyte transport + 0
                  positive regulation of oogenesis + 4
                  regulation of oogenesis + 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.